Protein–RNA interactions for Protein: P09017

HOXC4, Homeobox protein Hox-C4, humanhuman

Predicted RBP Predictions only

Length 264 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC4P09017 AL139022.1-201ENST00000556127 486 ntTSL 5 BASIC4.75□□□□□ -1.65
HOXC4P09017 AC010547.7-201ENST00000570323 333 ntBASIC4.75□□□□□ -1.65
HOXC4P09017 C1QBP-206ENST00000574444 901 ntTSL 3 BASIC4.75□□□□□ -1.65
HOXC4P09017 MIR4330-201ENST00000579077 105 ntBASIC4.75□□□□□ -1.65
HOXC4P09017 AC098935.2-201ENST00000604222 466 ntBASIC4.75□□□□□ -1.65
HOXC4P09017 MIR6853-201ENST00000619642 74 ntBASIC4.75□□□□□ -1.65
HOXC4P09017 AC010435.1-201ENST00000623353 1177 ntBASIC4.75□□□□□ -1.65
HOXC4P09017 AP003072.5-201ENST00000623872 773 ntBASIC4.75□□□□□ -1.65
HOXC4P09017 FRG1EP-201ENST00000634469 770 ntBASIC4.75□□□□□ -1.65
HOXC4P09017 OR8J3-204ENST00000642058 3806 ntAPPRIS P1 BASIC4.75□□□□□ -1.65
HOXC4P09017 GRIA2-202ENST00000296526 5621 ntAPPRIS P3 TSL 1 (best) BASIC4.75□□□□□ -1.65
HOXC4P09017 MUC2-202ENST00000613187 4845 ntBASIC4.75□□□□□ -1.65
HOXC4P09017 KCNJ16-204ENST00000585558 4014 ntTSL 1 (best) BASIC4.75□□□□□ -1.65
HOXC4P09017 SLC38A9-218ENST00000512595 1756 ntTSL 2 BASIC4.75□□□□□ -1.65
HOXC4P09017 TLK1P1-201ENST00000456760 2440 ntBASIC4.75□□□□□ -1.65
HOXC4P09017 DSE-204ENST00000452085 10586 ntAPPRIS P1 TSL 1 (best) BASIC4.75□□□□□ -1.65
HOXC4P09017 SEC31A-201ENST00000264405 3447 ntTSL 2 BASIC4.75□□□□□ -1.65
HOXC4P09017 LINGO2-201ENST00000308675 3031 ntAPPRIS P1 TSL 5 BASIC4.75□□□□□ -1.65
HOXC4P09017 CYP19A1-201ENST00000396402 4417 ntAPPRIS P1 TSL 1 (best) BASIC4.75□□□□□ -1.65
HOXC4P09017 GPR18-202ENST00000397470 1468 ntAPPRIS P1 TSL 1 (best) BASIC4.75□□□□□ -1.65
HOXC4P09017 DICER1-212ENST00000541352 5621 ntTSL 1 (best) BASIC4.74□□□□□ -1.65
HOXC4P09017 PIGN-245ENST00000640252 7924 ntAPPRIS P1 TSL 1 (best) BASIC4.74□□□□□ -1.65
HOXC4P09017 PRG4-206ENST00000635041 4915 ntAPPRIS ALT2 TSL 5 BASIC4.74□□□□□ -1.65
HOXC4P09017 LINC01923-203ENST00000456248 2528 ntTSL 2 BASIC4.74□□□□□ -1.65
HOXC4P09017 C5-201ENST00000223642 5465 ntAPPRIS P1 TSL 1 (best) BASIC4.74□□□□□ -1.65
HOXC4P09017 AL450345.1-202ENST00000605741 3881 ntBASIC4.74□□□□□ -1.65
HOXC4P09017 HIST1H2BD-201ENST00000289316 789 ntAPPRIS P1 TSL 1 (best) BASIC4.74□□□□□ -1.65
HOXC4P09017 AC017079.1-201ENST00000333650 415 ntBASIC4.74□□□□□ -1.65
HOXC4P09017 OR6C1-201ENST00000379668 1064 ntAPPRIS P1 BASIC4.74□□□□□ -1.65
HOXC4P09017 RPL26P29-201ENST00000415623 438 ntBASIC4.74□□□□□ -1.65
HOXC4P09017 ICA1L-206ENST00000418208 602 ntTSL 4 BASIC4.74□□□□□ -1.65
HOXC4P09017 OR2B7P-201ENST00000429302 934 ntBASIC4.74□□□□□ -1.65
HOXC4P09017 FMR1-IT1-201ENST00000441414 343 ntTSL 5 BASIC4.74□□□□□ -1.65
HOXC4P09017 TBX18-AS1-202ENST00000441863 382 ntTSL 2 BASIC4.74□□□□□ -1.65
HOXC4P09017 AC005518.1-201ENST00000448131 1116 ntTSL 2 BASIC4.74□□□□□ -1.65
HOXC4P09017 KIAA0895-209ENST00000453212 956 ntTSL 3 BASIC4.74□□□□□ -1.65
HOXC4P09017 RPS29P33-201ENST00000456717 146 ntBASIC4.74□□□□□ -1.65
HOXC4P09017 APOA2-207ENST00000470459 416 ntTSL 5 BASIC4.74□□□□□ -1.65
HOXC4P09017 AC139718.2-201ENST00000506068 481 ntTSL 3 BASIC4.74□□□□□ -1.65
HOXC4P09017 KCTD9P6-201ENST00000522306 950 ntBASIC4.74□□□□□ -1.65
HOXC4P09017 AC008250.1-201ENST00000539874 522 ntTSL 3 BASIC4.74□□□□□ -1.65
HOXC4P09017 LINC02443-204ENST00000544717 754 ntTSL 5 BASIC4.74□□□□□ -1.65
HOXC4P09017 AC005154.1-213ENST00000578572 445 ntTSL 3 BASIC4.74□□□□□ -1.65
HOXC4P09017 AC002091.1-201ENST00000578788 557 ntTSL 2 BASIC4.74□□□□□ -1.65
HOXC4P09017 LINC00511-212ENST00000581183 657 ntTSL 3 BASIC4.74□□□□□ -1.65
HOXC4P09017 AC005244.2-201ENST00000585228 718 ntTSL 3 BASIC4.74□□□□□ -1.65
HOXC4P09017 AP001542.1-201ENST00000591314 200 ntBASIC4.74□□□□□ -1.65
HOXC4P09017 SSX9-202ENST00000608568 580 ntTSL 4 BASIC4.74□□□□□ -1.65
HOXC4P09017 MIR6748-201ENST00000610433 71 ntBASIC4.74□□□□□ -1.65
HOXC4P09017 LEUTX-202ENST00000638280 667 ntAPPRIS P1 TSL 3 BASIC4.74□□□□□ -1.65
HOXC4P09017 ATRX-201ENST00000373344 11220 ntAPPRIS P4 TSL 1 (best) BASIC4.74□□□□□ -1.65
HOXC4P09017 CTSS-201ENST00000368985 4107 ntAPPRIS P1 TSL 1 (best) BASIC4.74□□□□□ -1.65
HOXC4P09017 TJP1-209ENST00000545208 5007 ntAPPRIS ALT2 TSL 5 BASIC4.74□□□□□ -1.65
HOXC4P09017 KSR2-202ENST00000425217 17008 ntTSL 5 BASIC4.74□□□□□ -1.65
HOXC4P09017 MTRR-202ENST00000440940 3215 ntAPPRIS P1 TSL 1 (best) BASIC4.74□□□□□ -1.65
HOXC4P09017 ZNF525-202ENST00000474037 3890 ntAPPRIS P1 TSL 5 BASIC4.73□□□□□ -1.65
HOXC4P09017 KLHL13-201ENST00000262820 3972 ntAPPRIS P3 TSL 1 (best) BASIC4.73□□□□□ -1.65
HOXC4P09017 MIA3-203ENST00000344922 8142 ntAPPRIS P2 TSL 5 BASIC4.73□□□□□ -1.65
HOXC4P09017 AC004817.4-201ENST00000602396 3625 ntBASIC4.73□□□□□ -1.65
HOXC4P09017 KAT6B-201ENST00000287239 8287 ntAPPRIS P3 TSL 1 (best) BASIC4.73□□□□□ -1.65
HOXC4P09017 RPS3AP23-201ENST00000401762 784 ntBASIC4.73□□□□□ -1.65
HOXC4P09017 AC119751.6-201ENST00000416712 186 ntBASIC4.73□□□□□ -1.65
HOXC4P09017 AL355994.1-201ENST00000424379 260 ntBASIC4.73□□□□□ -1.65
HOXC4P09017 AL449043.1-202ENST00000427318 582 ntTSL 1 (best) BASIC4.73□□□□□ -1.65
HOXC4P09017 AC092811.1-201ENST00000428642 397 ntTSL 3 BASIC4.73□□□□□ -1.65
HOXC4P09017 FO393401.1-201ENST00000453914 600 ntTSL 3 BASIC4.73□□□□□ -1.65
HOXC4P09017 AL356981.1-201ENST00000454879 684 ntBASIC4.73□□□□□ -1.65
HOXC4P09017 AC092925.1-201ENST00000470739 493 ntTSL 3 BASIC4.73□□□□□ -1.65
HOXC4P09017 AL136537.1-202ENST00000501725 430 ntTSL 3 BASIC4.73□□□□□ -1.65
HOXC4P09017 EGFLAM-AS3-201ENST00000505267 549 ntTSL 5 BASIC4.73□□□□□ -1.65
HOXC4P09017 AC005823.2-201ENST00000505978 650 ntTSL 3 BASIC4.73□□□□□ -1.65
HOXC4P09017 AC091180.4-201ENST00000511322 245 ntTSL 2 BASIC4.73□□□□□ -1.65
HOXC4P09017 AC010245.1-201ENST00000511329 754 ntTSL 3 BASIC4.73□□□□□ -1.65
HOXC4P09017 LINC00535-203ENST00000520096 790 ntTSL 3 BASIC4.73□□□□□ -1.65
HOXC4P09017 AC044810.3-201ENST00000527565 589 ntTSL 3 BASIC4.73□□□□□ -1.65
HOXC4P09017 AL110118.1-201ENST00000553543 400 ntBASIC4.73□□□□□ -1.65
HOXC4P09017 AL049830.4-201ENST00000555149 351 ntBASIC4.73□□□□□ -1.65
HOXC4P09017 AC091073.1-201ENST00000559620 666 ntTSL 3 BASIC4.73□□□□□ -1.65
HOXC4P09017 AC015660.2-201ENST00000561362 323 ntTSL 3 BASIC4.73□□□□□ -1.65
HOXC4P09017 ZNF230-204ENST00000585632 579 ntTSL 2 BASIC4.73□□□□□ -1.65
HOXC4P09017 uc_338.18-201ENST00000615451 175 ntBASIC4.73□□□□□ -1.65
HOXC4P09017 LDHA-225ENST00000625635 141 ntTSL 5 BASIC4.73□□□□□ -1.65
HOXC4P09017 GOLT1B-210ENST00000631252 223 ntTSL 3 BASIC4.73□□□□□ -1.65
HOXC4P09017 LRP1B-201ENST00000389484 16535 ntAPPRIS P1 TSL 1 (best) BASIC4.73□□□□□ -1.65
HOXC4P09017 RNF217-201ENST00000359704 1784 ntTSL 1 (best) BASIC4.73□□□□□ -1.65
HOXC4P09017 PTPRZ1-201ENST00000393386 8175 ntAPPRIS P3 TSL 1 (best) BASIC4.73□□□□□ -1.65
HOXC4P09017 ECT2L-201ENST00000367682 4343 ntAPPRIS P1 TSL 5 BASIC4.73□□□□□ -1.65
HOXC4P09017 DCLK1-204ENST00000379893 4612 ntTSL 2 BASIC4.73□□□□□ -1.65
HOXC4P09017 AC009643.2-201ENST00000603543 1448 ntBASIC4.72□□□□□ -1.65
HOXC4P09017 ING3-205ENST00000445699 1723 ntTSL 1 (best) BASIC4.72□□□□□ -1.65
HOXC4P09017 IQCM-206ENST00000636793 1900 ntAPPRIS P5 TSL 5 BASIC4.72□□□□□ -1.65
HOXC4P09017 RBMS1-202ENST00000392753 3781 ntTSL 5 BASIC4.72□□□□□ -1.65
HOXC4P09017 PIK3C3-217ENST00000639914 2722 ntTSL 5 BASIC4.72□□□□□ -1.65
HOXC4P09017 CSMD3-204ENST00000455883 12485 ntTSL 1 (best) BASIC4.72□□□□□ -1.65
HOXC4P09017 GLYAT-201ENST00000278400 1150 ntTSL 1 (best) BASIC4.72□□□□□ -1.65
HOXC4P09017 OR4K15-201ENST00000305051 1216 ntBASIC4.72□□□□□ -1.65
HOXC4P09017 S100A9-201ENST00000368738 577 ntAPPRIS P1 TSL 1 (best) BASIC4.72□□□□□ -1.65
HOXC4P09017 XAGE1A-202ENST00000375600 474 ntTSL 1 (best) BASIC4.72□□□□□ -1.65
HOXC4P09017 XAGE1B-202ENST00000375613 474 ntTSL 1 (best) BASIC4.72□□□□□ -1.65
HOXC4P09017 RNU6-398P-201ENST00000384143 109 ntBASIC4.72□□□□□ -1.65
Retrieved 100 of 98,524 protein–RNA pairs in 72.7 ms