Protein–RNA interactions for Protein: H3BT56

CHKB-CPT1B, CHKB-CPT1B readthrough (NMD candidate) (Fragment), humanhuman

Predictions only

Length 60 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHKB-CPT1BH3BT56 BIRC3-201ENST00000263464 5197 ntAPPRIS P1 TSL 1 (best) BASIC2.55□□□□□ -2
CHKB-CPT1BH3BT56 PRIM2-201ENST00000274891 864 ntTSL 1 (best) BASIC2.55□□□□□ -2
CHKB-CPT1BH3BT56 PATJ-202ENST00000316485 3657 ntTSL 5 BASIC2.55□□□□□ -2
CHKB-CPT1BH3BT56 OR4F21-201ENST00000320901 995 ntAPPRIS P1 BASIC2.55□□□□□ -2
CHKB-CPT1BH3BT56 TAF13-201ENST00000338366 813 ntAPPRIS P1 TSL 1 (best) BASIC2.55□□□□□ -2
CHKB-CPT1BH3BT56 RN7SKP115-201ENST00000363177 317 ntBASIC2.55□□□□□ -2
CHKB-CPT1BH3BT56 RNA5SP77-201ENST00000365394 120 ntBASIC2.55□□□□□ -2
CHKB-CPT1BH3BT56 RNU4-2-201ENST00000365668 141 ntBASIC2.55□□□□□ -2
CHKB-CPT1BH3BT56 DEFB110-201ENST00000371148 384 ntAPPRIS P3 TSL 1 (best) BASIC2.55□□□□□ -2
CHKB-CPT1BH3BT56 AMELX-203ENST00000380714 793 ntAPPRIS P1 TSL 1 (best) BASIC2.55□□□□□ -2
CHKB-CPT1BH3BT56 MIR921-201ENST00000401133 56 ntBASIC2.55□□□□□ -2
CHKB-CPT1BH3BT56 FAM26D-203ENST00000405399 1165 ntTSL 1 (best) BASIC2.55□□□□□ -2
CHKB-CPT1BH3BT56 U3.35-201ENST00000408405 208 ntBASIC2.55□□□□□ -2
CHKB-CPT1BH3BT56 DPP10-204ENST00000409163 3883 ntAPPRIS ALT2 TSL 2 BASIC2.55□□□□□ -2
CHKB-CPT1BH3BT56 MGAT4A-203ENST00000409391 2018 ntAPPRIS P1 TSL 5 BASIC2.55□□□□□ -2
CHKB-CPT1BH3BT56 FCHSD2-205ENST00000409853 1867 ntTSL 1 (best) BASIC2.55□□□□□ -2
CHKB-CPT1BH3BT56 RNA5SP306-201ENST00000411087 107 ntBASIC2.55□□□□□ -2
CHKB-CPT1BH3BT56 RPL6P29-201ENST00000414863 865 ntBASIC2.55□□□□□ -2
CHKB-CPT1BH3BT56 AC087380.1-202ENST00000415970 1163 ntTSL 2 BASIC2.55□□□□□ -2
CHKB-CPT1BH3BT56 FO393401.1-203ENST00000416260 486 ntTSL 5 BASIC2.55□□□□□ -2
CHKB-CPT1BH3BT56 LINC00626-201ENST00000420691 955 ntTSL 1 (best) BASIC2.55□□□□□ -2
CHKB-CPT1BH3BT56 AL139811.1-201ENST00000424779 2299 ntBASIC2.55□□□□□ -2
CHKB-CPT1BH3BT56 AL031428.1-201ENST00000427154 666 ntTSL 2 BASIC2.55□□□□□ -2
CHKB-CPT1BH3BT56 MTCO1P54-201ENST00000430139 712 ntBASIC2.55□□□□□ -2
CHKB-CPT1BH3BT56 ARF4P2-201ENST00000430209 526 ntBASIC2.55□□□□□ -2
CHKB-CPT1BH3BT56 MTRF1-204ENST00000430347 557 ntTSL 5 BASIC2.55□□□□□ -2
CHKB-CPT1BH3BT56 RPS26P40-201ENST00000435209 294 ntBASIC2.55□□□□□ -2
CHKB-CPT1BH3BT56 C6orf10-204ENST00000447241 2148 ntAPPRIS P3 TSL 5 BASIC2.55□□□□□ -2
CHKB-CPT1BH3BT56 AL139275.1-201ENST00000447315 824 ntTSL 1 (best) BASIC2.55□□□□□ -2
CHKB-CPT1BH3BT56 DTHD1-202ENST00000456874 3365 ntAPPRIS P1 TSL 1 (best) BASIC2.55□□□□□ -2
CHKB-CPT1BH3BT56 RPL9P32-201ENST00000464118 620 ntBASIC2.55□□□□□ -2
CHKB-CPT1BH3BT56 RN7SL798P-201ENST00000468562 301 ntBASIC2.55□□□□□ -2
CHKB-CPT1BH3BT56 ST20-201ENST00000478497 1004 ntAPPRIS P1 TSL 1 (best) BASIC2.55□□□□□ -2
CHKB-CPT1BH3BT56 STRADBP1-201ENST00000478954 1281 ntBASIC2.55□□□□□ -2
CHKB-CPT1BH3BT56 LSAMP-AS1-201ENST00000490351 553 ntTSL 2 BASIC2.55□□□□□ -2
CHKB-CPT1BH3BT56 LINC00971-203ENST00000491849 452 ntTSL 3 BASIC2.55□□□□□ -2
CHKB-CPT1BH3BT56 LINC01596-201ENST00000503609 592 ntTSL 2 BASIC2.55□□□□□ -2
CHKB-CPT1BH3BT56 AL033397.2-201ENST00000508884 547 ntTSL 2 BASIC2.55□□□□□ -2
CHKB-CPT1BH3BT56 LDHAP1-201ENST00000509421 992 ntBASIC2.55□□□□□ -2
CHKB-CPT1BH3BT56 LINC02117-201ENST00000513673 540 ntTSL 4 BASIC2.55□□□□□ -2
CHKB-CPT1BH3BT56 ADAM29-211ENST00000514159 3010 ntAPPRIS P1 TSL 4 BASIC2.55□□□□□ -2
CHKB-CPT1BH3BT56 AC106791.1-201ENST00000514616 827 ntTSL 5 BASIC2.55□□□□□ -2
CHKB-CPT1BH3BT56 AZIN1-AS1-203ENST00000517996 756 ntTSL 3 BASIC2.55□□□□□ -2
CHKB-CPT1BH3BT56 AC099805.1-203ENST00000518177 773 ntTSL 2 BASIC2.55□□□□□ -2
CHKB-CPT1BH3BT56 AC012400.1-201ENST00000518452 381 ntBASIC2.55□□□□□ -2
CHKB-CPT1BH3BT56 TRAPPC2-208ENST00000519885 561 ntTSL 3 BASIC2.55□□□□□ -2
CHKB-CPT1BH3BT56 AC090155.1-201ENST00000520800 407 ntTSL 3 BASIC2.55□□□□□ -2
CHKB-CPT1BH3BT56 RSF1-IT2-201ENST00000529656 566 ntTSL 5 BASIC2.55□□□□□ -2
CHKB-CPT1BH3BT56 AP004607.2-201ENST00000533949 322 ntBASIC2.55□□□□□ -2
CHKB-CPT1BH3BT56 ZNF83-204ENST00000545872 2633 ntAPPRIS P1 TSL 2 BASIC2.55□□□□□ -2
CHKB-CPT1BH3BT56 AC009387.1-201ENST00000549163 441 ntTSL 3 BASIC2.55□□□□□ -2
CHKB-CPT1BH3BT56 MGAT4C-206ENST00000552435 550 ntTSL 4 BASIC2.55□□□□□ -2
CHKB-CPT1BH3BT56 AL358292.1-201ENST00000554181 412 ntTSL 2 BASIC2.55□□□□□ -2
CHKB-CPT1BH3BT56 AC006530.1-201ENST00000555980 571 ntBASIC2.55□□□□□ -2
CHKB-CPT1BH3BT56 AC092134.1-201ENST00000563690 800 ntTSL 3 BASIC2.55□□□□□ -2
CHKB-CPT1BH3BT56 LINC02259-202ENST00000565543 438 ntTSL 2 BASIC2.55□□□□□ -2
CHKB-CPT1BH3BT56 AC131274.1-201ENST00000582507 254 ntTSL 3 BASIC2.55□□□□□ -2
CHKB-CPT1BH3BT56 AC024267.4-202ENST00000582631 436 ntTSL 2 BASIC2.55□□□□□ -2
CHKB-CPT1BH3BT56 AC090227.1-201ENST00000590532 936 ntAPPRIS P1 TSL 5 BASIC2.55□□□□□ -2
CHKB-CPT1BH3BT56 AC012370.2-201ENST00000597541 1080 ntTSL 5 BASIC2.55□□□□□ -2
CHKB-CPT1BH3BT56 BICRA-AS1-201ENST00000598376 547 ntTSL 4 BASIC2.55□□□□□ -2
CHKB-CPT1BH3BT56 AC090953.1-201ENST00000604305 1092 ntBASIC2.55□□□□□ -2
CHKB-CPT1BH3BT56 AC005377.1-201ENST00000605126 456 ntBASIC2.55□□□□□ -2
CHKB-CPT1BH3BT56 AL359091.2-201ENST00000609303 556 ntBASIC2.55□□□□□ -2
CHKB-CPT1BH3BT56 U7.8-201ENST00000619968 63 ntBASIC2.55□□□□□ -2
CHKB-CPT1BH3BT56 AC013489.3-201ENST00000623274 517 ntBASIC2.55□□□□□ -2
CHKB-CPT1BH3BT56 AC072062.1-209ENST00000627336 772 ntTSL 5 BASIC2.55□□□□□ -2
CHKB-CPT1BH3BT56 LINC00550-201ENST00000629293 3434 ntTSL 1 (best) BASIC2.55□□□□□ -2
CHKB-CPT1BH3BT56 FAAHP1-207ENST00000635606 398 ntTSL 3 BASIC2.55□□□□□ -2
CHKB-CPT1BH3BT56 STON1-GTF2A1L-202ENST00000394754 3824 ntAPPRIS P1 TSL 1 (best) BASIC2.55□□□□□ -2
CHKB-CPT1BH3BT56 AP1G1-207ENST00000564155 2723 ntTSL 1 (best) BASIC2.55□□□□□ -2
CHKB-CPT1BH3BT56 RMST-202ENST00000541282 2099 ntTSL 2 BASIC2.54□□□□□ -2
CHKB-CPT1BH3BT56 PPP1R2P3-201ENST00000522232 1991 ntAPPRIS P1 BASIC2.54□□□□□ -2
CHKB-CPT1BH3BT56 CRISP1-202ENST00000335847 1911 ntAPPRIS P1 TSL 1 (best) BASIC2.54□□□□□ -2
CHKB-CPT1BH3BT56 ANK3-202ENST00000355288 3811 ntTSL 1 (best) BASIC2.54□□□□□ -2
CHKB-CPT1BH3BT56 ZNF479-201ENST00000319636 1811 ntAPPRIS P1 TSL 1 (best) BASIC2.54□□□□□ -2
CHKB-CPT1BH3BT56 PHACTR4-201ENST00000373836 3107 ntAPPRIS P4 TSL 5 BASIC2.54□□□□□ -2
CHKB-CPT1BH3BT56 TM4SF18-201ENST00000296059 3852 ntAPPRIS P1 TSL 1 (best) BASIC2.54□□□□□ -2
CHKB-CPT1BH3BT56 OR2M7-201ENST00000317965 939 ntAPPRIS P1 BASIC2.54□□□□□ -2
CHKB-CPT1BH3BT56 HHLA3-203ENST00000370940 775 ntAPPRIS ALT2 TSL 1 (best) BASIC2.54□□□□□ -2
CHKB-CPT1BH3BT56 KRTAP19-8-201ENST00000382822 318 ntAPPRIS P1 BASIC2.54□□□□□ -2
CHKB-CPT1BH3BT56 U1.1-201ENST00000384101 164 ntBASIC2.54□□□□□ -2
CHKB-CPT1BH3BT56 RNU6-328P-201ENST00000390887 106 ntBASIC2.54□□□□□ -2
CHKB-CPT1BH3BT56 RNASE11-202ENST00000398009 1034 ntAPPRIS P2 TSL 5 BASIC2.54□□□□□ -2
CHKB-CPT1BH3BT56 LYPLA1P3-201ENST00000402650 695 ntBASIC2.54□□□□□ -2
CHKB-CPT1BH3BT56 RPL31-204ENST00000409038 817 ntTSL 2 BASIC2.54□□□□□ -2
CHKB-CPT1BH3BT56 RPL31-205ENST00000409320 716 ntAPPRIS ALT1 TSL 1 (best) BASIC2.54□□□□□ -2
CHKB-CPT1BH3BT56 RPL31-206ENST00000409650 770 ntAPPRIS ALT1 TSL 2 BASIC2.54□□□□□ -2
CHKB-CPT1BH3BT56 AL158834.2-201ENST00000415731 696 ntTSL 2 BASIC2.54□□□□□ -2
CHKB-CPT1BH3BT56 LINC01349-201ENST00000416343 497 ntTSL 3 BASIC2.54□□□□□ -2
CHKB-CPT1BH3BT56 MICG-208ENST00000416822 132 ntBASIC2.54□□□□□ -2
CHKB-CPT1BH3BT56 LINC01203-201ENST00000419566 580 ntTSL 2 BASIC2.54□□□□□ -2
CHKB-CPT1BH3BT56 PTP4A1P5-201ENST00000420305 455 ntBASIC2.54□□□□□ -2
CHKB-CPT1BH3BT56 AC013268.2-201ENST00000420753 337 ntBASIC2.54□□□□□ -2
CHKB-CPT1BH3BT56 RC3H1-IT1-201ENST00000421851 448 ntTSL 5 BASIC2.54□□□□□ -2
CHKB-CPT1BH3BT56 LINC00383-201ENST00000433664 817 ntTSL 3 BASIC2.54□□□□□ -2
CHKB-CPT1BH3BT56 MTND2P2-201ENST00000434633 945 ntBASIC2.54□□□□□ -2
CHKB-CPT1BH3BT56 AL139280.1-201ENST00000436340 463 ntTSL 3 BASIC2.54□□□□□ -2
CHKB-CPT1BH3BT56 IKZF3-212ENST00000439016 1246 ntTSL 5 BASIC2.54□□□□□ -2
CHKB-CPT1BH3BT56 AC009263.1-201ENST00000441193 1239 ntBASIC2.54□□□□□ -2
Retrieved 100 of 98,524 protein–RNA pairs in 123.4 ms