Protein–RNA interactions for Protein: Q99715

COL12A1, Collagen alpha-1(XII) chain, humanhuman

Predictions only

Length 3,063 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL12A1Q99715 LY6E-209ENST00000521003 740 ntAPPRIS P2 TSL 2 BASIC17.11■□□□□ 0.33
COL12A1Q99715 LINC00599-204ENST00000521242 716 ntTSL 3 BASIC17.11■□□□□ 0.33
COL12A1Q99715 KRT18P58-201ENST00000527480 1120 ntBASIC17.11■□□□□ 0.33
COL12A1Q99715 NT5C-210ENST00000582160 860 ntTSL 2 BASIC17.11■□□□□ 0.33
COL12A1Q99715 HAS1-201ENST00000222115 2087 ntAPPRIS P3 TSL 1 (best) BASIC17.11■□□□□ 0.33
COL12A1Q99715 ATP5A1-220ENST00000593152 2258 ntTSL 2 BASIC17.11■□□□□ 0.33
COL12A1Q99715 DUSP15-209ENST00000486996 1651 ntTSL 2 BASIC17.11■□□□□ 0.33
COL12A1Q99715 CIZ1-206ENST00000372954 2731 ntAPPRIS ALT2 TSL 1 (best) BASIC17.11■□□□□ 0.33
COL12A1Q99715 NOX4-207ENST00000525196 1555 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
COL12A1Q99715 RAMP1-201ENST00000254661 910 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
COL12A1Q99715 FGF8-203ENST00000346714 694 ntAPPRIS ALT2 TSL 1 (best) BASIC17.11■□□□□ 0.33
COL12A1Q99715 AC116353.4-201ENST00000507279 576 ntTSL 4 BASIC17.11■□□□□ 0.33
COL12A1Q99715 DIO1-206ENST00000525202 558 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
COL12A1Q99715 AC012615.1-201ENST00000565797 1299 ntBASIC17.11■□□□□ 0.33
COL12A1Q99715 CNTNAP3B-212ENST00000617422 2170 ntTSL 2 BASIC17.11■□□□□ 0.33
COL12A1Q99715 HCK-203ENST00000375862 1806 ntAPPRIS ALT2 TSL 1 (best) BASIC17.11■□□□□ 0.33
COL12A1Q99715 HOXD11-201ENST00000249504 1533 ntAPPRIS P1 TSL 3 BASIC17.1■□□□□ 0.33
COL12A1Q99715 TEAD2-208ENST00000598810 2191 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
COL12A1Q99715 COPE-201ENST00000262812 1141 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
COL12A1Q99715 HIST1H2AI-201ENST00000358739 503 ntAPPRIS P1 BASIC17.1■□□□□ 0.33
COL12A1Q99715 SYCE1L-201ENST00000378644 858 ntAPPRIS P2 TSL 5 BASIC17.1■□□□□ 0.33
COL12A1Q99715 BIRC7-203ENST00000395306 593 ntTSL 2 BASIC17.1■□□□□ 0.33
COL12A1Q99715 C7orf34-201ENST00000409607 766 ntAPPRIS P2 TSL 1 (best) BASIC17.1■□□□□ 0.33
COL12A1Q99715 AC011498.5-201ENST00000592027 486 ntBASIC17.1■□□□□ 0.33
COL12A1Q99715 C14orf79-207ENST00000550614 1912 ntAPPRIS ALT2 TSL 1 (best) BASIC17.1■□□□□ 0.33
COL12A1Q99715 IRX3-201ENST00000329734 2601 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
COL12A1Q99715 NAPA-210ENST00000595227 1460 ntTSL 3 BASIC17.1■□□□□ 0.33
COL12A1Q99715 TSPY2-201ENST00000320701 1161 ntAPPRIS P5 TSL 1 (best) BASIC17.1■□□□□ 0.33
COL12A1Q99715 MIR564-202ENST00000385049 94 ntBASIC17.1■□□□□ 0.33
COL12A1Q99715 C21orf91-202ENST00000400558 1090 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
COL12A1Q99715 PCAT6-201ENST00000417262 748 ntTSL 2 BASIC17.1■□□□□ 0.33
COL12A1Q99715 TSPY2-203ENST00000429039 779 ntAPPRIS ALT2 TSL 2 BASIC17.1■□□□□ 0.33
COL12A1Q99715 CHADL-201ENST00000216241 2533 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
COL12A1Q99715 GOLGA6L3-201ENST00000507199 1679 ntBASIC17.1■□□□□ 0.33
COL12A1Q99715 PLPP5-203ENST00000424479 2130 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
COL12A1Q99715 PGRMC2-201ENST00000296425 2767 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
COL12A1Q99715 RABGGTA-202ENST00000399409 2265 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
COL12A1Q99715 KLHL7-201ENST00000322275 969 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
COL12A1Q99715 CHMP3-203ENST00000409225 1099 ntTSL 2 BASIC17.1■□□□□ 0.33
COL12A1Q99715 TSPY19P-201ENST00000418461 509 ntBASIC17.1■□□□□ 0.33
COL12A1Q99715 AP001062.3-201ENST00000422357 704 ntTSL 2 BASIC17.1■□□□□ 0.33
COL12A1Q99715 TSPY18P-201ENST00000441642 509 ntBASIC17.1■□□□□ 0.33
COL12A1Q99715 DMKN-212ENST00000443640 842 ntAPPRIS ALT2 TSL 5 BASIC17.1■□□□□ 0.33
COL12A1Q99715 AC091304.2-201ENST00000564639 760 ntBASIC17.1■□□□□ 0.33
COL12A1Q99715 AC011298.2-201ENST00000617989 482 ntBASIC17.1■□□□□ 0.33
COL12A1Q99715 SCAMP4-213ENST00000621748 1172 ntAPPRIS P1 TSL 5 BASIC17.1■□□□□ 0.33
COL12A1Q99715 ZDHHC14-204ENST00000414563 3134 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
COL12A1Q99715 AUP1-201ENST00000377526 1695 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
COL12A1Q99715 PHACTR3-202ENST00000359926 2252 ntTSL 2 BASIC17.09■□□□□ 0.33
COL12A1Q99715 CDIPT-201ENST00000219789 2353 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
COL12A1Q99715 SETD3-201ENST00000329331 1330 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
COL12A1Q99715 FGF17-201ENST00000359441 1714 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
COL12A1Q99715 SAAL1-202ENST00000524803 1582 ntAPPRIS P2 TSL 1 (best) BASIC17.09■□□□□ 0.33
COL12A1Q99715 ZFAND2A-201ENST00000316495 860 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
COL12A1Q99715 ZFAND2A-203ENST00000401903 968 ntTSL 3 BASIC17.09■□□□□ 0.33
COL12A1Q99715 AKR7L-201ENST00000420396 1240 ntAPPRIS ALT2 TSL 5 BASIC17.09■□□□□ 0.33
COL12A1Q99715 MOBP-208ENST00000441980 830 ntAPPRIS P4 TSL 4 BASIC17.09■□□□□ 0.33
COL12A1Q99715 CCDC124-201ENST00000445755 938 ntAPPRIS P1 TSL 2 BASIC17.09■□□□□ 0.33
COL12A1Q99715 AL451069.1-201ENST00000455414 634 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
COL12A1Q99715 AC034213.1-201ENST00000507681 806 ntTSL 3 BASIC17.09■□□□□ 0.33
COL12A1Q99715 LINC01024-205ENST00000521563 939 ntTSL 3 BASIC17.09■□□□□ 0.33
COL12A1Q99715 IFI27L1-206ENST00000554562 571 ntTSL 3 BASIC17.09■□□□□ 0.33
COL12A1Q99715 SAXO2-206ENST00000566205 340 ntAPPRIS ALT2 TSL 2 BASIC17.09■□□□□ 0.33
COL12A1Q99715 AC006504.5-207ENST00000586220 487 ntTSL 2 BASIC17.09■□□□□ 0.33
COL12A1Q99715 IGFLR1-209ENST00000592537 1195 ntAPPRIS P2 TSL 1 (best) BASIC17.09■□□□□ 0.33
COL12A1Q99715 CCDC124-203ENST00000597436 1055 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
COL12A1Q99715 ACSF2-203ENST00000502667 2098 ntTSL 2 BASIC17.09■□□□□ 0.33
COL12A1Q99715 GATA6-AS1-202ENST00000583490 1788 ntTSL 2 BASIC17.09■□□□□ 0.33
COL12A1Q99715 CIRBP-201ENST00000320936 1328 ntAPPRIS P3 TSL 1 (best) BASIC17.09■□□□□ 0.33
COL12A1Q99715 CIRBP-207ENST00000586472 1303 ntAPPRIS P3 TSL 3 BASIC17.09■□□□□ 0.33
COL12A1Q99715 SYNGR2-201ENST00000225777 2325 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
COL12A1Q99715 LBX1-AS1-203ENST00000454527 740 ntTSL 5 BASIC17.09■□□□□ 0.33
COL12A1Q99715 AP002414.4-201ENST00000589764 1148 ntBASIC17.09■□□□□ 0.33
COL12A1Q99715 OAZ1-211ENST00000602676 1148 ntAPPRIS P3 TSL 5 BASIC17.09■□□□□ 0.33
COL12A1Q99715 IFNL4-202ENST00000616270 1132 ntAPPRIS ALT2 TSL 1 (best) BASIC17.09■□□□□ 0.33
COL12A1Q99715 CYP2A6-201ENST00000301141 1764 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
COL12A1Q99715 ASPG-201ENST00000546892 1791 ntAPPRIS ALT2 TSL 1 (best) BASIC17.09■□□□□ 0.33
COL12A1Q99715 TLX2-201ENST00000233638 2136 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
COL12A1Q99715 ISM2-207ENST00000493585 1739 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
COL12A1Q99715 CPNE9-203ENST00000383832 2068 ntAPPRIS P1 TSL 5 BASIC17.09■□□□□ 0.33
COL12A1Q99715 ASCL5-202ENST00000458416 1420 ntAPPRIS P1 BASIC17.08■□□□□ 0.33
COL12A1Q99715 BCKDK-201ENST00000219794 2128 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
COL12A1Q99715 ART5-203ENST00000397068 1504 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
COL12A1Q99715 PMS2P2-201ENST00000425039 1128 ntBASIC17.08■□□□□ 0.33
COL12A1Q99715 PITPNA-AS1-201ENST00000425081 542 ntTSL 2 BASIC17.08■□□□□ 0.33
COL12A1Q99715 ILKAP-212ENST00000622223 1088 ntTSL 1 (best) BASIC17.08■□□□□ 0.33
COL12A1Q99715 AGMAT-201ENST00000375826 2500 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
COL12A1Q99715 GTPBP8-203ENST00000383678 1360 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
COL12A1Q99715 AC242852.2-201ENST00000615738 1807 ntBASIC17.08■□□□□ 0.33
COL12A1Q99715 NPIPA8-201ENST00000525596 1565 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
COL12A1Q99715 TRPM4-213ENST00000599628 1829 ntTSL 2 BASIC17.08■□□□□ 0.32
COL12A1Q99715 ARL2BP-201ENST00000219204 2130 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
COL12A1Q99715 ALKBH6-201ENST00000252984 955 ntAPPRIS ALT2 TSL 1 (best) BASIC17.08■□□□□ 0.32
COL12A1Q99715 KCNK7-202ENST00000342202 1283 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
COL12A1Q99715 LINC01770-202ENST00000430109 510 ntTSL 3 BASIC17.08■□□□□ 0.32
COL12A1Q99715 PRSS21-202ENST00000450020 1106 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
COL12A1Q99715 AC002116.1-201ENST00000473572 1130 ntTSL 2 BASIC17.08■□□□□ 0.32
COL12A1Q99715 AC019068.1-202ENST00000483218 768 ntTSL 3 BASIC17.08■□□□□ 0.32
COL12A1Q99715 AP002770.1-201ENST00000540547 428 ntTSL 4 BASIC17.08■□□□□ 0.32
COL12A1Q99715 MRPL46-202ENST00000558531 1002 ntTSL 2 BASIC17.08■□□□□ 0.32
Retrieved 100 of 98,524 protein–RNA pairs in 30.2 ms