Protein–RNA interactions for Protein: P49916

LIG3, DNA ligase 3, humanhuman

Predictions only

Length 1,009 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3P49916 HMGB3P10-201ENST00000434734 572 ntBASIC6.68□□□□□ -1.34
LIG3P49916 AL138767.3-201ENST00000438082 495 ntTSL 3 BASIC6.68□□□□□ -1.34
LIG3P49916 AL138830.2-202ENST00000446358 786 ntTSL 2 BASIC6.68□□□□□ -1.34
LIG3P49916 AL592447.1-201ENST00000447592 540 ntBASIC6.68□□□□□ -1.34
LIG3P49916 PCBP1-AS1-237ENST00000452431 1194 ntTSL 4 BASIC6.68□□□□□ -1.34
LIG3P49916 NDUFB3-204ENST00000454214 547 ntAPPRIS P1 TSL 2 BASIC6.68□□□□□ -1.34
LIG3P49916 HBBP1-202ENST00000454892 455 ntTSL 2 BASIC6.68□□□□□ -1.34
LIG3P49916 DNAJC19P1-201ENST00000455312 319 ntBASIC6.68□□□□□ -1.34
LIG3P49916 RN7SL836P-201ENST00000476140 296 ntBASIC6.68□□□□□ -1.34
LIG3P49916 AC096751.1-202ENST00000502691 1067 ntBASIC6.68□□□□□ -1.34
LIG3P49916 AC092349.1-201ENST00000504903 310 ntBASIC6.68□□□□□ -1.34
LIG3P49916 SCOC-206ENST00000506322 687 ntAPPRIS ALT1 TSL 5 BASIC6.68□□□□□ -1.34
LIG3P49916 RPL37P25-201ENST00000507308 276 ntBASIC6.68□□□□□ -1.34
LIG3P49916 AC008549.1-201ENST00000512900 643 ntBASIC6.68□□□□□ -1.34
LIG3P49916 AC138517.1-201ENST00000515724 568 ntBASIC6.68□□□□□ -1.34
LIG3P49916 ATP6V0E1-202ENST00000517669 502 ntAPPRIS P1 TSL 1 (best) BASIC6.68□□□□□ -1.34
LIG3P49916 WDYHV1-203ENST00000518125 880 ntTSL 2 BASIC6.68□□□□□ -1.34
LIG3P49916 AP003100.1-201ENST00000524772 832 ntTSL 3 BASIC6.68□□□□□ -1.34
LIG3P49916 OR8G3P-201ENST00000533406 921 ntBASIC6.68□□□□□ -1.34
LIG3P49916 AP002370.2-202ENST00000533669 908 ntTSL 5 BASIC6.68□□□□□ -1.34
LIG3P49916 C14orf105-210ENST00000534126 1030 ntAPPRIS ALT1 TSL 1 (best) BASIC6.68□□□□□ -1.34
LIG3P49916 AC117505.1-202ENST00000547027 566 ntTSL 3 BASIC6.68□□□□□ -1.34
LIG3P49916 AC068135.2-201ENST00000569293 1028 ntBASIC6.68□□□□□ -1.34
LIG3P49916 RN7SL270P-201ENST00000579643 281 ntBASIC6.68□□□□□ -1.34
LIG3P49916 Metazoa_SRP.202-201ENST00000585071 281 ntBASIC6.68□□□□□ -1.34
LIG3P49916 LINC01855-201ENST00000585520 396 ntTSL 3 BASIC6.68□□□□□ -1.34
LIG3P49916 BNIP3P30-201ENST00000601184 574 ntBASIC6.68□□□□□ -1.34
LIG3P49916 AC092902.3-201ENST00000610060 373 ntTSL 3 BASIC6.68□□□□□ -1.34
LIG3P49916 C8orf59-208ENST00000612809 475 ntAPPRIS P1 TSL 1 (best) BASIC6.68□□□□□ -1.34
LIG3P49916 EDRF1-AS1-210ENST00000613304 569 ntTSL 5 BASIC6.68□□□□□ -1.34
LIG3P49916 AC015819.1-201ENST00000613588 663 ntBASIC6.68□□□□□ -1.34
LIG3P49916 AC073348.1-201ENST00000623002 331 ntBASIC6.68□□□□□ -1.34
LIG3P49916 CENPK-201ENST00000242872 1576 ntAPPRIS P1 TSL 1 (best) BASIC6.68□□□□□ -1.34
LIG3P49916 SRBD1-201ENST00000263736 3681 ntAPPRIS P1 TSL 2 BASIC6.68□□□□□ -1.34
LIG3P49916 DTNA-230ENST00000598334 3201 ntTSL 1 (best) BASIC6.68□□□□□ -1.34
LIG3P49916 ATP5A1P4-201ENST00000556888 1605 ntBASIC6.68□□□□□ -1.34
LIG3P49916 LINC01179-201ENST00000507838 2163 ntTSL 1 (best) BASIC6.68□□□□□ -1.34
LIG3P49916 ARHGAP20-204ENST00000528829 5880 ntAPPRIS ALT2 TSL 1 (best) BASIC6.68□□□□□ -1.34
LIG3P49916 ESRRG-212ENST00000463665 3359 ntTSL 2 BASIC6.68□□□□□ -1.34
LIG3P49916 AC025470.1-201ENST00000510053 2032 ntBASIC6.67□□□□□ -1.34
LIG3P49916 MAGI2-222ENST00000636039 5671 ntTSL 5 BASIC6.67□□□□□ -1.34
LIG3P49916 TCF12-213ENST00000559703 1544 ntTSL 5 BASIC6.67□□□□□ -1.34
LIG3P49916 FGF7P2-201ENST00000332473 296 ntBASIC6.67□□□□□ -1.34
LIG3P49916 RNU6-839P-201ENST00000363347 108 ntBASIC6.67□□□□□ -1.34
LIG3P49916 Y_RNA.302-201ENST00000364997 102 ntBASIC6.67□□□□□ -1.34
LIG3P49916 RNA5SP85-201ENST00000365378 119 ntBASIC6.67□□□□□ -1.34
LIG3P49916 SNAPC3-201ENST00000380799 753 ntTSL 3 BASIC6.67□□□□□ -1.34
LIG3P49916 MIR217-201ENST00000384817 110 ntBASIC6.67□□□□□ -1.34
LIG3P49916 CYCSP45-201ENST00000402289 315 ntBASIC6.67□□□□□ -1.34
LIG3P49916 VN1R12P-201ENST00000403778 876 ntBASIC6.67□□□□□ -1.34
LIG3P49916 RN7SKP296-201ENST00000411185 341 ntBASIC6.67□□□□□ -1.34
LIG3P49916 AC084816.1-201ENST00000413794 565 ntTSL 4 BASIC6.67□□□□□ -1.34
LIG3P49916 AL359962.1-201ENST00000417969 303 ntTSL 5 BASIC6.67□□□□□ -1.34
LIG3P49916 EFCAB14-AS1-201ENST00000418985 491 ntTSL 3 BASIC6.67□□□□□ -1.34
LIG3P49916 BBS9-205ENST00000425508 1252 ntTSL 1 (best) BASIC6.67□□□□□ -1.34
LIG3P49916 AL139415.2-201ENST00000431968 163 ntBASIC6.67□□□□□ -1.34
LIG3P49916 E2F3-IT1-201ENST00000433182 400 ntTSL 3 BASIC6.67□□□□□ -1.34
LIG3P49916 AC128677.1-201ENST00000436016 442 ntBASIC6.67□□□□□ -1.34
LIG3P49916 AC092106.2-201ENST00000436597 487 ntBASIC6.67□□□□□ -1.34
LIG3P49916 AC091862.1-201ENST00000438016 1100 ntBASIC6.67□□□□□ -1.34
LIG3P49916 GAPDHP37-201ENST00000442317 968 ntBASIC6.67□□□□□ -1.34
LIG3P49916 AC016395.1-201ENST00000444086 465 ntTSL 3 BASIC6.67□□□□□ -1.34
LIG3P49916 UBBP5-201ENST00000446970 266 ntBASIC6.67□□□□□ -1.34
LIG3P49916 AL935212.3-201ENST00000450729 284 ntBASIC6.67□□□□□ -1.34
LIG3P49916 YRDCP3-201ENST00000456507 480 ntBASIC6.67□□□□□ -1.34
LIG3P49916 RNU7-27P-201ENST00000459281 62 ntBASIC6.67□□□□□ -1.34
LIG3P49916 AC079841.1-201ENST00000481228 950 ntBASIC6.67□□□□□ -1.34
LIG3P49916 GTF2F2P1-201ENST00000511083 675 ntBASIC6.67□□□□□ -1.34
LIG3P49916 AC097501.1-202ENST00000514707 313 ntTSL 3 BASIC6.67□□□□□ -1.34
LIG3P49916 AC026719.2-201ENST00000515656 295 ntTSL 3 BASIC6.67□□□□□ -1.34
LIG3P49916 RN7SKP31-201ENST00000516354 278 ntBASIC6.67□□□□□ -1.34
LIG3P49916 OR5AK1P-201ENST00000524837 922 ntBASIC6.67□□□□□ -1.34
LIG3P49916 AC135983.3-201ENST00000528049 1226 ntBASIC6.67□□□□□ -1.34
LIG3P49916 SNHG1-217ENST00000541578 588 ntTSL 3 BASIC6.67□□□□□ -1.34
LIG3P49916 AC023796.2-201ENST00000545410 451 ntTSL 3 BASIC6.67□□□□□ -1.34
LIG3P49916 TMEM116-208ENST00000549537 1229 ntAPPRIS ALT2 TSL 2 BASIC6.67□□□□□ -1.34
LIG3P49916 AC007686.2-201ENST00000554043 469 ntTSL 2 BASIC6.67□□□□□ -1.34
LIG3P49916 AC066612.2-201ENST00000559875 695 ntTSL 2 BASIC6.67□□□□□ -1.34
LIG3P49916 AC004232.1-201ENST00000571388 208 ntBASIC6.67□□□□□ -1.34
LIG3P49916 MIR3157-201ENST00000578688 85 ntBASIC6.67□□□□□ -1.34
LIG3P49916 AL606834.2-201ENST00000602954 668 ntBASIC6.67□□□□□ -1.34
LIG3P49916 AC005899.7-201ENST00000618199 588 ntBASIC6.67□□□□□ -1.34
LIG3P49916 AP000577.1-201ENST00000624366 878 ntBASIC6.67□□□□□ -1.34
LIG3P49916 AF067845.5-201ENST00000633906 437 ntTSL 3 BASIC6.67□□□□□ -1.34
LIG3P49916 AC024475.3-203ENST00000634971 854 ntTSL 5 BASIC6.67□□□□□ -1.34
LIG3P49916 AL049767.1-201ENST00000636811 514 ntTSL 5 BASIC6.67□□□□□ -1.34
LIG3P49916 CLEC4D-201ENST00000299665 1936 ntAPPRIS P1 TSL 1 (best) BASIC6.67□□□□□ -1.34
LIG3P49916 ZNF711-202ENST00000360700 4844 ntAPPRIS ALT2 TSL 1 (best) BASIC6.67□□□□□ -1.34
LIG3P49916 TIMM9-202ENST00000395159 1336 ntAPPRIS P1 TSL 1 (best) BASIC6.67□□□□□ -1.34
LIG3P49916 AC139713.2-209ENST00000509873 1303 ntTSL 1 (best) BASIC6.67□□□□□ -1.34
LIG3P49916 MGST1-207ENST00000535309 1331 ntTSL 1 (best) BASIC6.67□□□□□ -1.34
LIG3P49916 DNAJC10-208ENST00000537515 1669 ntTSL 1 (best) BASIC6.67□□□□□ -1.34
LIG3P49916 AC107021.2-201ENST00000567714 2095 ntBASIC6.67□□□□□ -1.34
LIG3P49916 SETD2-202ENST00000409792 8142 ntAPPRIS P1 TSL 5 BASIC6.67□□□□□ -1.34
LIG3P49916 GJA10-203ENST00000638915 1479 ntAPPRIS ALT2 TSL 5 BASIC6.66□□□□□ -1.34
LIG3P49916 AQP9-201ENST00000219919 3034 ntAPPRIS P1 TSL 1 (best) BASIC6.66□□□□□ -1.34
LIG3P49916 PDZRN4-203ENST00000539469 3041 ntTSL 1 (best) BASIC6.66□□□□□ -1.34
LIG3P49916 AL133284.1-201ENST00000423715 4996 ntTSL 1 (best) BASIC6.66□□□□□ -1.34
LIG3P49916 AC011447.7-201ENST00000624228 1590 ntBASIC6.66□□□□□ -1.34
LIG3P49916 ZNF24-201ENST00000261332 6307 ntAPPRIS P1 TSL 1 (best) BASIC6.66□□□□□ -1.34
Retrieved 100 of 98,524 protein–RNA pairs in 115.8 ms