Protein–RNA interactions for Protein: Q53GS9

USP39, U4/U6.U5 tri-snRNP-associated protein 2, humanhuman

Known RBP Predictions only

Length 565 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP39Q53GS9 AC011473.1-201ENST00000601280 443 ntTSL 2 BASIC5.92□□□□□ -1.46
USP39Q53GS9 AC145423.1-201ENST00000605712 336 ntBASIC5.92□□□□□ -1.46
USP39Q53GS9 AC024060.1-201ENST00000607052 494 ntBASIC5.92□□□□□ -1.46
USP39Q53GS9 TUSC7.1-201ENST00000610969 165 ntBASIC5.92□□□□□ -1.46
USP39Q53GS9 AC087241.4-201ENST00000612441 480 ntBASIC5.92□□□□□ -1.46
USP39Q53GS9 AL354976.1-201ENST00000613843 387 ntBASIC5.92□□□□□ -1.46
USP39Q53GS9 AC016769.4-201ENST00000616893 535 ntBASIC5.92□□□□□ -1.46
USP39Q53GS9 AC015804.1-201ENST00000622935 435 ntBASIC5.92□□□□□ -1.46
USP39Q53GS9 AC018445.2-201ENST00000622987 260 ntBASIC5.92□□□□□ -1.46
USP39Q53GS9 SATB1-AS1-263ENST00000630022 622 ntTSL 5 BASIC5.92□□□□□ -1.46
USP39Q53GS9 MIR1322-201ENST00000638013 71 ntBASIC5.92□□□□□ -1.46
USP39Q53GS9 AC092724.1-201ENST00000624623 3397 ntBASIC5.92□□□□□ -1.46
USP39Q53GS9 PINCR-201ENST00000440955 2228 ntTSL 2 BASIC5.92□□□□□ -1.46
USP39Q53GS9 STYX-202ENST00000442123 4554 ntAPPRIS P1 TSL 1 (best) BASIC5.92□□□□□ -1.46
USP39Q53GS9 GTPBP8-205ENST00000473129 1518 ntTSL 2 BASIC5.92□□□□□ -1.46
USP39Q53GS9 YPEL5-202ENST00000379519 2499 ntAPPRIS P1 TSL 2 BASIC5.92□□□□□ -1.46
USP39Q53GS9 C9orf135-AS1-201ENST00000439418 1375 ntTSL 2 BASIC5.92□□□□□ -1.46
USP39Q53GS9 MUC17-201ENST00000306151 14247 ntAPPRIS P1 TSL 1 (best) BASIC5.92□□□□□ -1.46
USP39Q53GS9 PHC3-214ENST00000494943 5030 ntTSL 1 (best) BASIC5.91□□□□□ -1.46
USP39Q53GS9 AC112255.1-201ENST00000624070 2493 ntBASIC5.91□□□□□ -1.46
USP39Q53GS9 ARHGAP21-202ENST00000376410 3526 ntTSL 5 BASIC5.91□□□□□ -1.46
USP39Q53GS9 RANBP3L-202ENST00000502994 2278 ntAPPRIS ALT1 TSL 2 BASIC5.91□□□□□ -1.46
USP39Q53GS9 RYR2-201ENST00000360064 14850 ntAPPRIS ALT2 TSL 5 BASIC5.91□□□□□ -1.46
USP39Q53GS9 C8orf22-201ENST00000303202 1499 ntTSL 1 (best) BASIC5.91□□□□□ -1.46
USP39Q53GS9 CLCN3-201ENST00000347613 3635 ntAPPRIS P4 TSL 1 (best) BASIC5.91□□□□□ -1.46
USP39Q53GS9 PSG7-201ENST00000406070 2025 ntAPPRIS ALT2 TSL 1 (best) BASIC5.91□□□□□ -1.46
USP39Q53GS9 ZNF195-201ENST00000005082 2021 ntAPPRIS ALT2 TSL 1 (best) BASIC5.91□□□□□ -1.46
USP39Q53GS9 PMFBP1-207ENST00000537465 3935 ntAPPRIS ALT2 TSL 2 BASIC5.91□□□□□ -1.46
USP39Q53GS9 KARSP3-201ENST00000571212 1504 ntBASIC5.91□□□□□ -1.46
USP39Q53GS9 AC135895.1-201ENST00000360528 1058 ntTSL 5 BASIC5.91□□□□□ -1.46
USP39Q53GS9 RN7SKP186-201ENST00000365371 303 ntBASIC5.91□□□□□ -1.46
USP39Q53GS9 STMN1-202ENST00000374291 867 ntAPPRIS P1 TSL 2 BASIC5.91□□□□□ -1.46
USP39Q53GS9 TRIM22-201ENST00000379965 2989 ntAPPRIS P1 TSL 1 (best) BASIC5.91□□□□□ -1.46
USP39Q53GS9 SNORA70-201ENST00000384436 135 ntBASIC5.91□□□□□ -1.46
USP39Q53GS9 AL021331.1-201ENST00000402817 582 ntBASIC5.91□□□□□ -1.46
USP39Q53GS9 Z86062.1-201ENST00000406773 777 ntBASIC5.91□□□□□ -1.46
USP39Q53GS9 CoTC_ribozyme.1-201ENST00000408104 192 ntBASIC5.91□□□□□ -1.46
USP39Q53GS9 AF015720.1-201ENST00000412240 349 ntTSL 3 BASIC5.91□□□□□ -1.46
USP39Q53GS9 LINC00161-201ENST00000412526 870 ntTSL 2 BASIC5.91□□□□□ -1.46
USP39Q53GS9 OR6E1P-201ENST00000414424 923 ntBASIC5.91□□□□□ -1.46
USP39Q53GS9 ZNF736P2Y-201ENST00000416040 1279 ntBASIC5.91□□□□□ -1.46
USP39Q53GS9 OSBPL10-AS1-202ENST00000418728 458 ntTSL 5 BASIC5.91□□□□□ -1.46
USP39Q53GS9 LINC01760-201ENST00000423410 382 ntTSL 2 BASIC5.91□□□□□ -1.46
USP39Q53GS9 LINC01501-201ENST00000427523 409 ntTSL 3 BASIC5.91□□□□□ -1.46
USP39Q53GS9 DPPA2P1-201ENST00000428060 556 ntBASIC5.91□□□□□ -1.46
USP39Q53GS9 AL138775.1-201ENST00000429539 575 ntTSL 1 (best) BASIC5.91□□□□□ -1.46
USP39Q53GS9 TPTE2P1-203ENST00000434100 514 ntTSL 3 BASIC5.91□□□□□ -1.46
USP39Q53GS9 GAPDHP58-201ENST00000438477 1006 ntBASIC5.91□□□□□ -1.46
USP39Q53GS9 AC024084.1-201ENST00000440744 455 ntTSL 5 BASIC5.91□□□□□ -1.46
USP39Q53GS9 AC005297.1-201ENST00000444765 862 ntBASIC5.91□□□□□ -1.46
USP39Q53GS9 TAF9P1-201ENST00000445421 515 ntBASIC5.91□□□□□ -1.46
USP39Q53GS9 MTCYBP3-201ENST00000445588 1137 ntBASIC5.91□□□□□ -1.46
USP39Q53GS9 TAF9P2-201ENST00000454958 515 ntBASIC5.91□□□□□ -1.46
USP39Q53GS9 RPS7P7-201ENST00000463499 571 ntBASIC5.91□□□□□ -1.46
USP39Q53GS9 RPS17P15-201ENST00000475609 349 ntBASIC5.91□□□□□ -1.46
USP39Q53GS9 AC018816.1-205ENST00000489771 509 ntTSL 2 BASIC5.91□□□□□ -1.46
USP39Q53GS9 RPS23P1-201ENST00000491662 432 ntBASIC5.91□□□□□ -1.46
USP39Q53GS9 AC010460.1-201ENST00000507087 466 ntBASIC5.91□□□□□ -1.46
USP39Q53GS9 FABP5P6-201ENST00000510588 409 ntBASIC5.91□□□□□ -1.46
USP39Q53GS9 AC131953.1-201ENST00000513127 477 ntTSL 2 BASIC5.91□□□□□ -1.46
USP39Q53GS9 AC087276.4-201ENST00000530042 444 ntTSL 3 BASIC5.91□□□□□ -1.46
USP39Q53GS9 OR10G5P-201ENST00000532733 358 ntBASIC5.91□□□□□ -1.46
USP39Q53GS9 APPL2-203ENST00000546731 684 ntTSL 2 BASIC5.91□□□□□ -1.46
USP39Q53GS9 AL133166.1-201ENST00000551040 1034 ntTSL 4 BASIC5.91□□□□□ -1.46
USP39Q53GS9 LINC02131-201ENST00000563289 419 ntTSL 2 BASIC5.91□□□□□ -1.46
USP39Q53GS9 AC100821.2-201ENST00000565668 440 ntTSL 2 BASIC5.91□□□□□ -1.46
USP39Q53GS9 AC068135.2-201ENST00000569293 1028 ntBASIC5.91□□□□□ -1.46
USP39Q53GS9 AC011507.1-201ENST00000585364 567 ntTSL 4 BASIC5.91□□□□□ -1.46
USP39Q53GS9 AC119403.2-201ENST00000590960 598 ntBASIC5.91□□□□□ -1.46
USP39Q53GS9 AC099566.1-211ENST00000595188 737 ntTSL 5 BASIC5.91□□□□□ -1.46
USP39Q53GS9 AC078795.2-201ENST00000602835 1252 ntBASIC5.91□□□□□ -1.46
USP39Q53GS9 AC099566.1-205ENST00000609411 657 ntTSL 5 BASIC5.91□□□□□ -1.46
USP39Q53GS9 AP000254.1-201ENST00000609934 520 ntBASIC5.91□□□□□ -1.46
USP39Q53GS9 AC017083.3-201ENST00000609955 700 ntBASIC5.91□□□□□ -1.46
USP39Q53GS9 AL450489.1-201ENST00000612071 468 ntBASIC5.91□□□□□ -1.46
USP39Q53GS9 AC092794.1-201ENST00000612734 582 ntBASIC5.91□□□□□ -1.46
USP39Q53GS9 OR8G7P-201ENST00000616658 848 ntBASIC5.91□□□□□ -1.46
USP39Q53GS9 AC037198.3-201ENST00000616754 526 ntBASIC5.91□□□□□ -1.46
USP39Q53GS9 UGP2-232ENST00000640075 567 ntTSL 5 BASIC5.91□□□□□ -1.46
USP39Q53GS9 AC092451.3-201ENST00000625067 1343 ntBASIC5.91□□□□□ -1.46
USP39Q53GS9 MSR1-204ENST00000381998 2826 ntTSL 1 (best) BASIC5.91□□□□□ -1.46
USP39Q53GS9 DOPEY1-201ENST00000237163 7995 ntAPPRIS ALT1 TSL 5 BASIC5.91□□□□□ -1.46
USP39Q53GS9 CNTN1-208ENST00000551295 5557 ntAPPRIS P1 TSL 1 (best) BASIC5.91□□□□□ -1.46
USP39Q53GS9 SATB1-209ENST00000454909 3755 ntAPPRIS P1 TSL 1 (best) BASIC5.91□□□□□ -1.46
USP39Q53GS9 AC092958.1-201ENST00000467198 2569 ntTSL 2 BASIC5.91□□□□□ -1.46
USP39Q53GS9 LINC01748-203ENST00000634836 3229 ntTSL 5 BASIC5.91□□□□□ -1.46
USP39Q53GS9 SLC12A6-204ENST00000397707 4194 ntTSL 1 (best) BASIC5.91□□□□□ -1.46
USP39Q53GS9 FAM205A-201ENST00000378788 4225 ntAPPRIS P1 TSL 2 BASIC5.91□□□□□ -1.46
USP39Q53GS9 SLC10A7-202ENST00000394059 1730 ntTSL 1 (best) BASIC5.91□□□□□ -1.46
USP39Q53GS9 NOVA1-206ENST00000539517 3912 ntAPPRIS P4 TSL 1 (best) BASIC5.91□□□□□ -1.46
USP39Q53GS9 AC022164.1-201ENST00000568767 2673 ntBASIC5.91□□□□□ -1.46
USP39Q53GS9 PI15-202ENST00000523773 1413 ntAPPRIS P1 TSL 1 (best) BASIC5.91□□□□□ -1.46
USP39Q53GS9 KCNH5-201ENST00000322893 11290 ntAPPRIS P1 TSL 1 (best) BASIC5.91□□□□□ -1.46
USP39Q53GS9 ARHGEF12-213ENST00000532993 8753 ntTSL 1 (best) BASIC5.9□□□□□ -1.46
USP39Q53GS9 NOL8-221ENST00000542053 3393 ntTSL 5 BASIC5.9□□□□□ -1.46
USP39Q53GS9 TCF7L2-219ENST00000542695 4136 ntTSL 5 BASIC5.9□□□□□ -1.46
USP39Q53GS9 NOL4-203ENST00000538587 1979 ntTSL 2 BASIC5.9□□□□□ -1.46
USP39Q53GS9 CASC15-207ENST00000607048 1634 ntTSL 2 BASIC5.9□□□□□ -1.46
USP39Q53GS9 RUFY3-202ENST00000381006 3098 ntAPPRIS P1 TSL 5 BASIC5.9□□□□□ -1.46
USP39Q53GS9 AP002512.4-202ENST00000641599 4530 ntBASIC5.9□□□□□ -1.46
Retrieved 100 of 98,524 protein–RNA pairs in 94.6 ms