Protein–RNA interactions for Protein: Q9QXN0

Shroom3, Protein Shroom3, mousemouse

Predictions only

Length 1,986 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Shroom3Q9QXN0 Ccdc50-202ENSMUST00000096127 1096 ntTSL 1 (best) BASIC23.9■■□□□ 1.42
Shroom3Q9QXN0 Kcna7-201ENSMUST00000107774 2182 ntAPPRIS P1 TSL 1 (best) BASIC23.9■■□□□ 1.42
Shroom3Q9QXN0 Ybx3-201ENSMUST00000032309 1853 ntAPPRIS P4 TSL 1 (best) BASIC23.89■■□□□ 1.42
Shroom3Q9QXN0 Ryk-201ENSMUST00000035142 2852 ntAPPRIS ALT2 TSL 1 (best) BASIC23.89■■□□□ 1.41
Shroom3Q9QXN0 Tsg101-201ENSMUST00000014546 1949 ntAPPRIS P1 TSL 1 (best) BASIC23.88■■□□□ 1.41
Shroom3Q9QXN0 Rbmxl2-201ENSMUST00000098135 1472 ntAPPRIS P1 BASIC23.88■■□□□ 1.41
Shroom3Q9QXN0 Frat2-201ENSMUST00000059231 2161 ntAPPRIS P1 BASIC23.88■■□□□ 1.41
Shroom3Q9QXN0 Acot5-201ENSMUST00000046422 1518 ntAPPRIS P1 TSL 1 (best) BASIC23.87■■□□□ 1.41
Shroom3Q9QXN0 Paqr3-202ENSMUST00000112968 1875 ntTSL 1 (best) BASIC23.86■■□□□ 1.41
Shroom3Q9QXN0 Ssbp4-205ENSMUST00000210369 1828 ntTSL 2 BASIC23.86■■□□□ 1.41
Shroom3Q9QXN0 Arf6-201ENSMUST00000050063 1534 ntAPPRIS P1 TSL 1 (best) BASIC23.86■■□□□ 1.41
Shroom3Q9QXN0 Snx3-203ENSMUST00000105500 753 ntTSL 5 BASIC23.86■■□□□ 1.41
Shroom3Q9QXN0 Xkr7-201ENSMUST00000037235 2711 ntAPPRIS P1 TSL 1 (best) BASIC23.86■■□□□ 1.41
Shroom3Q9QXN0 Msto1-202ENSMUST00000126245 1875 ntAPPRIS P1 TSL 1 (best) BASIC23.85■■□□□ 1.41
Shroom3Q9QXN0 Dbp-204ENSMUST00000211513 1156 ntTSL 5 BASIC23.85■■□□□ 1.41
Shroom3Q9QXN0 Cited2-203ENSMUST00000219558 2411 ntAPPRIS P1 BASIC23.84■■□□□ 1.41
Shroom3Q9QXN0 Tdp2-201ENSMUST00000038039 1957 ntAPPRIS P1 TSL 1 (best) BASIC23.84■■□□□ 1.41
Shroom3Q9QXN0 Gm11599-201ENSMUST00000118720 878 ntBASIC23.84■■□□□ 1.41
Shroom3Q9QXN0 D730045B01Rik-202ENSMUST00000186838 1543 ntTSL 1 (best) BASIC23.83■■□□□ 1.41
Shroom3Q9QXN0 Snrpe-202ENSMUST00000164574 597 ntTSL 3 BASIC23.83■■□□□ 1.41
Shroom3Q9QXN0 Pcbd2-201ENSMUST00000021958 544 ntTSL 1 (best) BASIC23.83■■□□□ 1.41
Shroom3Q9QXN0 Pm20d2-202ENSMUST00000119167 1339 ntTSL 1 (best) BASIC23.83■■□□□ 1.41
Shroom3Q9QXN0 Zdhhc2-202ENSMUST00000128166 1547 ntAPPRIS P1 TSL 1 (best) BASIC23.82■■□□□ 1.4
Shroom3Q9QXN0 A030003K21Rik-201ENSMUST00000222600 830 ntAPPRIS P1 BASIC23.82■■□□□ 1.4
Shroom3Q9QXN0 Thra-202ENSMUST00000103139 2246 ntAPPRIS P1 TSL 1 (best) BASIC23.82■■□□□ 1.4
Shroom3Q9QXN0 Jmy-202ENSMUST00000220513 1843 ntTSL 1 (best) BASIC23.81■■□□□ 1.4
Shroom3Q9QXN0 Asf1a-205ENSMUST00000219282 1150 ntTSL 5 BASIC23.81■■□□□ 1.4
Shroom3Q9QXN0 Pex10-201ENSMUST00000103180 1688 ntAPPRIS P1 TSL 1 (best) BASIC23.81■■□□□ 1.4
Shroom3Q9QXN0 Gm28052-201ENSMUST00000150388 380 ntTSL 3 BASIC23.8■■□□□ 1.4
Shroom3Q9QXN0 Ctbp1-211ENSMUST00000202868 2436 ntAPPRIS ALT1 TSL 1 (best) BASIC23.8■■□□□ 1.4
Shroom3Q9QXN0 Mnx1-201ENSMUST00000001608 2018 ntAPPRIS ALT2 TSL 5 BASIC23.79■■□□□ 1.4
Shroom3Q9QXN0 E130218I03Rik-208ENSMUST00000144222 1729 ntAPPRIS P1 TSL 1 (best) BASIC23.79■■□□□ 1.4
Shroom3Q9QXN0 Peg12-201ENSMUST00000094339 2640 ntAPPRIS P1 BASIC23.79■■□□□ 1.4
Shroom3Q9QXN0 6430548M08Rik-202ENSMUST00000108948 1762 ntTSL 1 (best) BASIC23.78■■□□□ 1.4
Shroom3Q9QXN0 Hmx3-201ENSMUST00000046093 1457 ntAPPRIS P1 TSL 1 (best) BASIC23.78■■□□□ 1.4
Shroom3Q9QXN0 Mpp6-209ENSMUST00000204545 2418 ntAPPRIS P1 TSL 5 BASIC23.78■■□□□ 1.4
Shroom3Q9QXN0 Preb-209ENSMUST00000202567 1869 ntTSL 1 (best) BASIC23.78■■□□□ 1.4
Shroom3Q9QXN0 Panx2-202ENSMUST00000161372 2314 ntTSL 1 (best) BASIC23.78■■□□□ 1.4
Shroom3Q9QXN0 Pate2-201ENSMUST00000098906 1690 ntAPPRIS ALT2 TSL 2 BASIC23.77■■□□□ 1.4
Shroom3Q9QXN0 Srcap-211ENSMUST00000189136 1960 ntTSL 1 (best) BASIC23.77■■□□□ 1.4
Shroom3Q9QXN0 Hmgn3-202ENSMUST00000162246 983 ntAPPRIS P4 TSL 1 (best) BASIC23.77■■□□□ 1.4
Shroom3Q9QXN0 Adgrb1-203ENSMUST00000185682 2744 ntTSL 1 (best) BASIC23.77■■□□□ 1.4
Shroom3Q9QXN0 Fank1-204ENSMUST00000209511 1392 ntTSL 5 BASIC23.76■■□□□ 1.39
Shroom3Q9QXN0 Gas1-202ENSMUST00000223933 1155 ntAPPRIS P2 BASIC23.76■■□□□ 1.39
Shroom3Q9QXN0 6330420H09Rik-201ENSMUST00000211371 1316 ntTSL 1 (best) BASIC23.76■■□□□ 1.39
Shroom3Q9QXN0 Cpe-201ENSMUST00000048967 2117 ntAPPRIS P1 TSL 1 (best) BASIC23.75■■□□□ 1.39
Shroom3Q9QXN0 Cys1-203ENSMUST00000156453 1732 ntAPPRIS P1 TSL 2 BASIC23.75■■□□□ 1.39
Shroom3Q9QXN0 Fus-201ENSMUST00000077609 1831 ntAPPRIS ALT2 TSL 1 (best) BASIC23.74■■□□□ 1.39
Shroom3Q9QXN0 1110008P14Rik-201ENSMUST00000048792 680 ntAPPRIS P1 TSL 1 (best) BASIC23.73■■□□□ 1.39
Shroom3Q9QXN0 Igfbp3-202ENSMUST00000135887 1709 ntAPPRIS P1 TSL 1 (best) BASIC23.73■■□□□ 1.39
Shroom3Q9QXN0 Slc39a13-201ENSMUST00000073575 2469 ntAPPRIS P1 TSL 1 (best) BASIC23.73■■□□□ 1.39
Shroom3Q9QXN0 Sntb1-202ENSMUST00000110200 1225 ntTSL 1 (best) BASIC23.72■■□□□ 1.39
Shroom3Q9QXN0 Cdkn2b-201ENSMUST00000097981 1393 ntAPPRIS P1 TSL 1 (best) BASIC23.72■■□□□ 1.39
Shroom3Q9QXN0 Pcsk1n-201ENSMUST00000041096 2193 ntAPPRIS P1 TSL 1 (best) BASIC23.72■■□□□ 1.39
Shroom3Q9QXN0 Bcl7b-202ENSMUST00000111187 564 ntTSL 1 (best) BASIC23.71■■□□□ 1.39
Shroom3Q9QXN0 Ell2-205ENSMUST00000222194 434 ntTSL 3 BASIC23.71■■□□□ 1.39
Shroom3Q9QXN0 Rab43-202ENSMUST00000032135 1262 ntTSL 1 (best) BASIC23.71■■□□□ 1.39
Shroom3Q9QXN0 Tmpo-205ENSMUST00000105293 1842 ntTSL 1 (best) BASIC23.71■■□□□ 1.39
Shroom3Q9QXN0 Esrra-201ENSMUST00000025906 2242 ntAPPRIS P1 TSL 1 (best) BASIC23.71■■□□□ 1.39
Shroom3Q9QXN0 E2f1-201ENSMUST00000000894 2755 ntAPPRIS ALT2 TSL 1 (best) BASIC23.71■■□□□ 1.39
Shroom3Q9QXN0 Rexo2-210ENSMUST00000217037 609 ntTSL 3 BASIC23.7■■□□□ 1.38
Shroom3Q9QXN0 Map2k7-207ENSMUST00000110999 1578 ntTSL 1 (best) BASIC23.69■■□□□ 1.38
Shroom3Q9QXN0 Emid1-201ENSMUST00000062821 1947 ntAPPRIS P2 TSL 1 (best) BASIC23.69■■□□□ 1.38
Shroom3Q9QXN0 Vdac1-202ENSMUST00000102758 2022 ntAPPRIS P1 TSL 1 (best) BASIC23.69■■□□□ 1.38
Shroom3Q9QXN0 Mxd4-202ENSMUST00000119171 1160 ntTSL 1 (best) BASIC23.68■■□□□ 1.38
Shroom3Q9QXN0 Tmem200b-201ENSMUST00000094666 1370 ntAPPRIS P1 BASIC23.68■■□□□ 1.38
Shroom3Q9QXN0 Ints11-202ENSMUST00000120794 1884 ntTSL 5 BASIC23.67■■□□□ 1.38
Shroom3Q9QXN0 Gm11175-201ENSMUST00000116172 543 ntBASIC23.67■■□□□ 1.38
Shroom3Q9QXN0 Rnf115-201ENSMUST00000029740 2209 ntAPPRIS P1 TSL 1 (best) BASIC23.67■■□□□ 1.38
Shroom3Q9QXN0 C2cd4b-201ENSMUST00000171652 1327 ntAPPRIS P1 TSL 1 (best) BASIC23.67■■□□□ 1.38
Shroom3Q9QXN0 Six3-201ENSMUST00000162695 2838 ntAPPRIS ALT2 TSL 5 BASIC23.67■■□□□ 1.38
Shroom3Q9QXN0 Ebf4-203ENSMUST00000110288 2982 ntAPPRIS ALT2 TSL 5 BASIC23.67■■□□□ 1.38
Shroom3Q9QXN0 Cadm1-210ENSMUST00000214542 899 ntTSL 1 (best) BASIC23.67■■□□□ 1.38
Shroom3Q9QXN0 Gpr27-201ENSMUST00000101122 2388 ntAPPRIS P1 BASIC23.66■■□□□ 1.38
Shroom3Q9QXN0 AC153890.1-201ENSMUST00000220021 2469 ntBASIC23.66■■□□□ 1.38
Shroom3Q9QXN0 Map3k10-204ENSMUST00000138243 1621 ntTSL 1 (best) BASIC23.65■■□□□ 1.38
Shroom3Q9QXN0 Gm13889-202ENSMUST00000148314 1240 ntAPPRIS P1 BASIC23.65■■□□□ 1.38
Shroom3Q9QXN0 Mospd3-201ENSMUST00000037620 1456 ntAPPRIS P1 TSL 1 (best) BASIC23.64■■□□□ 1.38
Shroom3Q9QXN0 Rpl31-203ENSMUST00000179954 630 ntAPPRIS P1 TSL 1 (best) BASIC23.64■■□□□ 1.38
Shroom3Q9QXN0 E130304I02Rik-202ENSMUST00000187873 696 ntTSL 1 (best) BASIC23.63■■□□□ 1.37
Shroom3Q9QXN0 Hoxb3os-202ENSMUST00000147410 1945 ntTSL 5 BASIC23.63■■□□□ 1.37
Shroom3Q9QXN0 Tnfsfm13-203ENSMUST00000180587 2235 ntAPPRIS P3 TSL 2 BASIC23.63■■□□□ 1.37
Shroom3Q9QXN0 Sox3-201ENSMUST00000135107 2065 ntAPPRIS P1 BASIC23.63■■□□□ 1.37
Shroom3Q9QXN0 AC122428.3-201ENSMUST00000215551 2290 ntBASIC23.63■■□□□ 1.37
Shroom3Q9QXN0 Mir6538-201ENSMUST00000183713 110 ntBASIC23.62■■□□□ 1.37
Shroom3Q9QXN0 Pard6a-201ENSMUST00000093195 1265 ntAPPRIS P3 TSL 1 (best) BASIC23.62■■□□□ 1.37
Shroom3Q9QXN0 Rcor3-207ENSMUST00000192866 1844 ntAPPRIS ALT2 TSL 5 BASIC23.61■■□□□ 1.37
Shroom3Q9QXN0 E130218I03Rik-204ENSMUST00000131447 888 ntAPPRIS P1 TSL 5 BASIC23.61■■□□□ 1.37
Shroom3Q9QXN0 Serpinb6a-206ENSMUST00000167163 1654 ntAPPRIS P1 TSL 5 BASIC23.61■■□□□ 1.37
Shroom3Q9QXN0 Krtap28-13-201ENSMUST00000188005 992 ntAPPRIS P1 BASIC23.6■■□□□ 1.37
Shroom3Q9QXN0 Adprhl2-201ENSMUST00000102617 1672 ntAPPRIS P1 TSL 1 (best) BASIC23.59■■□□□ 1.37
Shroom3Q9QXN0 Fam89b-202ENSMUST00000116558 1189 ntTSL 1 (best) BASIC23.58■■□□□ 1.37
Shroom3Q9QXN0 Gm27021-201ENSMUST00000181333 758 ntAPPRIS P1 TSL 4 BASIC23.58■■□□□ 1.37
Shroom3Q9QXN0 C130046K22Rik-201ENSMUST00000129780 727 ntTSL 5 BASIC23.58■■□□□ 1.36
Shroom3Q9QXN0 Smagp-202ENSMUST00000172334 952 ntAPPRIS P1 TSL 2 BASIC23.58■■□□□ 1.36
Shroom3Q9QXN0 Tceal3-201ENSMUST00000060904 1116 ntAPPRIS P1 TSL 1 (best) BASIC23.58■■□□□ 1.36
Shroom3Q9QXN0 Mtor-201ENSMUST00000057580 1003 ntTSL 1 (best) BASIC23.57■■□□□ 1.36
Shroom3Q9QXN0 Maz-204ENSMUST00000206254 2282 ntTSL 5 BASIC23.57■■□□□ 1.36
Shroom3Q9QXN0 Tmem260-208ENSMUST00000226400 2281 ntAPPRIS ALT2 BASIC23.57■■□□□ 1.36
Shroom3Q9QXN0 B3gat1-201ENSMUST00000115269 1665 ntTSL 1 (best) BASIC23.57■■□□□ 1.36
Retrieved 100 of 76,532 protein–RNA pairs in 212 ms