Protein–RNA interactions for Protein: P41225

SOX3, Transcription factor SOX-3, humanhuman

Predictions only

Length 446 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX3P41225 AL078599.1-201ENST00000402075 293 ntBASIC4.73□□□□□ -1.65
SOX3P41225 AL645733.1-201ENST00000402250 217 ntBASIC4.73□□□□□ -1.65
SOX3P41225 RN7SKP114-201ENST00000410327 279 ntBASIC4.73□□□□□ -1.65
SOX3P41225 IFNA17-201ENST00000413767 980 ntAPPRIS P1 BASIC4.73□□□□□ -1.65
SOX3P41225 GNG5P5-201ENST00000420444 220 ntBASIC4.73□□□□□ -1.65
SOX3P41225 DDX39BP1-205ENST00000422507 192 ntBASIC4.73□□□□□ -1.65
SOX3P41225 RBMY2QP-201ENST00000429799 1147 ntBASIC4.73□□□□□ -1.65
SOX3P41225 LINC01889-201ENST00000430692 668 ntTSL 5 BASIC4.73□□□□□ -1.65
SOX3P41225 AL353689.2-201ENST00000433837 440 ntTSL 3 BASIC4.73□□□□□ -1.65
SOX3P41225 LINC01878-201ENST00000434559 769 ntTSL 3 BASIC4.73□□□□□ -1.65
SOX3P41225 PSMD10P3-201ENST00000437000 448 ntBASIC4.73□□□□□ -1.65
SOX3P41225 IKZF3-212ENST00000439016 1246 ntTSL 5 BASIC4.73□□□□□ -1.65
SOX3P41225 FMR1-IT1-201ENST00000441414 343 ntTSL 5 BASIC4.73□□□□□ -1.65
SOX3P41225 AC104629.2-201ENST00000468627 598 ntBASIC4.73□□□□□ -1.65
SOX3P41225 AC090543.1-201ENST00000492168 485 ntBASIC4.73□□□□□ -1.65
SOX3P41225 PDCD10-216ENST00000492396 814 ntTSL 5 BASIC4.73□□□□□ -1.65
SOX3P41225 FO393419.2-201ENST00000492975 428 ntTSL 3 BASIC4.73□□□□□ -1.65
SOX3P41225 AC097173.1-201ENST00000505862 819 ntBASIC4.73□□□□□ -1.65
SOX3P41225 FABP5P6-201ENST00000510588 409 ntBASIC4.73□□□□□ -1.65
SOX3P41225 HMGB1P47-201ENST00000511281 589 ntBASIC4.73□□□□□ -1.65
SOX3P41225 LINC02429-202ENST00000513836 694 ntTSL 3 BASIC4.73□□□□□ -1.65
SOX3P41225 AP001961.1-201ENST00000515782 526 ntTSL 3 BASIC4.73□□□□□ -1.65
SOX3P41225 LINC00500-201ENST00000515860 539 ntTSL 4 BASIC4.73□□□□□ -1.65
SOX3P41225 ATXN3-215ENST00000532032 1191 ntTSL 1 (best) BASIC4.73□□□□□ -1.65
SOX3P41225 C8orf59-206ENST00000545322 491 ntTSL 3 BASIC4.73□□□□□ -1.65
SOX3P41225 BNIP3P1-201ENST00000547295 580 ntBASIC4.73□□□□□ -1.65
SOX3P41225 NOP10-202ENST00000557912 436 ntTSL 2 BASIC4.73□□□□□ -1.65
SOX3P41225 AC066613.1-202ENST00000560727 630 ntTSL 5 BASIC4.73□□□□□ -1.65
SOX3P41225 AC020659.1-204ENST00000562920 400 ntTSL 3 BASIC4.73□□□□□ -1.65
SOX3P41225 AC142086.4-201ENST00000568904 650 ntTSL 3 BASIC4.73□□□□□ -1.65
SOX3P41225 AC010618.3-202ENST00000598141 476 ntTSL 3 BASIC4.73□□□□□ -1.65
SOX3P41225 DEC1-204ENST00000614246 210 ntAPPRIS ALT2 TSL 1 (best) BASIC4.73□□□□□ -1.65
SOX3P41225 AC015914.2-201ENST00000618167 288 ntBASIC4.73□□□□□ -1.65
SOX3P41225 BX005214.3-202ENST00000619809 325 ntBASIC4.73□□□□□ -1.65
SOX3P41225 AC015722.2-201ENST00000622210 551 ntBASIC4.73□□□□□ -1.65
SOX3P41225 WISP3-211ENST00000639360 1026 ntTSL 5 BASIC4.73□□□□□ -1.65
SOX3P41225 ERC2-201ENST00000288221 6138 ntAPPRIS P1 TSL 1 (best) BASIC4.73□□□□□ -1.65
SOX3P41225 ZNF273-204ENST00000476120 2000 ntAPPRIS P1 TSL 3 BASIC4.73□□□□□ -1.65
SOX3P41225 BMPR2-201ENST00000374574 9683 ntTSL 2 BASIC4.73□□□□□ -1.65
SOX3P41225 AC115220.1-201ENST00000330020 1453 ntAPPRIS P1 TSL 3 BASIC4.73□□□□□ -1.65
SOX3P41225 NXF4-202ENST00000416098 1465 ntBASIC4.73□□□□□ -1.65
SOX3P41225 EPHA7-202ENST00000369303 6588 ntAPPRIS P1 TSL 1 (best) BASIC4.73□□□□□ -1.65
SOX3P41225 AC011447.7-201ENST00000624228 1590 ntBASIC4.73□□□□□ -1.65
SOX3P41225 WDR5B-201ENST00000330689 3720 ntAPPRIS P1 BASIC4.73□□□□□ -1.65
SOX3P41225 DST-202ENST00000312431 17756 ntAPPRIS P2 TSL 5 BASIC4.73□□□□□ -1.65
SOX3P41225 DNAH12-203ENST00000389536 2613 ntTSL 5 BASIC4.73□□□□□ -1.65
SOX3P41225 NCOA3-201ENST00000371997 6750 ntAPPRIS ALT2 TSL 1 (best) BASIC4.73□□□□□ -1.65
SOX3P41225 ATRX-202ENST00000395603 10218 ntAPPRIS ALT2 TSL 1 (best) BASIC4.72□□□□□ -1.65
SOX3P41225 FAM216B-201ENST00000313851 3243 ntAPPRIS P1 TSL 1 (best) BASIC4.72□□□□□ -1.65
SOX3P41225 SLC9C1-201ENST00000305815 4172 ntAPPRIS P3 TSL 2 BASIC4.72□□□□□ -1.65
SOX3P41225 ZNF285-204ENST00000591679 2388 ntAPPRIS ALT2 TSL 4 BASIC4.72□□□□□ -1.65
SOX3P41225 DLC1-209ENST00000511869 2451 ntTSL 1 (best) BASIC4.72□□□□□ -1.65
SOX3P41225 DNAH8-201ENST00000327475 14360 ntAPPRIS P2 TSL 5 BASIC4.72□□□□□ -1.65
SOX3P41225 ABCA6-206ENST00000590645 1511 ntTSL 1 (best) BASIC4.72□□□□□ -1.65
SOX3P41225 CSNK1G3-210ENST00000521364 2580 ntAPPRIS ALT2 TSL 2 BASIC4.72□□□□□ -1.65
SOX3P41225 TCHHL1-201ENST00000368806 3603 ntAPPRIS P1 TSL 1 (best) BASIC4.72□□□□□ -1.65
SOX3P41225 AADAT-202ENST00000353187 2101 ntAPPRIS P3 TSL 2 BASIC4.72□□□□□ -1.65
SOX3P41225 SRRM1-203ENST00000447431 3691 ntAPPRIS ALT2 TSL 5 BASIC4.72□□□□□ -1.65
SOX3P41225 GAS2L3-203ENST00000539410 2229 ntAPPRIS P1 TSL 2 BASIC4.72□□□□□ -1.65
SOX3P41225 AC093849.1-201ENST00000563631 2209 ntBASIC4.72□□□□□ -1.65
SOX3P41225 LINC02302-201ENST00000556405 2904 ntTSL 2 BASIC4.72□□□□□ -1.65
SOX3P41225 GYS2-201ENST00000261195 3132 ntAPPRIS P1 TSL 1 (best) BASIC4.72□□□□□ -1.65
SOX3P41225 OR8I2-201ENST00000302124 1010 ntAPPRIS P1 BASIC4.72□□□□□ -1.65
SOX3P41225 SPRR2E-202ENST00000368751 692 ntAPPRIS P1 TSL 1 (best) BASIC4.72□□□□□ -1.65
SOX3P41225 OR13C3-201ENST00000374781 1108 ntBASIC4.72□□□□□ -1.65
SOX3P41225 AL158840.1-202ENST00000425754 694 ntTSL 3 BASIC4.72□□□□□ -1.65
SOX3P41225 STXBP5-AS1-204ENST00000431143 644 ntTSL 3 BASIC4.72□□□□□ -1.65
SOX3P41225 KCNIP1-205ENST00000434108 726 ntTSL 1 (best) BASIC4.72□□□□□ -1.65
SOX3P41225 AC099063.1-201ENST00000437128 324 ntTSL 5 BASIC4.72□□□□□ -1.65
SOX3P41225 RPL12P3-201ENST00000440080 396 ntBASIC4.72□□□□□ -1.65
SOX3P41225 AC096644.1-201ENST00000446169 390 ntTSL 3 BASIC4.72□□□□□ -1.65
SOX3P41225 AL356421.2-201ENST00000446733 197 ntTSL 3 BASIC4.72□□□□□ -1.65
SOX3P41225 AL157884.3-201ENST00000448273 1184 ntBASIC4.72□□□□□ -1.65
SOX3P41225 AC092958.2-201ENST00000476987 492 ntTSL 3 BASIC4.72□□□□□ -1.65
SOX3P41225 RN7SL97P-201ENST00000486780 299 ntBASIC4.72□□□□□ -1.65
SOX3P41225 HMGN2P25-201ENST00000486956 268 ntBASIC4.72□□□□□ -1.65
SOX3P41225 HMGB3P16-201ENST00000508037 287 ntBASIC4.72□□□□□ -1.65
SOX3P41225 AC106864.1-201ENST00000510655 640 ntTSL 3 BASIC4.72□□□□□ -1.65
SOX3P41225 OR4R2P-201ENST00000530815 597 ntBASIC4.72□□□□□ -1.65
SOX3P41225 AC090023.2-201ENST00000540875 545 ntTSL 3 BASIC4.72□□□□□ -1.65
SOX3P41225 GPATCH2L-203ENST00000553588 776 ntTSL 2 BASIC4.72□□□□□ -1.65
SOX3P41225 MIR4646-201ENST00000580775 63 ntBASIC4.72□□□□□ -1.65
SOX3P41225 RN7SL435P-201ENST00000584418 282 ntBASIC4.72□□□□□ -1.65
SOX3P41225 AC011824.3-201ENST00000585093 563 ntTSL 4 BASIC4.72□□□□□ -1.65
SOX3P41225 ZNF66-203ENST00000594534 757 ntTSL 5 BASIC4.72□□□□□ -1.65
SOX3P41225 GMFG-202ENST00000594700 397 ntTSL 2 BASIC4.72□□□□□ -1.65
SOX3P41225 AL671309.1-201ENST00000603750 544 ntBASIC4.72□□□□□ -1.65
SOX3P41225 AC133644.2-201ENST00000608142 540 ntBASIC4.72□□□□□ -1.65
SOX3P41225 EIF3FP1-201ENST00000613970 806 ntBASIC4.72□□□□□ -1.65
SOX3P41225 RMST_5.1-201ENST00000618704 126 ntBASIC4.72□□□□□ -1.65
SOX3P41225 HMGN2-210ENST00000619352 1148 ntAPPRIS P1 TSL 1 (best) BASIC4.72□□□□□ -1.65
SOX3P41225 AL138960.2-201ENST00000625145 535 ntBASIC4.72□□□□□ -1.65
SOX3P41225 LINC02109-206ENST00000629527 854 ntTSL 5 BASIC4.72□□□□□ -1.65
SOX3P41225 OR13C3-202ENST00000641090 1108 ntAPPRIS P1 BASIC4.72□□□□□ -1.65
SOX3P41225 PSD3-201ENST00000286485 6665 ntAPPRIS P3 TSL 1 (best) BASIC4.72□□□□□ -1.65
SOX3P41225 IRAK4-203ENST00000448290 1381 ntTSL 5 BASIC4.72□□□□□ -1.65
SOX3P41225 SLFN12L-205ENST00000628453 1767 ntAPPRIS ALT2 TSL 5 BASIC4.72□□□□□ -1.65
SOX3P41225 PROS2P-201ENST00000474651 1951 ntBASIC4.72□□□□□ -1.65
SOX3P41225 CYP7A1-201ENST00000301645 2950 ntAPPRIS P1 TSL 1 (best) BASIC4.72□□□□□ -1.65
SOX3P41225 ZNF12-203ENST00000404360 4474 ntTSL 1 (best) BASIC4.72□□□□□ -1.65
Retrieved 100 of 98,524 protein–RNA pairs in 71.5 ms