Protein–RNA interactions for Protein: Q53GG5

PDLIM3, PDZ and LIM domain protein 3, humanhuman

Predicted RBP Predictions only

Length 364 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM3Q53GG5 AC145207.9-201ENST00000623802 325 ntBASIC4.6□□□□□ -1.67
PDLIM3Q53GG5 LINC01708-202ENST00000634316 859 ntTSL 5 BASIC4.6□□□□□ -1.67
PDLIM3Q53GG5 AC092375.1-202ENST00000639452 404 ntTSL 3 BASIC4.6□□□□□ -1.67
PDLIM3Q53GG5 FANCD2-202ENST00000383807 5102 ntAPPRIS ALT2 TSL 1 (best) BASIC4.6□□□□□ -1.67
PDLIM3Q53GG5 AK9-201ENST00000285397 2566 ntTSL 1 (best) BASIC4.6□□□□□ -1.67
PDLIM3Q53GG5 SEC24D-211ENST00000511481 2626 ntTSL 1 (best) BASIC4.6□□□□□ -1.67
PDLIM3Q53GG5 FKBP7-204ENST00000424785 2834 ntAPPRIS P3 TSL 1 (best) BASIC4.6□□□□□ -1.67
PDLIM3Q53GG5 AC104118.1-201ENST00000607625 1589 ntBASIC4.6□□□□□ -1.67
PDLIM3Q53GG5 PIGN-241ENST00000640050 3154 ntAPPRIS P1 TSL 5 BASIC4.6□□□□□ -1.67
PDLIM3Q53GG5 OR2J3-202ENST00000641151 3297 ntAPPRIS P1 BASIC4.6□□□□□ -1.67
PDLIM3Q53GG5 BCLAF1-201ENST00000353331 7110 ntTSL 5 BASIC4.6□□□□□ -1.67
PDLIM3Q53GG5 LINC01676-202ENST00000435253 1849 ntTSL 1 (best) BASIC4.6□□□□□ -1.67
PDLIM3Q53GG5 KCNH7-205ENST00000621889 1893 ntTSL 5 BASIC4.6□□□□□ -1.67
PDLIM3Q53GG5 SPATA2P1-201ENST00000431223 2055 ntBASIC4.6□□□□□ -1.67
PDLIM3Q53GG5 AC093535.2-201ENST00000624769 2326 ntBASIC4.6□□□□□ -1.67
PDLIM3Q53GG5 PDE4B-201ENST00000329654 3998 ntTSL 1 (best) BASIC4.59□□□□□ -1.67
PDLIM3Q53GG5 ZNF207-203ENST00000394670 13781 ntAPPRIS ALT1 TSL 1 (best) BASIC4.59□□□□□ -1.67
PDLIM3Q53GG5 CNTN5-201ENST00000279463 5925 ntTSL 5 BASIC4.59□□□□□ -1.67
PDLIM3Q53GG5 CFAP47-202ENST00000313548 1549 ntAPPRIS ALT2 TSL 1 (best) BASIC4.59□□□□□ -1.67
PDLIM3Q53GG5 AL121886.1-201ENST00000358609 435 ntBASIC4.59□□□□□ -1.67
PDLIM3Q53GG5 RNU6-609P-201ENST00000365459 107 ntBASIC4.59□□□□□ -1.67
PDLIM3Q53GG5 ADAM18-202ENST00000379866 2314 ntAPPRIS ALT2 TSL 1 (best) BASIC4.59□□□□□ -1.67
PDLIM3Q53GG5 MPDZ-204ENST00000381022 7589 ntAPPRIS ALT2 TSL 5 BASIC4.59□□□□□ -1.67
PDLIM3Q53GG5 MIR620-201ENST00000385232 95 ntBASIC4.59□□□□□ -1.67
PDLIM3Q53GG5 ATP5HP3-201ENST00000396994 486 ntBASIC4.59□□□□□ -1.67
PDLIM3Q53GG5 AL589647.1-201ENST00000402485 466 ntBASIC4.59□□□□□ -1.67
PDLIM3Q53GG5 PUS10-203ENST00000407787 1820 ntAPPRIS P1 TSL 2 BASIC4.59□□□□□ -1.67
PDLIM3Q53GG5 AL031674.1-202ENST00000413070 465 ntTSL 3 BASIC4.59□□□□□ -1.67
PDLIM3Q53GG5 BX284656.2-201ENST00000414483 498 ntTSL 2 BASIC4.59□□□□□ -1.67
PDLIM3Q53GG5 AC079809.1-201ENST00000415468 276 ntBASIC4.59□□□□□ -1.67
PDLIM3Q53GG5 AC009313.2-201ENST00000417893 1941 ntBASIC4.59□□□□□ -1.67
PDLIM3Q53GG5 RPS26P13-201ENST00000419030 330 ntBASIC4.59□□□□□ -1.67
PDLIM3Q53GG5 AC099336.2-201ENST00000422457 254 ntBASIC4.59□□□□□ -1.67
PDLIM3Q53GG5 RPS26P47-201ENST00000427219 348 ntBASIC4.59□□□□□ -1.67
PDLIM3Q53GG5 AL353597.2-202ENST00000434901 373 ntBASIC4.59□□□□□ -1.67
PDLIM3Q53GG5 AC007655.1-201ENST00000444324 357 ntTSL 3 BASIC4.59□□□□□ -1.67
PDLIM3Q53GG5 AC099560.2-201ENST00000457554 255 ntBASIC4.59□□□□□ -1.67
PDLIM3Q53GG5 AC092691.2-201ENST00000461787 803 ntBASIC4.59□□□□□ -1.67
PDLIM3Q53GG5 RPS23P2-201ENST00000463671 415 ntBASIC4.59□□□□□ -1.67
PDLIM3Q53GG5 AC073359.2-201ENST00000478814 351 ntTSL 3 BASIC4.59□□□□□ -1.67
PDLIM3Q53GG5 RPSAP51-201ENST00000497462 645 ntBASIC4.59□□□□□ -1.67
PDLIM3Q53GG5 AC098679.1-203ENST00000505532 2227 ntTSL 2 BASIC4.59□□□□□ -1.67
PDLIM3Q53GG5 AC008575.1-201ENST00000520401 694 ntAPPRIS P1 TSL 3 BASIC4.59□□□□□ -1.67
PDLIM3Q53GG5 AP000676.2-201ENST00000529711 301 ntBASIC4.59□□□□□ -1.67
PDLIM3Q53GG5 CASP5-209ENST00000531367 879 ntTSL 5 BASIC4.59□□□□□ -1.67
PDLIM3Q53GG5 EQTN-204ENST00000537675 879 ntAPPRIS ALT2 TSL 1 (best) BASIC4.59□□□□□ -1.67
PDLIM3Q53GG5 LZTFL1-216ENST00000539217 4113 ntTSL 2 BASIC4.59□□□□□ -1.67
PDLIM3Q53GG5 AC244502.1-203ENST00000541008 576 ntTSL 4 BASIC4.59□□□□□ -1.67
PDLIM3Q53GG5 CDKN3-206ENST00000541304 1070 ntTSL 2 BASIC4.59□□□□□ -1.67
PDLIM3Q53GG5 AC068768.1-204ENST00000544890 796 ntTSL 4 BASIC4.59□□□□□ -1.67
PDLIM3Q53GG5 PCED1B-AS1-203ENST00000547626 420 ntTSL 2 BASIC4.59□□□□□ -1.67
PDLIM3Q53GG5 AC090680.2-201ENST00000550279 742 ntTSL 3 BASIC4.59□□□□□ -1.67
PDLIM3Q53GG5 AC112693.1-201ENST00000555297 682 ntTSL 3 BASIC4.59□□□□□ -1.67
PDLIM3Q53GG5 AC092140.1-201ENST00000563090 549 ntTSL 3 BASIC4.59□□□□□ -1.67
PDLIM3Q53GG5 FOPNL-207ENST00000575073 530 ntTSL 2 BASIC4.59□□□□□ -1.67
PDLIM3Q53GG5 MIR4330-201ENST00000579077 105 ntBASIC4.59□□□□□ -1.67
PDLIM3Q53GG5 AC145207.6-201ENST00000579981 782 ntTSL 5 BASIC4.59□□□□□ -1.67
PDLIM3Q53GG5 AC068408.2-201ENST00000584566 439 ntTSL 3 BASIC4.59□□□□□ -1.67
PDLIM3Q53GG5 AC015878.1-201ENST00000584611 679 ntTSL 3 BASIC4.59□□□□□ -1.67
PDLIM3Q53GG5 OR1AB1P-201ENST00000585564 761 ntBASIC4.59□□□□□ -1.67
PDLIM3Q53GG5 ZRANB2-AS2-212ENST00000590186 686 ntTSL 5 BASIC4.59□□□□□ -1.67
PDLIM3Q53GG5 AC011473.1-201ENST00000601280 443 ntTSL 2 BASIC4.59□□□□□ -1.67
PDLIM3Q53GG5 AC024075.3-201ENST00000601687 453 ntTSL 5 BASIC4.59□□□□□ -1.67
PDLIM3Q53GG5 AC004817.4-201ENST00000602396 3625 ntBASIC4.59□□□□□ -1.67
PDLIM3Q53GG5 SUMO2P14-201ENST00000604488 293 ntBASIC4.59□□□□□ -1.67
PDLIM3Q53GG5 BNIP3P35-201ENST00000604530 490 ntBASIC4.59□□□□□ -1.67
PDLIM3Q53GG5 FAM27E4-201ENST00000605259 342 ntBASIC4.59□□□□□ -1.67
PDLIM3Q53GG5 AC027088.4-201ENST00000611559 1947 ntBASIC4.59□□□□□ -1.67
PDLIM3Q53GG5 AL591926.2-202ENST00000615199 719 ntTSL 5 BASIC4.59□□□□□ -1.67
PDLIM3Q53GG5 RAB18-209ENST00000621805 4894 ntTSL 1 (best) BASIC4.59□□□□□ -1.67
PDLIM3Q53GG5 NEK3-211ENST00000629912 141 ntTSL 5 BASIC4.59□□□□□ -1.67
PDLIM3Q53GG5 OR2M2-202ENST00000641211 1229 ntAPPRIS P1 BASIC4.59□□□□□ -1.67
PDLIM3Q53GG5 OR2M2-203ENST00000641836 1151 ntAPPRIS P1 BASIC4.59□□□□□ -1.67
PDLIM3Q53GG5 MLIP-213ENST00000514921 5743 ntAPPRIS ALT2 TSL 1 (best) BASIC4.59□□□□□ -1.68
PDLIM3Q53GG5 SMG1P4-204ENST00000523028 4131 ntBASIC4.59□□□□□ -1.68
PDLIM3Q53GG5 ZNF343-207ENST00000612935 3675 ntAPPRIS ALT2 TSL 5 BASIC4.59□□□□□ -1.68
PDLIM3Q53GG5 LMO3-209ENST00000447609 3365 ntAPPRIS P1 TSL 1 (best) BASIC4.59□□□□□ -1.68
PDLIM3Q53GG5 SKP1-202ENST00000353411 9474 ntAPPRIS P4 TSL 1 (best) BASIC4.59□□□□□ -1.68
PDLIM3Q53GG5 NDRG3-201ENST00000349004 2964 ntAPPRIS P4 TSL 1 (best) BASIC4.59□□□□□ -1.68
PDLIM3Q53GG5 OR4E2-202ENST00000641524 2855 ntAPPRIS P1 BASIC4.59□□□□□ -1.68
PDLIM3Q53GG5 PRKAA1-204ENST00000397128 5088 ntAPPRIS P1 TSL 1 (best) BASIC4.58□□□□□ -1.68
PDLIM3Q53GG5 TDRD3-204ENST00000377894 2484 ntTSL 2 BASIC4.58□□□□□ -1.68
PDLIM3Q53GG5 AC090017.1-201ENST00000548612 1779 ntBASIC4.58□□□□□ -1.68
PDLIM3Q53GG5 ATP13A3-211ENST00000619199 5227 ntTSL 2 BASIC4.58□□□□□ -1.68
PDLIM3Q53GG5 ALB-209ENST00000503124 1741 ntTSL 5 BASIC4.58□□□□□ -1.68
PDLIM3Q53GG5 PPP1R9A-207ENST00000433881 9928 ntAPPRIS P1 TSL 5 BASIC4.58□□□□□ -1.68
PDLIM3Q53GG5 KCNRG-202ENST00000360473 1623 ntTSL 1 (best) BASIC4.58□□□□□ -1.68
PDLIM3Q53GG5 OFD1P6Y-201ENST00000432335 1637 ntTSL 2 BASIC4.58□□□□□ -1.68
PDLIM3Q53GG5 TTTY9B-201ENST00000433794 1637 ntTSL 2 BASIC4.58□□□□□ -1.68
PDLIM3Q53GG5 AL158835.1-203ENST00000415305 3149 ntTSL 1 (best) BASIC4.58□□□□□ -1.68
PDLIM3Q53GG5 DNAJC9-AS1-204ENST00000440197 2865 ntTSL 1 (best) BASIC4.58□□□□□ -1.68
PDLIM3Q53GG5 ANKRD36B-202ENST00000359901 4297 ntAPPRIS P1 TSL 5 BASIC4.58□□□□□ -1.68
PDLIM3Q53GG5 XIRP2-207ENST00000628543 12182 ntTSL 5 BASIC4.58□□□□□ -1.68
PDLIM3Q53GG5 DROSHA-212ENST00000511367 5305 ntAPPRIS P4 TSL 1 (best) BASIC4.58□□□□□ -1.68
PDLIM3Q53GG5 DLX6-AS1-201ENST00000430027 15364 ntTSL 2 BASIC4.58□□□□□ -1.68
PDLIM3Q53GG5 SSX3-201ENST00000298396 1232 ntAPPRIS P1 TSL 1 (best) BASIC4.58□□□□□ -1.68
PDLIM3Q53GG5 CFHR1-201ENST00000320493 1271 ntAPPRIS P1 TSL 1 (best) BASIC4.58□□□□□ -1.68
PDLIM3Q53GG5 AL353751.1-201ENST00000354541 495 ntTSL 3 BASIC4.58□□□□□ -1.68
PDLIM3Q53GG5 OR51B6-201ENST00000380219 939 ntAPPRIS P1 BASIC4.58□□□□□ -1.68
PDLIM3Q53GG5 OR51F1-201ENST00000380383 960 ntAPPRIS P5 BASIC4.58□□□□□ -1.68
Retrieved 100 of 98,524 protein–RNA pairs in 144 ms