Protein–RNA interactions for Protein: Q99MA9

Nkx6-1, Homeobox protein Nkx-6.1, mousemouse

Predictions only

Length 365 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Nkx6-1Q99MA9 AC154454.1-201ENSMUST00000225253 216 ntBASIC22.48■■□□□ 1.19
Nkx6-1Q99MA9 Tspan33-201ENSMUST00000046750 1994 ntAPPRIS P3 TSL 1 (best) BASIC22.48■■□□□ 1.19
Nkx6-1Q99MA9 Mir3960-201ENSMUST00000198213 73 ntBASIC22.47■■□□□ 1.19
Nkx6-1Q99MA9 Bloc1s2-201ENSMUST00000079033 878 ntAPPRIS P1 TSL 1 (best) BASIC22.47■■□□□ 1.19
Nkx6-1Q99MA9 Cys1-203ENSMUST00000156453 1732 ntAPPRIS P1 TSL 2 BASIC22.46■■□□□ 1.19
Nkx6-1Q99MA9 Fam120aos-201ENSMUST00000180775 1780 ntTSL 1 (best) BASIC22.46■■□□□ 1.19
Nkx6-1Q99MA9 Gemin7-202ENSMUST00000117222 1023 ntAPPRIS P1 TSL 2 BASIC22.46■■□□□ 1.19
Nkx6-1Q99MA9 Fra10ac1-201ENSMUST00000067167 1402 ntAPPRIS P1 TSL 1 (best) BASIC22.46■■□□□ 1.19
Nkx6-1Q99MA9 Tmem98-201ENSMUST00000040865 1633 ntAPPRIS P1 TSL 1 (best) BASIC22.46■■□□□ 1.19
Nkx6-1Q99MA9 Lmo4-201ENSMUST00000120539 1669 ntAPPRIS P1 TSL 1 (best) BASIC22.46■■□□□ 1.19
Nkx6-1Q99MA9 Zfp703-201ENSMUST00000127097 587 ntTSL 2 BASIC22.44■■□□□ 1.18
Nkx6-1Q99MA9 Gm45716-202ENSMUST00000134929 2031 ntAPPRIS P1 TSL 1 (best) BASIC22.44■■□□□ 1.18
Nkx6-1Q99MA9 Mtch1-201ENSMUST00000095427 1922 ntAPPRIS P3 TSL 1 (best) BASIC22.44■■□□□ 1.18
Nkx6-1Q99MA9 Ndufs3-201ENSMUST00000005647 1046 ntAPPRIS P1 TSL 1 (best) BASIC22.43■■□□□ 1.18
Nkx6-1Q99MA9 Mospd3-201ENSMUST00000037620 1456 ntAPPRIS P1 TSL 1 (best) BASIC22.42■■□□□ 1.18
Nkx6-1Q99MA9 Hmox2-202ENSMUST00000118885 1392 ntAPPRIS P1 TSL 1 (best) BASIC22.42■■□□□ 1.18
Nkx6-1Q99MA9 Mbd3-203ENSMUST00000105348 1222 ntTSL 5 BASIC22.42■■□□□ 1.18
Nkx6-1Q99MA9 Gm45364-201ENSMUST00000210883 159 ntBASIC22.41■■□□□ 1.18
Nkx6-1Q99MA9 Smarcc1-203ENSMUST00000197480 1949 ntTSL 1 (best) BASIC22.41■■□□□ 1.18
Nkx6-1Q99MA9 Gm20512-201ENSMUST00000172483 618 ntTSL 1 (best) BASIC22.4■■□□□ 1.18
Nkx6-1Q99MA9 Gm15039-201ENSMUST00000118914 875 ntBASIC22.39■■□□□ 1.17
Nkx6-1Q99MA9 Gm9888-201ENSMUST00000150678 965 ntTSL 1 (best) BASIC22.39■■□□□ 1.17
Nkx6-1Q99MA9 Cacfd1-204ENSMUST00000114006 1648 ntAPPRIS P1 TSL 1 (best) BASIC22.39■■□□□ 1.17
Nkx6-1Q99MA9 A830092H15Rik-201ENSMUST00000099182 1229 ntBASIC22.38■■□□□ 1.17
Nkx6-1Q99MA9 Nsmce4a-202ENSMUST00000160289 1435 ntAPPRIS P1 TSL 1 (best) BASIC22.38■■□□□ 1.17
Nkx6-1Q99MA9 Cbr3-201ENSMUST00000039620 1170 ntAPPRIS P1 TSL 1 (best) BASIC22.37■■□□□ 1.17
Nkx6-1Q99MA9 Gpr25-201ENSMUST00000086395 1077 ntAPPRIS P1 BASIC22.37■■□□□ 1.17
Nkx6-1Q99MA9 Rtn2-201ENSMUST00000032559 1990 ntAPPRIS P3 TSL 1 (best) BASIC22.36■■□□□ 1.17
Nkx6-1Q99MA9 Fam241a-201ENSMUST00000057198 1607 ntTSL 1 (best) BASIC22.36■■□□□ 1.17
Nkx6-1Q99MA9 Trappc6b-201ENSMUST00000021380 1255 ntAPPRIS P1 TSL 1 (best) BASIC22.36■■□□□ 1.17
Nkx6-1Q99MA9 Cutc-201ENSMUST00000026199 1298 ntTSL 1 (best) BASIC22.36■■□□□ 1.17
Nkx6-1Q99MA9 Tor1a-201ENSMUST00000028200 1401 ntAPPRIS P1 TSL 1 (best) BASIC22.35■■□□□ 1.17
Nkx6-1Q99MA9 Ppp2r3d-202ENSMUST00000180270 450 ntTSL 1 (best) BASIC22.35■■□□□ 1.17
Nkx6-1Q99MA9 2510046G10Rik-202ENSMUST00000187458 1052 ntBASIC22.35■■□□□ 1.17
Nkx6-1Q99MA9 6430548M08Rik-202ENSMUST00000108948 1762 ntTSL 1 (best) BASIC22.35■■□□□ 1.17
Nkx6-1Q99MA9 Hmx3-201ENSMUST00000046093 1457 ntAPPRIS P1 TSL 1 (best) BASIC22.34■■□□□ 1.17
Nkx6-1Q99MA9 Emc8-208ENSMUST00000181950 747 ntTSL 2 BASIC22.33■■□□□ 1.17
Nkx6-1Q99MA9 Psmg1-201ENSMUST00000023630 1044 ntAPPRIS P1 TSL 1 (best) BASIC22.33■■□□□ 1.17
Nkx6-1Q99MA9 Hscb-201ENSMUST00000056937 804 ntAPPRIS P1 TSL 1 (best) BASIC22.33■■□□□ 1.17
Nkx6-1Q99MA9 Cyp26a1-201ENSMUST00000025946 1773 ntAPPRIS P1 TSL 1 (best) BASIC22.32■■□□□ 1.16
Nkx6-1Q99MA9 Cldn10-203ENSMUST00000100314 2128 ntAPPRIS P1 TSL 1 (best) BASIC22.31■■□□□ 1.16
Nkx6-1Q99MA9 Fam196a-201ENSMUST00000171394 2490 ntAPPRIS P1 TSL 5 BASIC22.3■■□□□ 1.16
Nkx6-1Q99MA9 Pmvk-201ENSMUST00000029564 1194 ntAPPRIS P1 TSL 1 (best) BASIC22.3■■□□□ 1.16
Nkx6-1Q99MA9 Cited4-201ENSMUST00000094814 1249 ntAPPRIS P1 BASIC22.3■■□□□ 1.16
Nkx6-1Q99MA9 Tmem55b-201ENSMUST00000049312 1594 ntAPPRIS ALT1 TSL 1 (best) BASIC22.29■■□□□ 1.16
Nkx6-1Q99MA9 Gm14523-201ENSMUST00000117260 558 ntBASIC22.29■■□□□ 1.16
Nkx6-1Q99MA9 Krtap28-10-201ENSMUST00000188323 957 ntAPPRIS P1 BASIC22.29■■□□□ 1.16
Nkx6-1Q99MA9 Pxmp2-201ENSMUST00000031472 1041 ntAPPRIS P1 TSL 1 (best) BASIC22.29■■□□□ 1.16
Nkx6-1Q99MA9 Rtn4r-201ENSMUST00000059589 1938 ntAPPRIS P1 TSL 1 (best) BASIC22.28■■□□□ 1.16
Nkx6-1Q99MA9 A730013G03Rik-202ENSMUST00000195012 2097 ntBASIC22.28■■□□□ 1.16
Nkx6-1Q99MA9 Cited1-202ENSMUST00000101336 1090 ntAPPRIS P1 TSL 1 (best) BASIC22.28■■□□□ 1.16
Nkx6-1Q99MA9 Ldb1-206ENSMUST00000152946 2108 ntAPPRIS ALT1 TSL 5 BASIC22.28■■□□□ 1.16
Nkx6-1Q99MA9 Efemp2-201ENSMUST00000070118 1781 ntTSL 1 (best) BASIC22.27■■□□□ 1.16
Nkx6-1Q99MA9 Tbx1-201ENSMUST00000009241 1777 ntAPPRIS P1 TSL 1 (best) BASIC22.27■■□□□ 1.16
Nkx6-1Q99MA9 4930426D05Rik-204ENSMUST00000144487 1393 ntTSL 5 BASIC22.26■■□□□ 1.15
Nkx6-1Q99MA9 Terf2-201ENSMUST00000068388 1915 ntAPPRIS ALT2 TSL 1 (best) BASIC22.26■■□□□ 1.15
Nkx6-1Q99MA9 Pcgf5-210ENSMUST00000225411 1626 ntAPPRIS P5 BASIC22.25■■□□□ 1.15
Nkx6-1Q99MA9 Zdhhc2-202ENSMUST00000128166 1547 ntAPPRIS P1 TSL 1 (best) BASIC22.25■■□□□ 1.15
Nkx6-1Q99MA9 Dusp22-201ENSMUST00000091672 1161 ntAPPRIS ALT2 TSL 1 (best) BASIC22.24■■□□□ 1.15
Nkx6-1Q99MA9 C530008M17Rik-201ENSMUST00000086909 1844 ntBASIC22.23■■□□□ 1.15
Nkx6-1Q99MA9 Faim-202ENSMUST00000112911 803 ntAPPRIS ALT1 TSL 2 BASIC22.23■■□□□ 1.15
Nkx6-1Q99MA9 Gm5067-201ENSMUST00000170449 1009 ntBASIC22.23■■□□□ 1.15
Nkx6-1Q99MA9 Gm37136-201ENSMUST00000194368 194 ntBASIC22.23■■□□□ 1.15
Nkx6-1Q99MA9 Mat2b-201ENSMUST00000040167 1949 ntAPPRIS P1 TSL 1 (best) BASIC22.23■■□□□ 1.15
Nkx6-1Q99MA9 Gm13889-201ENSMUST00000099689 1386 ntBASIC22.23■■□□□ 1.15
Nkx6-1Q99MA9 Ppp1r3e-201ENSMUST00000168622 1852 ntAPPRIS P1 TSL 5 BASIC22.22■■□□□ 1.15
Nkx6-1Q99MA9 Gm22567-201ENSMUST00000175542 342 ntBASIC22.22■■□□□ 1.15
Nkx6-1Q99MA9 Gm12818-201ENSMUST00000117562 1349 ntBASIC22.22■■□□□ 1.15
Nkx6-1Q99MA9 Slc35a3-202ENSMUST00000120120 1791 ntAPPRIS P1 TSL 1 (best) BASIC22.22■■□□□ 1.15
Nkx6-1Q99MA9 Ebag9-203ENSMUST00000227691 1945 ntAPPRIS P1 BASIC22.21■■□□□ 1.15
Nkx6-1Q99MA9 Hook1-202ENSMUST00000107083 1506 ntTSL 1 (best) BASIC22.21■■□□□ 1.15
Nkx6-1Q99MA9 Stau2-210ENSMUST00000149320 2214 ntTSL 5 BASIC22.21■■□□□ 1.15
Nkx6-1Q99MA9 Vamp4-206ENSMUST00000150040 901 ntAPPRIS P1 TSL 5 BASIC22.21■■□□□ 1.15
Nkx6-1Q99MA9 Cox11-201ENSMUST00000020851 1224 ntAPPRIS P2 TSL 1 (best) BASIC22.21■■□□□ 1.15
Nkx6-1Q99MA9 Kiss1-201ENSMUST00000007433 779 ntAPPRIS P1 TSL 2 BASIC22.21■■□□□ 1.15
Nkx6-1Q99MA9 Fam89b-203ENSMUST00000161368 1160 ntTSL 1 (best) BASIC22.19■■□□□ 1.14
Nkx6-1Q99MA9 Kiss1-202ENSMUST00000178033 496 ntAPPRIS P1 TSL 1 (best) BASIC22.19■■□□□ 1.14
Nkx6-1Q99MA9 Pdlim4-201ENSMUST00000018755 1182 ntAPPRIS P1 TSL 1 (best) BASIC22.19■■□□□ 1.14
Nkx6-1Q99MA9 4931440P22Rik-201ENSMUST00000099076 1786 ntTSL 1 (best) BASIC22.18■■□□□ 1.14
Nkx6-1Q99MA9 Gm40983-202ENSMUST00000222598 1198 ntTSL 5 BASIC22.18■■□□□ 1.14
Nkx6-1Q99MA9 Atp5j-201ENSMUST00000023608 809 ntAPPRIS P1 TSL 1 (best) BASIC22.18■■□□□ 1.14
Nkx6-1Q99MA9 Slc50a1-201ENSMUST00000029565 1022 ntAPPRIS P1 TSL 1 (best) BASIC22.18■■□□□ 1.14
Nkx6-1Q99MA9 Rundc3a-204ENSMUST00000107105 1861 ntTSL 1 (best) BASIC22.17■■□□□ 1.14
Nkx6-1Q99MA9 Arpc2-201ENSMUST00000006467 1404 ntAPPRIS P1 TSL 1 (best) BASIC22.17■■□□□ 1.14
Nkx6-1Q99MA9 A530095I07Rik-201ENSMUST00000070942 847 ntTSL 1 (best) BASIC22.17■■□□□ 1.14
Nkx6-1Q99MA9 Gm9905-201ENSMUST00000065740 1845 ntBASIC22.16■■□□□ 1.14
Nkx6-1Q99MA9 Pgls-201ENSMUST00000034264 893 ntAPPRIS P1 TSL 1 (best) BASIC22.16■■□□□ 1.14
Nkx6-1Q99MA9 Gm5812-201ENSMUST00000061073 957 ntBASIC22.16■■□□□ 1.14
Nkx6-1Q99MA9 Dleu7-201ENSMUST00000063169 1314 ntAPPRIS P1 TSL 1 (best) BASIC22.15■■□□□ 1.14
Nkx6-1Q99MA9 Hnrnpk-210ENSMUST00000176558 1053 ntTSL 2 BASIC22.15■■□□□ 1.14
Nkx6-1Q99MA9 Gm9910-201ENSMUST00000195385 1550 ntBASIC22.15■■□□□ 1.14
Nkx6-1Q99MA9 Mlf2-202ENSMUST00000180095 1475 ntAPPRIS P1 TSL 1 (best) BASIC22.15■■□□□ 1.14
Nkx6-1Q99MA9 Kansl2-202ENSMUST00000116400 2110 ntAPPRIS P2 TSL 1 (best) BASIC22.14■■□□□ 1.13
Nkx6-1Q99MA9 Id3-201ENSMUST00000008016 1278 ntAPPRIS P1 TSL 1 (best) BASIC22.14■■□□□ 1.13
Nkx6-1Q99MA9 3110021N24Rik-201ENSMUST00000178992 1812 ntAPPRIS P1 TSL 5 BASIC22.14■■□□□ 1.13
Nkx6-1Q99MA9 Prrx2-201ENSMUST00000041659 1441 ntAPPRIS P2 TSL 1 (best) BASIC22.14■■□□□ 1.13
Nkx6-1Q99MA9 Sec63-201ENSMUST00000019937 6032 ntAPPRIS P1 TSL 1 (best) BASIC22.13■■□□□ 1.13
Nkx6-1Q99MA9 Btf3l4-203ENSMUST00000102741 1033 ntAPPRIS P1 TSL 1 (best) BASIC22.13■■□□□ 1.13
Nkx6-1Q99MA9 Sec24d-208ENSMUST00000200333 307 ntTSL 1 (best) BASIC22.13■■□□□ 1.13
Nkx6-1Q99MA9 A030014E15Rik-201ENSMUST00000223400 796 ntAPPRIS P1 BASIC22.13■■□□□ 1.13
Retrieved 100 of 76,532 protein–RNA pairs in 26.5 ms