Protein–RNA interactions for Protein: Q9UBR4

LHX3, LIM/homeobox protein Lhx3, humanhuman

Predictions only

Length 397 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LHX3Q9UBR4 FILIP1-202ENST00000370020 4051 ntTSL 1 (best) BASIC4.9□□□□□ -1.63
LHX3Q9UBR4 FILIP1-203ENST00000393004 7807 ntTSL 1 (best) BASIC4.9□□□□□ -1.63
LHX3Q9UBR4 PROM1-220ENST00000540805 3908 ntAPPRIS ALT2 TSL 5 BASIC4.9□□□□□ -1.63
LHX3Q9UBR4 DICER1-212ENST00000541352 5621 ntTSL 1 (best) BASIC4.9□□□□□ -1.63
LHX3Q9UBR4 LINC02227-201ENST00000619068 3748 ntTSL 1 (best) BASIC4.9□□□□□ -1.63
LHX3Q9UBR4 HEATR5A-203ENST00000543095 7840 ntAPPRIS P1 TSL 5 BASIC4.9□□□□□ -1.63
LHX3Q9UBR4 SDAD1P1-202ENST00000524156 2051 ntBASIC4.9□□□□□ -1.63
LHX3Q9UBR4 NME8-203ENST00000440017 1879 ntAPPRIS P1 TSL 1 (best) BASIC4.9□□□□□ -1.63
LHX3Q9UBR4 ASB14-202ENST00000487349 3179 ntAPPRIS P2 TSL 1 (best) BASIC4.9□□□□□ -1.63
LHX3Q9UBR4 SDR42E1-201ENST00000328945 11566 ntAPPRIS P1 TSL 1 (best) BASIC4.9□□□□□ -1.63
LHX3Q9UBR4 DTNA-231ENST00000598774 2418 ntTSL 1 (best) BASIC4.89□□□□□ -1.63
LHX3Q9UBR4 ACADSB-201ENST00000358776 5859 ntAPPRIS P1 TSL 1 (best) BASIC4.89□□□□□ -1.63
LHX3Q9UBR4 CCNT1-205ENST00000618666 6915 ntTSL 2 BASIC4.89□□□□□ -1.63
LHX3Q9UBR4 USP8-204ENST00000425032 3559 ntTSL 2 BASIC4.89□□□□□ -1.63
LHX3Q9UBR4 DNAJC16-210ENST00000616884 5882 ntTSL 1 (best) BASIC4.89□□□□□ -1.63
LHX3Q9UBR4 USP28-213ENST00000544967 3498 ntTSL 1 (best) BASIC4.89□□□□□ -1.63
LHX3Q9UBR4 AC103591.2-201ENST00000265259 766 ntBASIC4.89□□□□□ -1.63
LHX3Q9UBR4 AC003975.1-201ENST00000411856 837 ntTSL 3 BASIC4.89□□□□□ -1.63
LHX3Q9UBR4 RSU1P3-201ENST00000412878 835 ntBASIC4.89□□□□□ -1.63
LHX3Q9UBR4 DPP10-AS3-201ENST00000417844 665 ntTSL 1 (best) BASIC4.89□□□□□ -1.63
LHX3Q9UBR4 LINC00993-201ENST00000420453 540 ntBASIC4.89□□□□□ -1.63
LHX3Q9UBR4 GLUD1P9-201ENST00000420997 1173 ntBASIC4.89□□□□□ -1.63
LHX3Q9UBR4 BACH1-IT3-201ENST00000429843 406 ntTSL 2 BASIC4.89□□□□□ -1.63
LHX3Q9UBR4 MTCO1P45-201ENST00000431457 267 ntBASIC4.89□□□□□ -1.63
LHX3Q9UBR4 AL049745.1-201ENST00000433953 286 ntBASIC4.89□□□□□ -1.63
LHX3Q9UBR4 HMGB3P10-201ENST00000434734 572 ntBASIC4.89□□□□□ -1.63
LHX3Q9UBR4 TCEA1P3-201ENST00000443005 880 ntBASIC4.89□□□□□ -1.63
LHX3Q9UBR4 AL160271.1-201ENST00000444708 829 ntTSL 3 BASIC4.89□□□□□ -1.63
LHX3Q9UBR4 AC114814.3-201ENST00000449362 663 ntTSL 2 BASIC4.89□□□□□ -1.63
LHX3Q9UBR4 AL590652.1-201ENST00000453790 850 ntTSL 3 BASIC4.89□□□□□ -1.63
LHX3Q9UBR4 GYPA-203ENST00000503627 318 ntTSL 1 (best) BASIC4.89□□□□□ -1.63
LHX3Q9UBR4 AC026782.2-201ENST00000510845 636 ntBASIC4.89□□□□□ -1.63
LHX3Q9UBR4 AC069272.1-201ENST00000514843 680 ntTSL 3 BASIC4.89□□□□□ -1.63
LHX3Q9UBR4 BUD31P1-201ENST00000521828 359 ntBASIC4.89□□□□□ -1.63
LHX3Q9UBR4 EIF4A2P5-201ENST00000529914 499 ntBASIC4.89□□□□□ -1.63
LHX3Q9UBR4 AC011595.3-201ENST00000546699 632 ntTSL 3 BASIC4.89□□□□□ -1.63
LHX3Q9UBR4 AC024909.1-201ENST00000549278 599 ntTSL 4 BASIC4.89□□□□□ -1.63
LHX3Q9UBR4 NOVA1-AS1-203ENST00000552101 468 ntTSL 3 BASIC4.89□□□□□ -1.63
LHX3Q9UBR4 AC104002.2-201ENST00000553919 318 ntTSL 5 BASIC4.89□□□□□ -1.63
LHX3Q9UBR4 AC093249.4-201ENST00000564755 259 ntBASIC4.89□□□□□ -1.63
LHX3Q9UBR4 AL391358.1-201ENST00000605342 190 ntBASIC4.89□□□□□ -1.63
LHX3Q9UBR4 AL121932.1-201ENST00000605542 214 ntBASIC4.89□□□□□ -1.63
LHX3Q9UBR4 AL133406.3-201ENST00000606817 541 ntBASIC4.89□□□□□ -1.63
LHX3Q9UBR4 FAM27B-201ENST00000610601 213 ntBASIC4.89□□□□□ -1.63
LHX3Q9UBR4 AC100827.5-201ENST00000615883 426 ntBASIC4.89□□□□□ -1.63
LHX3Q9UBR4 RMST_5.1-201ENST00000618704 126 ntBASIC4.89□□□□□ -1.63
LHX3Q9UBR4 AL133370.2-201ENST00000619934 439 ntBASIC4.89□□□□□ -1.63
LHX3Q9UBR4 AC105105.5-201ENST00000622635 1294 ntBASIC4.89□□□□□ -1.63
LHX3Q9UBR4 LDHA-225ENST00000625635 141 ntTSL 5 BASIC4.89□□□□□ -1.63
LHX3Q9UBR4 SCN2A-203ENST00000375437 8792 ntAPPRIS ALT1 TSL 5 BASIC4.89□□□□□ -1.63
LHX3Q9UBR4 DNAH5-201ENST00000265104 15633 ntAPPRIS P1 TSL 1 (best) BASIC4.89□□□□□ -1.63
LHX3Q9UBR4 AC139713.2-209ENST00000509873 1303 ntTSL 1 (best) BASIC4.89□□□□□ -1.63
LHX3Q9UBR4 UGT2A1-203ENST00000503640 2595 ntAPPRIS P1 TSL 1 (best) BASIC4.89□□□□□ -1.63
LHX3Q9UBR4 TLK1P1-201ENST00000456760 2440 ntBASIC4.88□□□□□ -1.63
LHX3Q9UBR4 TNRC6B-206ENST00000454349 18279 ntAPPRIS ALT2 TSL 2 BASIC4.88□□□□□ -1.63
LHX3Q9UBR4 OR1A1-203ENST00000641732 3832 ntAPPRIS P1 BASIC4.88□□□□□ -1.63
LHX3Q9UBR4 PIGN-241ENST00000640050 3154 ntAPPRIS P1 TSL 5 BASIC4.88□□□□□ -1.63
LHX3Q9UBR4 STON1-201ENST00000404752 5511 ntAPPRIS P1 TSL 1 (best) BASIC4.88□□□□□ -1.63
LHX3Q9UBR4 ARFGEF2-201ENST00000371917 8852 ntAPPRIS P1 TSL 1 (best) BASIC4.88□□□□□ -1.63
LHX3Q9UBR4 MECOM-201ENST00000264674 4900 ntTSL 1 (best) BASIC4.88□□□□□ -1.63
LHX3Q9UBR4 SENP1-205ENST00000549595 1932 ntAPPRIS ALT1 TSL 5 BASIC4.88□□□□□ -1.63
LHX3Q9UBR4 AKAP9-201ENST00000356239 12471 ntAPPRIS P2 TSL 1 (best) BASIC4.88□□□□□ -1.63
LHX3Q9UBR4 EDA2R-202ENST00000374719 3418 ntAPPRIS P3 TSL 1 (best) BASIC4.88□□□□□ -1.63
LHX3Q9UBR4 BDH2-201ENST00000296424 1126 ntAPPRIS P1 TSL 1 (best) BASIC4.88□□□□□ -1.63
LHX3Q9UBR4 OR8H1-201ENST00000313022 1038 ntAPPRIS P2 BASIC4.88□□□□□ -1.63
LHX3Q9UBR4 OR4N5-201ENST00000333629 927 ntAPPRIS P1 BASIC4.88□□□□□ -1.63
LHX3Q9UBR4 RN7SKP103-201ENST00000363848 320 ntBASIC4.88□□□□□ -1.63
LHX3Q9UBR4 OR51I1-201ENST00000380211 945 ntAPPRIS P1 BASIC4.88□□□□□ -1.63
LHX3Q9UBR4 MT-RNR1-201ENST00000389680 954 ntBASIC4.88□□□□□ -1.63
LHX3Q9UBR4 AL358178.1-201ENST00000407698 397 ntBASIC4.88□□□□□ -1.63
LHX3Q9UBR4 AL592078.1-201ENST00000421866 321 ntTSL 3 BASIC4.88□□□□□ -1.63
LHX3Q9UBR4 YY1P1-201ENST00000427625 668 ntBASIC4.88□□□□□ -1.63
LHX3Q9UBR4 RPS17P8-201ENST00000434525 335 ntBASIC4.88□□□□□ -1.63
LHX3Q9UBR4 AC074327.1-202ENST00000443523 369 ntTSL 2 BASIC4.88□□□□□ -1.63
LHX3Q9UBR4 TXNP2-201ENST00000443918 295 ntBASIC4.88□□□□□ -1.63
LHX3Q9UBR4 RPL36AP15-201ENST00000444514 266 ntBASIC4.88□□□□□ -1.63
LHX3Q9UBR4 OR1H1P-201ENST00000448731 937 ntBASIC4.88□□□□□ -1.63
LHX3Q9UBR4 BUD31P2-201ENST00000449374 300 ntBASIC4.88□□□□□ -1.63
LHX3Q9UBR4 CCRL1P1-201ENST00000449542 1053 ntBASIC4.88□□□□□ -1.63
LHX3Q9UBR4 AL353633.1-201ENST00000458480 382 ntTSL 3 BASIC4.88□□□□□ -1.63
LHX3Q9UBR4 AC107015.1-201ENST00000466902 747 ntBASIC4.88□□□□□ -1.63
LHX3Q9UBR4 AC026434.1-201ENST00000511474 454 ntTSL 3 BASIC4.88□□□□□ -1.63
LHX3Q9UBR4 AC106791.1-201ENST00000514616 827 ntTSL 5 BASIC4.88□□□□□ -1.63
LHX3Q9UBR4 AP006245.2-201ENST00000522004 300 ntBASIC4.88□□□□□ -1.63
LHX3Q9UBR4 AC138832.1-201ENST00000522871 556 ntBASIC4.88□□□□□ -1.63
LHX3Q9UBR4 AP001001.1-202ENST00000527594 692 ntTSL 3 BASIC4.88□□□□□ -1.63
LHX3Q9UBR4 AC068789.1-201ENST00000547942 577 ntTSL 2 BASIC4.88□□□□□ -1.63
LHX3Q9UBR4 AC133555.2-201ENST00000550213 292 ntBASIC4.88□□□□□ -1.63
LHX3Q9UBR4 AC090519.2-201ENST00000559034 655 ntTSL 5 BASIC4.88□□□□□ -1.63
LHX3Q9UBR4 AC015660.2-201ENST00000561362 323 ntTSL 3 BASIC4.88□□□□□ -1.63
LHX3Q9UBR4 AC022655.1-201ENST00000578039 288 ntTSL 3 BASIC4.88□□□□□ -1.63
LHX3Q9UBR4 AC005154.1-213ENST00000578572 445 ntTSL 3 BASIC4.88□□□□□ -1.63
LHX3Q9UBR4 MIR5699-201ENST00000578903 90 ntBASIC4.88□□□□□ -1.63
LHX3Q9UBR4 LINC00632-204ENST00000602830 597 ntTSL 4 BASIC4.88□□□□□ -1.63
LHX3Q9UBR4 AL512782.1-201ENST00000603093 364 ntBASIC4.88□□□□□ -1.63
LHX3Q9UBR4 C7orf77-201ENST00000616258 548 ntAPPRIS P1 TSL 1 (best) BASIC4.88□□□□□ -1.63
LHX3Q9UBR4 LINC02109-206ENST00000629527 854 ntTSL 5 BASIC4.88□□□□□ -1.63
LHX3Q9UBR4 AJ009632.2-207ENST00000634659 527 ntTSL 5 BASIC4.88□□□□□ -1.63
LHX3Q9UBR4 MIR99AHG-219ENST00000619222 3476 ntTSL 2 BASIC4.88□□□□□ -1.63
LHX3Q9UBR4 LINC00504-201ENST00000505089 4672 ntTSL 2 BASIC4.88□□□□□ -1.63
Retrieved 100 of 98,524 protein–RNA pairs in 114.2 ms