Protein–RNA interactions for Protein: Q99MA9

Nkx6-1, Homeobox protein Nkx-6.1, mousemouse

Predictions only

Length 365 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Nkx6-1Q99MA9 Gm25239-201ENSMUST00000174915 86 ntBASIC37.58■■■■□ 3.61
Nkx6-1Q99MA9 Smc2os-201ENSMUST00000141473 626 ntTSL 1 (best) BASIC34.96■■■■□ 3.19
Nkx6-1Q99MA9 1810037I17Rik-201ENSMUST00000106429 1160 ntAPPRIS P1 TSL 1 (best) BASIC34.43■■■■□ 3.1
Nkx6-1Q99MA9 Gm24109-201ENSMUST00000175489 103 ntBASIC32.79■■■□□ 2.84
Nkx6-1Q99MA9 Gm15042-201ENSMUST00000120212 883 ntBASIC32.42■■■□□ 2.78
Nkx6-1Q99MA9 Kdm2a-208ENSMUST00000176483 1128 ntTSL 1 (best) BASIC31.77■■■□□ 2.68
Nkx6-1Q99MA9 Gatad1-202ENSMUST00000119783 1278 ntAPPRIS ALT2 TSL 1 (best) BASIC31.74■■■□□ 2.67
Nkx6-1Q99MA9 Kcnmb4-201ENSMUST00000068233 1367 ntAPPRIS P1 TSL 1 (best) BASIC31.67■■■□□ 2.66
Nkx6-1Q99MA9 Gm15045-201ENSMUST00000117359 883 ntBASIC31.6■■■□□ 2.65
Nkx6-1Q99MA9 Gm23366-201ENSMUST00000175022 89 ntBASIC31.33■■■□□ 2.61
Nkx6-1Q99MA9 Arhgdig-201ENSMUST00000025019 1032 ntAPPRIS P1 TSL 1 (best) BASIC31.25■■■□□ 2.59
Nkx6-1Q99MA9 AC153911.1-202ENSMUST00000218534 1034 ntBASIC30.75■■■□□ 2.51
Nkx6-1Q99MA9 Fgf2-204ENSMUST00000138563 1240 ntAPPRIS P2 TSL 5 BASIC30.47■■■□□ 2.47
Nkx6-1Q99MA9 Gm20732-201ENSMUST00000175699 686 ntTSL 3 BASIC30.41■■■□□ 2.46
Nkx6-1Q99MA9 Fgf18-201ENSMUST00000020507 1086 ntAPPRIS P1 TSL 1 (best) BASIC30.37■■■□□ 2.45
Nkx6-1Q99MA9 Cd63-201ENSMUST00000026407 1063 ntAPPRIS P1 TSL 1 (best) BASIC30.3■■■□□ 2.44
Nkx6-1Q99MA9 Asmt-201ENSMUST00000178693 1191 ntAPPRIS P1 TSL 1 (best) BASIC30.26■■■□□ 2.43
Nkx6-1Q99MA9 Tusc1-201ENSMUST00000066774 1374 ntAPPRIS P1 BASIC30.03■■■□□ 2.4
Nkx6-1Q99MA9 Pkig-201ENSMUST00000064703 1036 ntAPPRIS P1 TSL 1 (best) BASIC29.93■■■□□ 2.38
Nkx6-1Q99MA9 Necab2-201ENSMUST00000098363 1976 ntAPPRIS P1 TSL 1 (best) BASIC29.92■■■□□ 2.38
Nkx6-1Q99MA9 Drap1-203ENSMUST00000113674 939 ntTSL 2 BASIC29.85■■■□□ 2.37
Nkx6-1Q99MA9 Rexo2-201ENSMUST00000034524 1077 ntAPPRIS P1 TSL 1 (best) BASIC29.81■■■□□ 2.36
Nkx6-1Q99MA9 Gm25238-201ENSMUST00000174914 89 ntBASIC29.79■■■□□ 2.36
Nkx6-1Q99MA9 Khdrbs3-201ENSMUST00000022954 1887 ntAPPRIS P1 TSL 1 (best) BASIC29.7■■■□□ 2.34
Nkx6-1Q99MA9 Ankrd40-202ENSMUST00000051221 1477 ntAPPRIS ALT2 TSL 1 (best) BASIC29.38■■■□□ 2.29
Nkx6-1Q99MA9 Rhno1-201ENSMUST00000057421 1584 ntAPPRIS P1 TSL 1 (best) BASIC29.17■■■□□ 2.26
Nkx6-1Q99MA9 Syce2-204ENSMUST00000170296 929 ntAPPRIS ALT2 TSL 2 BASIC29.16■■■□□ 2.26
Nkx6-1Q99MA9 Crk-202ENSMUST00000093115 965 ntTSL 1 (best) BASIC29.11■■■□□ 2.25
Nkx6-1Q99MA9 Ctdnep1-201ENSMUST00000108593 1627 ntAPPRIS P1 TSL 1 (best) BASIC29.02■■■□□ 2.24
Nkx6-1Q99MA9 Cacng8-202ENSMUST00000182222 1897 ntAPPRIS P1 TSL 5 BASIC29■■■□□ 2.23
Nkx6-1Q99MA9 B330016D10Rik-201ENSMUST00000049927 1701 ntBASIC29■■■□□ 2.23
Nkx6-1Q99MA9 Tmem240-201ENSMUST00000127188 1308 ntAPPRIS P1 TSL 2 BASIC28.92■■■□□ 2.22
Nkx6-1Q99MA9 Ybx2-201ENSMUST00000018698 1673 ntAPPRIS P3 TSL 1 (best) BASIC28.83■■■□□ 2.21
Nkx6-1Q99MA9 Plekho1-201ENSMUST00000015889 1931 ntAPPRIS P1 TSL 1 (best) BASIC28.81■■■□□ 2.2
Nkx6-1Q99MA9 Gm25262-201ENSMUST00000174934 133 ntBASIC28.78■■■□□ 2.2
Nkx6-1Q99MA9 Rnf149-204ENSMUST00000195705 389 ntTSL 3 BASIC28.78■■■□□ 2.2
Nkx6-1Q99MA9 Crk-204ENSMUST00000108426 671 ntTSL 3 BASIC28.76■■■□□ 2.19
Nkx6-1Q99MA9 Hoxd8-202ENSMUST00000074721 1758 ntAPPRIS ALT2 TSL 1 (best) BASIC28.75■■■□□ 2.19
Nkx6-1Q99MA9 Drap1-201ENSMUST00000025853 992 ntAPPRIS P1 TSL 1 (best) BASIC28.62■■■□□ 2.17
Nkx6-1Q99MA9 Tprgl-202ENSMUST00000105639 642 ntTSL 5 BASIC28.51■■■□□ 2.15
Nkx6-1Q99MA9 4930537H20Rik-201ENSMUST00000200437 1683 ntBASIC28.5■■■□□ 2.15
Nkx6-1Q99MA9 B430219N15Rik-202ENSMUST00000180853 1105 ntBASIC28.33■■■□□ 2.13
Nkx6-1Q99MA9 Gm27325-201ENSMUST00000175467 74 ntBASIC28.32■■■□□ 2.12
Nkx6-1Q99MA9 BC030336-205ENSMUST00000208454 813 ntTSL 2 BASIC28.3■■■□□ 2.12
Nkx6-1Q99MA9 Gm26115-201ENSMUST00000175605 87 ntBASIC28.25■■■□□ 2.11
Nkx6-1Q99MA9 Ppp2cb-201ENSMUST00000009774 1469 ntAPPRIS P1 TSL 1 (best) BASIC28.25■■■□□ 2.11
Nkx6-1Q99MA9 Mapk3-201ENSMUST00000050201 1267 ntAPPRIS ALT2 TSL 3 BASIC28.23■■■□□ 2.11
Nkx6-1Q99MA9 Kctd9-204ENSMUST00000150768 1302 ntAPPRIS P1 TSL 5 BASIC28.18■■■□□ 2.1
Nkx6-1Q99MA9 Trnp1-202ENSMUST00000125541 1654 ntAPPRIS P1 TSL 1 (best) BASIC28.12■■■□□ 2.09
Nkx6-1Q99MA9 Rab21-202ENSMUST00000218831 843 ntBASIC28.09■■■□□ 2.09
Nkx6-1Q99MA9 Glrx5-203ENSMUST00000223244 793 ntTSL 5 BASIC28.08■■■□□ 2.09
Nkx6-1Q99MA9 Gm8109-201ENSMUST00000194076 746 ntBASIC28.03■■■□□ 2.08
Nkx6-1Q99MA9 Olfm1-203ENSMUST00000102879 1072 ntTSL 1 (best) BASIC28.02■■■□□ 2.08
Nkx6-1Q99MA9 Rnf126-201ENSMUST00000047203 1639 ntAPPRIS P1 TSL 1 (best) BASIC28■■■□□ 2.07
Nkx6-1Q99MA9 Bcl7c-201ENSMUST00000061468 1132 ntAPPRIS P1 TSL 1 (best) BASIC27.97■■■□□ 2.07
Nkx6-1Q99MA9 Fam220a-203ENSMUST00000118121 919 ntTSL 1 (best) BASIC27.96■■■□□ 2.07
Nkx6-1Q99MA9 Hnrnpd-201ENSMUST00000019128 2000 ntAPPRIS ALT2 TSL 1 (best) BASIC27.96■■■□□ 2.07
Nkx6-1Q99MA9 Pabpn1-207ENSMUST00000150975 1775 ntAPPRIS ALT2 TSL 1 (best) BASIC27.94■■■□□ 2.06
Nkx6-1Q99MA9 Cacng8-201ENSMUST00000092351 1380 ntAPPRIS P1 TSL 1 (best) BASIC27.88■■■□□ 2.05
Nkx6-1Q99MA9 Gsx2-202ENSMUST00000160104 1182 ntTSL 1 (best) BASIC27.83■■■□□ 2.05
Nkx6-1Q99MA9 Ppp2r5c-206ENSMUST00000222276 1802 ntTSL 2 BASIC27.81■■■□□ 2.04
Nkx6-1Q99MA9 Crebl2-202ENSMUST00000111937 612 ntTSL 3 BASIC27.71■■■□□ 2.03
Nkx6-1Q99MA9 Fam122a-201ENSMUST00000099556 855 ntAPPRIS P1 BASIC27.7■■■□□ 2.02
Nkx6-1Q99MA9 Sh3glb2-214ENSMUST00000163668 1733 ntTSL 5 BASIC27.66■■■□□ 2.02
Nkx6-1Q99MA9 Svbp-202ENSMUST00000097908 832 ntTSL 2 BASIC27.57■■■□□ 2
Nkx6-1Q99MA9 B3gat3-201ENSMUST00000096243 1601 ntAPPRIS P1 TSL 1 (best) BASIC27.52■■■□□ 2
Nkx6-1Q99MA9 Gpr137c-202ENSMUST00000147957 1395 ntAPPRIS ALT2 TSL 1 (best) BASIC27.45■■□□□ 1.98
Nkx6-1Q99MA9 Pabpn1-202ENSMUST00000116476 1761 ntAPPRIS ALT2 TSL 1 (best) BASIC27.43■■□□□ 1.98
Nkx6-1Q99MA9 Tmed7-201ENSMUST00000036030 1436 ntTSL 5 BASIC27.33■■□□□ 1.97
Nkx6-1Q99MA9 Nrgn-201ENSMUST00000065668 1453 ntAPPRIS P1 TSL 1 (best) BASIC27.33■■□□□ 1.97
Nkx6-1Q99MA9 Mbd2-202ENSMUST00000114946 1290 ntTSL 1 (best) BASIC27.32■■□□□ 1.96
Nkx6-1Q99MA9 Ino80b-202ENSMUST00000113935 1503 ntAPPRIS ALT2 TSL 1 (best) BASIC27.31■■□□□ 1.96
Nkx6-1Q99MA9 Psd-208ENSMUST00000224556 2034 ntBASIC27.3■■□□□ 1.96
Nkx6-1Q99MA9 Maz-202ENSMUST00000205461 796 ntTSL 5 BASIC27.3■■□□□ 1.96
Nkx6-1Q99MA9 Rrnad1-207ENSMUST00000160143 1568 ntTSL 5 BASIC27.28■■□□□ 1.96
Nkx6-1Q99MA9 Enho-201ENSMUST00000127306 1269 ntAPPRIS P1 TSL 1 (best) BASIC27.28■■□□□ 1.96
Nkx6-1Q99MA9 Pabpn1-201ENSMUST00000022808 1030 ntAPPRIS P2 TSL 1 (best) BASIC27.27■■□□□ 1.96
Nkx6-1Q99MA9 Vps37d-201ENSMUST00000067935 1544 ntAPPRIS P1 TSL 1 (best) BASIC27.23■■□□□ 1.95
Nkx6-1Q99MA9 Tmed7-203ENSMUST00000151189 1348 ntAPPRIS P1 TSL 1 (best) BASIC27.19■■□□□ 1.94
Nkx6-1Q99MA9 Gm17082-201ENSMUST00000166043 1091 ntBASIC27.17■■□□□ 1.94
Nkx6-1Q99MA9 Sh3glb2-204ENSMUST00000113621 1851 ntTSL 5 BASIC27.17■■□□□ 1.94
Nkx6-1Q99MA9 Gdf7-201ENSMUST00000037313 1423 ntAPPRIS P2 TSL 5 BASIC27.09■■□□□ 1.93
Nkx6-1Q99MA9 Gm24804-201ENSMUST00000174982 85 ntBASIC27.05■■□□□ 1.92
Nkx6-1Q99MA9 Gm12339-201ENSMUST00000127424 728 ntTSL 3 BASIC27■■□□□ 1.91
Nkx6-1Q99MA9 Clec2l-201ENSMUST00000114874 1428 ntAPPRIS P1 TSL 2 BASIC26.99■■□□□ 1.91
Nkx6-1Q99MA9 Gm27322-201ENSMUST00000184007 104 ntBASIC26.96■■□□□ 1.91
Nkx6-1Q99MA9 Agap3-206ENSMUST00000212381 1191 ntTSL 5 BASIC26.95■■□□□ 1.9
Nkx6-1Q99MA9 Ubtd2-201ENSMUST00000051053 1012 ntAPPRIS P1 TSL 1 (best) BASIC26.91■■□□□ 1.9
Nkx6-1Q99MA9 Hnrnpd-203ENSMUST00000112939 1670 ntAPPRIS ALT2 TSL 5 BASIC26.91■■□□□ 1.9
Nkx6-1Q99MA9 Cyhr1-203ENSMUST00000176274 1854 ntAPPRIS ALT2 TSL 1 (best) BASIC26.87■■□□□ 1.89
Nkx6-1Q99MA9 Fcho2-204ENSMUST00000179563 1586 ntTSL 5 BASIC26.87■■□□□ 1.89
Nkx6-1Q99MA9 Tmem165-201ENSMUST00000031144 1897 ntAPPRIS P1 TSL 1 (best) BASIC26.85■■□□□ 1.89
Nkx6-1Q99MA9 Nkx1-1-201ENSMUST00000173348 1209 ntAPPRIS P1 TSL 5 BASIC26.83■■□□□ 1.89
Nkx6-1Q99MA9 Bzw1-202ENSMUST00000186949 1492 ntTSL 5 BASIC26.81■■□□□ 1.88
Nkx6-1Q99MA9 Snf8-202ENSMUST00000107700 849 ntTSL 2 BASIC26.81■■□□□ 1.88
Nkx6-1Q99MA9 Atoh7-201ENSMUST00000044059 1629 ntAPPRIS P1 BASIC26.8■■□□□ 1.88
Nkx6-1Q99MA9 Mbd2-201ENSMUST00000074058 1953 ntAPPRIS P1 TSL 1 (best) BASIC26.77■■□□□ 1.88
Nkx6-1Q99MA9 Uhrf2-202ENSMUST00000112552 1464 ntTSL 1 (best) BASIC26.74■■□□□ 1.87
Nkx6-1Q99MA9 Mta3-202ENSMUST00000112349 1728 ntAPPRIS ALT2 TSL 1 (best) BASIC26.71■■□□□ 1.87
Nkx6-1Q99MA9 Il17d-201ENSMUST00000089494 1274 ntAPPRIS P1 TSL 1 (best) BASIC26.69■■□□□ 1.86
Retrieved 100 of 76,532 protein–RNA pairs in 47.3 ms