Protein–RNA interactions for Protein: Q5THJ4

VPS13D, Vacuolar protein sorting-associated protein 13D, humanhuman

Predictions only

Length 4,388 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13DQ5THJ4 DIO1-206ENST00000525202 558 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
VPS13DQ5THJ4 PRELID3A-203ENST00000587735 1694 ntTSL 1 (best) BASIC13.17□□□□□ -0.3
VPS13DQ5THJ4 GPRC5C-205ENST00000481232 1592 ntTSL 1 (best) BASIC13.17□□□□□ -0.3
VPS13DQ5THJ4 AZU1-201ENST00000233997 908 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
VPS13DQ5THJ4 TLCD1-202ENST00000394933 784 ntTSL 2 BASIC13.17□□□□□ -0.3
VPS13DQ5THJ4 AC128688.1-201ENST00000487626 519 ntBASIC13.17□□□□□ -0.3
VPS13DQ5THJ4 LCN10-205ENST00000497771 723 ntAPPRIS P2 TSL 1 (best) BASIC13.17□□□□□ -0.3
VPS13DQ5THJ4 TRAF3IP2-AS1-208ENST00000525151 609 ntTSL 1 (best) BASIC13.17□□□□□ -0.3
VPS13DQ5THJ4 AP003041.3-201ENST00000527151 707 ntBASIC13.17□□□□□ -0.3
VPS13DQ5THJ4 AC215522.2-202ENST00000633163 1143 ntTSL 5 BASIC13.17□□□□□ -0.3
VPS13DQ5THJ4 TBC1D10C-201ENST00000312390 1497 ntTSL 5 BASIC13.17□□□□□ -0.3
VPS13DQ5THJ4 LPCAT4-201ENST00000314891 2262 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
VPS13DQ5THJ4 UGP2-201ENST00000337130 2338 ntAPPRIS P2 TSL 1 (best) BASIC13.17□□□□□ -0.3
VPS13DQ5THJ4 PRKACA-201ENST00000308677 2677 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
VPS13DQ5THJ4 MCTP2-205ENST00000543482 1422 ntTSL 2 BASIC13.17□□□□□ -0.3
VPS13DQ5THJ4 LCE4A-202ENST00000368777 672 ntAPPRIS P1 TSL 2 BASIC13.17□□□□□ -0.3
VPS13DQ5THJ4 PVRIG2P-201ENST00000435460 978 ntBASIC13.17□□□□□ -0.3
VPS13DQ5THJ4 AC004540.1-201ENST00000439120 891 ntTSL 2 BASIC13.17□□□□□ -0.3
VPS13DQ5THJ4 NEK7-207ENST00000538004 1036 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
VPS13DQ5THJ4 TPGS2-221ENST00000614939 1268 ntTSL 4 BASIC13.17□□□□□ -0.3
VPS13DQ5THJ4 OBP2B-205ENST00000618116 961 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
VPS13DQ5THJ4 ACBD4-203ENST00000398322 1986 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
VPS13DQ5THJ4 BRSK2-215ENST00000544817 1842 ntTSL 1 (best) BASIC13.17□□□□□ -0.3
VPS13DQ5THJ4 GAL3ST1-206ENST00000406955 1635 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
VPS13DQ5THJ4 C6orf136-203ENST00000376473 1402 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
VPS13DQ5THJ4 PFKFB3-202ENST00000360521 1964 ntAPPRIS P2 TSL 5 BASIC13.17□□□□□ -0.3
VPS13DQ5THJ4 SLC35E4-202ENST00000406566 2081 ntTSL 1 (best) BASIC13.17□□□□□ -0.3
VPS13DQ5THJ4 ACSF3-202ENST00000378345 1541 ntTSL 1 (best) BASIC13.17□□□□□ -0.3
VPS13DQ5THJ4 FAM72A-202ENST00000367128 2398 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
VPS13DQ5THJ4 FAM72D-201ENST00000400889 2397 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
VPS13DQ5THJ4 MADCAM1-203ENST00000382683 603 ntTSL 1 (best) BASIC13.17□□□□□ -0.3
VPS13DQ5THJ4 RGMA-208ENST00000556658 1889 ntTSL 1 (best) BASIC13.17□□□□□ -0.3
VPS13DQ5THJ4 AKR7A3-201ENST00000361640 1710 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
VPS13DQ5THJ4 RAB29-205ENST00000446390 1441 ntTSL 2 BASIC13.17□□□□□ -0.3
VPS13DQ5THJ4 SLC29A1-207ENST00000393841 2485 ntAPPRIS P1 TSL 2 BASIC13.16□□□□□ -0.3
VPS13DQ5THJ4 AP001271.2-201ENST00000624018 1556 ntBASIC13.16□□□□□ -0.3
VPS13DQ5THJ4 CFL1-201ENST00000308162 1234 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
VPS13DQ5THJ4 Metazoa_SRP.28-201ENST00000366402 260 ntBASIC13.16□□□□□ -0.3
VPS13DQ5THJ4 PSEN1-203ENST00000394157 1249 ntTSL 2 BASIC13.16□□□□□ -0.3
VPS13DQ5THJ4 C21orf91-202ENST00000400558 1090 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
VPS13DQ5THJ4 UBE2J2-205ENST00000400930 1021 ntTSL 5 BASIC13.16□□□□□ -0.3
VPS13DQ5THJ4 PRSS44-201ENST00000515154 1146 ntBASIC13.16□□□□□ -0.3
VPS13DQ5THJ4 GFOD2-207ENST00000602855 819 ntTSL 3 BASIC13.16□□□□□ -0.3
VPS13DQ5THJ4 KIRREL2-202ENST00000347900 2015 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
VPS13DQ5THJ4 KRT87P-201ENST00000529785 1700 ntTSL 2 BASIC13.16□□□□□ -0.3
VPS13DQ5THJ4 POLD2-202ENST00000406581 2158 ntAPPRIS P1 TSL 2 BASIC13.16□□□□□ -0.3
VPS13DQ5THJ4 NSDHL-201ENST00000370274 1929 ntAPPRIS P2 TSL 1 (best) BASIC13.16□□□□□ -0.3
VPS13DQ5THJ4 DBNL-220ENST00000494774 2117 ntAPPRIS P4 TSL 1 (best) BASIC13.16□□□□□ -0.3
VPS13DQ5THJ4 ZBED3-AS1-208ENST00000512001 1668 ntTSL 3 BASIC13.16□□□□□ -0.3
VPS13DQ5THJ4 NEK4P2-201ENST00000580004 1012 ntBASIC13.16□□□□□ -0.3
VPS13DQ5THJ4 HSPB6-201ENST00000004982 1457 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
VPS13DQ5THJ4 ITGB1BP1-203ENST00000359712 2126 ntTSL 2 BASIC13.16□□□□□ -0.3
VPS13DQ5THJ4 SLC39A4-202ENST00000301305 2174 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
VPS13DQ5THJ4 KLHDC4-201ENST00000270583 1886 ntAPPRIS P3 TSL 1 (best) BASIC13.16□□□□□ -0.3
VPS13DQ5THJ4 STXBP2-203ENST00000441779 1914 ntTSL 2 BASIC13.16□□□□□ -0.3
VPS13DQ5THJ4 AL451069.1-201ENST00000455414 634 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
VPS13DQ5THJ4 AC135586.2-201ENST00000537262 567 ntAPPRIS P1 TSL 4 BASIC13.16□□□□□ -0.3
VPS13DQ5THJ4 ELAC2-212ENST00000578071 579 ntTSL 4 BASIC13.16□□□□□ -0.3
VPS13DQ5THJ4 NUDT16L1-203ENST00000586252 922 ntTSL 3 BASIC13.16□□□□□ -0.3
VPS13DQ5THJ4 ZNF534-205ENST00000617900 1085 ntTSL 2 BASIC13.16□□□□□ -0.3
VPS13DQ5THJ4 ERVK13-1-203ENST00000564340 1449 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
VPS13DQ5THJ4 CACYBP-201ENST00000367679 2766 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
VPS13DQ5THJ4 LINC01785-201ENST00000598042 1112 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
VPS13DQ5THJ4 KRT8P45-201ENST00000414328 1447 ntBASIC13.15□□□□□ -0.3
VPS13DQ5THJ4 TBC1D3P2-202ENST00000577902 1649 ntBASIC13.15□□□□□ -0.3
VPS13DQ5THJ4 MRGPRF-203ENST00000441623 2282 ntAPPRIS P1 TSL 2 BASIC13.15□□□□□ -0.3
VPS13DQ5THJ4 GUSB-201ENST00000304895 2300 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
VPS13DQ5THJ4 MED26-207ENST00000611692 1444 ntTSL 1 (best) BASIC13.15□□□□□ -0.3
VPS13DQ5THJ4 AC141257.4-201ENST00000634557 245 ntBASIC13.15□□□□□ -0.3
VPS13DQ5THJ4 AC136944.6-201ENST00000634818 245 ntBASIC13.15□□□□□ -0.3
VPS13DQ5THJ4 SLC25A29-202ENST00000392908 2242 ntTSL 2 BASIC13.15□□□□□ -0.3
VPS13DQ5THJ4 FAM118B-209ENST00000533050 2402 ntAPPRIS P3 TSL 1 (best) BASIC13.15□□□□□ -0.3
VPS13DQ5THJ4 DERL1-203ENST00000419562 918 ntTSL 2 BASIC13.15□□□□□ -0.3
VPS13DQ5THJ4 ST6GALNAC4P1-201ENST00000435385 499 ntBASIC13.15□□□□□ -0.3
VPS13DQ5THJ4 HOMER2P1-201ENST00000455653 964 ntBASIC13.15□□□□□ -0.3
VPS13DQ5THJ4 TSPAN15-201ENST00000373290 1698 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
VPS13DQ5THJ4 CBWD3-201ENST00000360171 2165 ntAPPRIS P2 TSL 1 (best) BASIC13.15□□□□□ -0.3
VPS13DQ5THJ4 THOC3-212ENST00000628318 1442 ntTSL 5 BASIC13.15□□□□□ -0.3
VPS13DQ5THJ4 L2HGDH-203ENST00000421284 1958 ntAPPRIS P1 TSL 2 BASIC13.15□□□□□ -0.3
VPS13DQ5THJ4 MLF2-202ENST00000435120 1379 ntAPPRIS P1 TSL 2 BASIC13.15□□□□□ -0.3
VPS13DQ5THJ4 ART1-201ENST00000250693 1312 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
VPS13DQ5THJ4 AC092597.1-201ENST00000487352 616 ntBASIC13.15□□□□□ -0.3
VPS13DQ5THJ4 PP7080-204ENST00000510714 601 ntTSL 3 BASIC13.15□□□□□ -0.3
VPS13DQ5THJ4 AC092119.3-201ENST00000612618 583 ntBASIC13.15□□□□□ -0.3
VPS13DQ5THJ4 AL691432.3-201ENST00000621860 400 ntBASIC13.15□□□□□ -0.3
VPS13DQ5THJ4 AL023973.1-201ENST00000624619 620 ntBASIC13.15□□□□□ -0.3
VPS13DQ5THJ4 SQSTM1-216ENST00000626660 274 ntTSL 5 BASIC13.15□□□□□ -0.3
VPS13DQ5THJ4 KTI12-201ENST00000371614 1714 ntAPPRIS P1 BASIC13.15□□□□□ -0.3
VPS13DQ5THJ4 AC148477.3-202ENST00000376617 1766 ntTSL 2 BASIC13.14□□□□□ -0.31
VPS13DQ5THJ4 ABHD14A-ACY1-202ENST00000463937 1705 ntAPPRIS ALT2 TSL 5 BASIC13.14□□□□□ -0.31
VPS13DQ5THJ4 LINC00482-201ENST00000332012 2023 ntTSL 1 (best) BASIC13.14□□□□□ -0.31
VPS13DQ5THJ4 INS-201ENST00000250971 503 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
VPS13DQ5THJ4 ELK1-202ENST00000343894 736 ntAPPRIS ALT2 TSL 1 (best) BASIC13.14□□□□□ -0.31
VPS13DQ5THJ4 HIGD1A-204ENST00000452906 585 ntTSL 2 BASIC13.14□□□□□ -0.31
VPS13DQ5THJ4 UNC93B7-201ENST00000509439 705 ntBASIC13.14□□□□□ -0.31
VPS13DQ5THJ4 AP000721.2-201ENST00000537170 650 ntTSL 4 BASIC13.14□□□□□ -0.31
VPS13DQ5THJ4 CARHSP1-205ENST00000562843 843 ntTSL 2 BASIC13.14□□□□□ -0.31
VPS13DQ5THJ4 KMT5B-204ENST00000402185 1881 ntTSL 2 BASIC13.14□□□□□ -0.31
VPS13DQ5THJ4 SNHG10-201ENST00000500370 1531 ntTSL 2 BASIC13.14□□□□□ -0.31
VPS13DQ5THJ4 CXorf49-202ENST00000535490 1715 ntAPPRIS P1 TSL 5 BASIC13.14□□□□□ -0.31
Retrieved 100 of 98,524 protein–RNA pairs in 10.8 ms