Protein–RNA interactions for Protein: P12111

COL6A3, Collagen alpha-3(VI) chain, humanhuman

Predictions only

Length 3,177 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3P12111 TMCC1-203ENST00000432054 5631 ntTSL 1 (best) BASIC4.65□□□□□ -1.67
COL6A3P12111 B4GALNT2-202ENST00000393354 8657 ntAPPRIS ALT2 TSL 1 (best) BASIC4.65□□□□□ -1.67
COL6A3P12111 TTC28-208ENST00000612946 11274 ntAPPRIS ALT2 TSL 5 BASIC4.65□□□□□ -1.67
COL6A3P12111 LIMD1-201ENST00000273317 11331 ntAPPRIS P1 TSL 1 (best) BASIC4.65□□□□□ -1.67
COL6A3P12111 SPA17-201ENST00000227135 853 ntAPPRIS P1 TSL 1 (best) BASIC4.65□□□□□ -1.67
COL6A3P12111 MTCO1P45-201ENST00000431457 267 ntBASIC4.65□□□□□ -1.67
COL6A3P12111 LINC00894-203ENST00000432696 298 ntTSL 1 (best) BASIC4.65□□□□□ -1.67
COL6A3P12111 LINC02479-201ENST00000508942 630 ntTSL 3 BASIC4.65□□□□□ -1.67
COL6A3P12111 AC007991.1-201ENST00000522680 631 ntBASIC4.65□□□□□ -1.67
COL6A3P12111 AC023442.3-203ENST00000530946 533 ntTSL 4 BASIC4.65□□□□□ -1.67
COL6A3P12111 ZNF790-201ENST00000356725 3037 ntAPPRIS P1 TSL 2 BASIC4.65□□□□□ -1.67
COL6A3P12111 ZNF286A-202ENST00000395894 5443 ntTSL 1 (best) BASIC4.65□□□□□ -1.67
COL6A3P12111 KIF1B-211ENST00000620295 8624 ntTSL 1 (best) BASIC4.65□□□□□ -1.67
COL6A3P12111 FTO-204ENST00000463855 3056 ntTSL 1 (best) BASIC4.64□□□□□ -1.67
COL6A3P12111 PREPL-206ENST00000409936 5212 ntAPPRIS P1 TSL 1 (best) BASIC4.64□□□□□ -1.67
COL6A3P12111 KATNAL1-201ENST00000380615 7551 ntAPPRIS P1 TSL 1 (best) BASIC4.64□□□□□ -1.67
COL6A3P12111 AC008033.1-201ENST00000216407 1162 ntBASIC4.64□□□□□ -1.67
COL6A3P12111 ZNF107-201ENST00000344930 5174 ntTSL 1 (best) BASIC4.64□□□□□ -1.67
COL6A3P12111 DPPA3-201ENST00000345088 1079 ntAPPRIS P1 TSL 1 (best) BASIC4.64□□□□□ -1.67
COL6A3P12111 LGALS16-201ENST00000392051 624 ntAPPRIS P1 TSL 1 (best) BASIC4.64□□□□□ -1.67
COL6A3P12111 AL357500.1-201ENST00000413004 279 ntTSL 3 BASIC4.64□□□□□ -1.67
COL6A3P12111 COX6B1P7-201ENST00000430845 235 ntBASIC4.64□□□□□ -1.67
COL6A3P12111 RPL35P6-201ENST00000490024 372 ntBASIC4.64□□□□□ -1.67
COL6A3P12111 WBP1LP4-201ENST00000505043 344 ntBASIC4.64□□□□□ -1.67
COL6A3P12111 PGBD4P4-201ENST00000509673 613 ntBASIC4.64□□□□□ -1.67
COL6A3P12111 NPM1P21-201ENST00000513394 762 ntBASIC4.64□□□□□ -1.67
COL6A3P12111 HMGN1P15-201ENST00000513870 295 ntBASIC4.64□□□□□ -1.67
COL6A3P12111 MIR6839-201ENST00000620425 113 ntBASIC4.64□□□□□ -1.67
COL6A3P12111 C8orf89-203ENST00000625134 507 ntAPPRIS ALT2 TSL 1 (best) BASIC4.64□□□□□ -1.67
COL6A3P12111 LINC01013-205ENST00000458028 1345 ntTSL 1 (best) BASIC4.64□□□□□ -1.67
COL6A3P12111 SLC26A7-208ENST00000523719 2902 ntAPPRIS P1 TSL 2 BASIC4.64□□□□□ -1.67
COL6A3P12111 AC007382.1-201ENST00000624376 2618 ntBASIC4.64□□□□□ -1.67
COL6A3P12111 MAVS-202ENST00000428216 11714 ntAPPRIS P1 TSL 1 (best) BASIC4.64□□□□□ -1.67
COL6A3P12111 AC083899.2-201ENST00000423285 1376 ntBASIC4.64□□□□□ -1.67
COL6A3P12111 OPCML-203ENST00000524381 6424 ntTSL 1 (best) BASIC4.64□□□□□ -1.67
COL6A3P12111 OR4A15-201ENST00000314706 1035 ntBASIC4.64□□□□□ -1.67
COL6A3P12111 RPS17P17-201ENST00000419392 409 ntBASIC4.64□□□□□ -1.67
COL6A3P12111 AL356056.1-206ENST00000424615 407 ntTSL 5 BASIC4.64□□□□□ -1.67
COL6A3P12111 AC073052.1-201ENST00000440417 714 ntBASIC4.64□□□□□ -1.67
COL6A3P12111 AC012081.1-201ENST00000462382 477 ntTSL 3 BASIC4.64□□□□□ -1.67
COL6A3P12111 LCP2-201ENST00000046794 4678 ntAPPRIS P2 TSL 1 (best) BASIC4.64□□□□□ -1.67
COL6A3P12111 AC017015.1-201ENST00000477387 286 ntBASIC4.64□□□□□ -1.67
COL6A3P12111 GOLGA8M-203ENST00000568033 557 ntTSL 4 BASIC4.64□□□□□ -1.67
COL6A3P12111 SNORA74C-1-201ENST00000580726 201 ntBASIC4.64□□□□□ -1.67
COL6A3P12111 PACRG-211ENST00000621363 360 ntTSL 5 BASIC4.64□□□□□ -1.67
COL6A3P12111 PCBP1-AS1-348ENST00000629506 667 ntTSL 5 BASIC4.64□□□□□ -1.67
COL6A3P12111 AL391684.1-202ENST00000641293 1636 ntBASIC4.64□□□□□ -1.67
COL6A3P12111 SLF1-201ENST00000265140 5905 ntAPPRIS P1 TSL 2 BASIC4.64□□□□□ -1.67
COL6A3P12111 RTL9-203ENST00000540313 5225 ntAPPRIS P2 TSL 2 BASIC4.64□□□□□ -1.67
COL6A3P12111 AL158066.1-201ENST00000451298 3796 ntTSL 2 BASIC4.64□□□□□ -1.67
COL6A3P12111 PDE4B-201ENST00000329654 3998 ntTSL 1 (best) BASIC4.64□□□□□ -1.67
COL6A3P12111 ENKUR-205ENST00000615958 3294 ntTSL 1 (best) BASIC4.64□□□□□ -1.67
COL6A3P12111 FARP1-219ENST00000596580 13532 ntTSL 5 BASIC4.64□□□□□ -1.67
COL6A3P12111 C6-202ENST00000337836 3551 ntAPPRIS P1 TSL 1 (best) BASIC4.63□□□□□ -1.67
COL6A3P12111 LINC02432-202ENST00000509161 2839 ntTSL 2 BASIC4.63□□□□□ -1.67
COL6A3P12111 USP9YP36-201ENST00000424581 829 ntBASIC4.63□□□□□ -1.67
COL6A3P12111 AC009478.1-201ENST00000429816 562 ntTSL 3 BASIC4.63□□□□□ -1.67
COL6A3P12111 USP9YP31-201ENST00000431405 881 ntBASIC4.63□□□□□ -1.67
COL6A3P12111 LINC00534-201ENST00000517400 793 ntTSL 2 BASIC4.63□□□□□ -1.67
COL6A3P12111 KLRD1-209ENST00000543420 802 ntTSL 5 BASIC4.63□□□□□ -1.67
COL6A3P12111 MIR4672-201ENST00000583126 81 ntBASIC4.63□□□□□ -1.67
COL6A3P12111 AC069542.2-201ENST00000624816 216 ntBASIC4.63□□□□□ -1.67
COL6A3P12111 METTL2B-204ENST00000480046 5743 ntTSL 2 BASIC4.63□□□□□ -1.67
COL6A3P12111 C2orf78-201ENST00000409561 3045 ntAPPRIS P1 TSL 2 BASIC4.63□□□□□ -1.67
COL6A3P12111 CNOT1-201ENST00000317147 8471 ntAPPRIS P3 TSL 1 (best) BASIC4.63□□□□□ -1.67
COL6A3P12111 ACADSB-201ENST00000358776 5859 ntAPPRIS P1 TSL 1 (best) BASIC4.63□□□□□ -1.67
COL6A3P12111 MBTD1-203ENST00000415868 5099 ntAPPRIS P1 TSL 5 BASIC4.63□□□□□ -1.67
COL6A3P12111 SLC17A3-204ENST00000397060 2052 ntAPPRIS P1 TSL 2 BASIC4.63□□□□□ -1.67
COL6A3P12111 CDK15-204ENST00000450471 3659 ntAPPRIS ALT1 TSL 1 (best) BASIC4.63□□□□□ -1.67
COL6A3P12111 AC009229.4-201ENST00000623854 1947 ntBASIC4.63□□□□□ -1.67
COL6A3P12111 CERS3-AS1-201ENST00000560643 372 ntTSL 3 BASIC4.63□□□□□ -1.67
COL6A3P12111 CERS3-AS1-202ENST00000560718 432 ntTSL 3 BASIC4.63□□□□□ -1.67
COL6A3P12111 AC008543.4-201ENST00000585694 442 ntTSL 2 BASIC4.63□□□□□ -1.67
COL6A3P12111 CTNND1-219ENST00000528621 5907 ntTSL 1 (best) BASIC4.63□□□□□ -1.67
COL6A3P12111 ZEB2-234ENST00000636413 8984 ntTSL 5 BASIC4.63□□□□□ -1.67
COL6A3P12111 OR56A4-204ENST00000641835 3613 ntAPPRIS P1 BASIC4.63□□□□□ -1.67
COL6A3P12111 ZNF611-201ENST00000319783 3153 ntAPPRIS P1 TSL 2 BASIC4.63□□□□□ -1.67
COL6A3P12111 SPATA31D5P-202ENST00000527857 4863 ntTSL 1 (best) BASIC4.63□□□□□ -1.67
COL6A3P12111 TERB1-203ENST00000558713 2257 ntAPPRIS P1 TSL 5 BASIC4.63□□□□□ -1.67
COL6A3P12111 AC073342.2-201ENST00000595842 1800 ntBASIC4.63□□□□□ -1.67
COL6A3P12111 MAK-204ENST00000536370 3767 ntTSL 1 (best) BASIC4.63□□□□□ -1.67
COL6A3P12111 MAPK8-205ENST00000374182 5638 ntTSL 1 (best) BASIC4.63□□□□□ -1.67
COL6A3P12111 ARHGAP24-201ENST00000264343 4572 ntTSL 1 (best) BASIC4.63□□□□□ -1.67
COL6A3P12111 RFC1-202ENST00000381897 4886 ntAPPRIS ALT2 TSL 1 (best) BASIC4.63□□□□□ -1.67
COL6A3P12111 EYA1-203ENST00000388740 3788 ntTSL 5 BASIC4.63□□□□□ -1.67
COL6A3P12111 IARS-201ENST00000375627 697 ntTSL 3 BASIC4.63□□□□□ -1.67
COL6A3P12111 IL23R-203ENST00000425614 1295 ntTSL 1 (best) BASIC4.63□□□□□ -1.67
COL6A3P12111 GAPDHP36-201ENST00000480688 918 ntBASIC4.63□□□□□ -1.67
COL6A3P12111 AC079064.1-201ENST00000528365 362 ntBASIC4.63□□□□□ -1.67
COL6A3P12111 AC010998.2-201ENST00000605549 625 ntTSL 5 BASIC4.63□□□□□ -1.67
COL6A3P12111 AC004836.1-201ENST00000623032 634 ntBASIC4.63□□□□□ -1.67
COL6A3P12111 KMT5B-215ENST00000615954 4306 ntAPPRIS P1 TSL 1 (best) BASIC4.63□□□□□ -1.67
COL6A3P12111 ZNF573-201ENST00000339503 2014 ntTSL 5 BASIC4.62□□□□□ -1.67
COL6A3P12111 SEC22A-201ENST00000309934 4228 ntAPPRIS P1 TSL 1 (best) BASIC4.62□□□□□ -1.67
COL6A3P12111 ZNF555-201ENST00000334241 8557 ntAPPRIS P3 TSL 1 (best) BASIC4.62□□□□□ -1.67
COL6A3P12111 SYTL5-202ENST00000456733 4704 ntAPPRIS P1 TSL 1 (best) BASIC4.62□□□□□ -1.67
COL6A3P12111 PLEKHG1-201ENST00000358517 7138 ntAPPRIS P1 TSL 5 BASIC4.62□□□□□ -1.67
COL6A3P12111 DGKB-201ENST00000399322 6684 ntAPPRIS P2 TSL 5 BASIC4.62□□□□□ -1.67
COL6A3P12111 TBCAP1-201ENST00000436520 327 ntBASIC4.62□□□□□ -1.67
COL6A3P12111 LMOD2-201ENST00000456238 918 ntTSL 1 (best) BASIC4.62□□□□□ -1.67
Retrieved 100 of 98,524 protein–RNA pairs in 94.5 ms