Protein–RNA interactions for Protein: Q91XX9

Pcdhga9, Protocadherin gamma A9, mousemouse

Predictions only

Length 932 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Pcdhga9Q91XX9 1110065P20Rik-201ENSMUST00000106190 968 ntAPPRIS P1 TSL 2 BASIC23.34■■□□□ 1.33
Pcdhga9Q91XX9 Gm7432-201ENSMUST00000210343 879 ntBASIC23.34■■□□□ 1.33
Pcdhga9Q91XX9 Gm45580-201ENSMUST00000210430 889 ntTSL 5 BASIC23.34■■□□□ 1.33
Pcdhga9Q91XX9 2410017I17Rik-201ENSMUST00000056774 1509 ntTSL 5 BASIC23.33■■□□□ 1.32
Pcdhga9Q91XX9 Lemd2-201ENSMUST00000055117 2595 ntAPPRIS P1 TSL 1 (best) BASIC23.32■■□□□ 1.32
Pcdhga9Q91XX9 Nrep-202ENSMUST00000168890 2185 ntAPPRIS P1 TSL 1 (best) BASIC23.32■■□□□ 1.32
Pcdhga9Q91XX9 Reep6-202ENSMUST00000105354 2208 ntAPPRIS P3 TSL 1 (best) BASIC23.32■■□□□ 1.32
Pcdhga9Q91XX9 Reep6-205ENSMUST00000105358 2208 ntTSL 1 (best) BASIC23.32■■□□□ 1.32
Pcdhga9Q91XX9 Tmem200b-201ENSMUST00000094666 1370 ntAPPRIS P1 BASIC23.31■■□□□ 1.32
Pcdhga9Q91XX9 Snx3-203ENSMUST00000105500 753 ntTSL 5 BASIC23.31■■□□□ 1.32
Pcdhga9Q91XX9 1700003F12Rik-202ENSMUST00000109709 704 ntAPPRIS ALT2 TSL 3 BASIC23.31■■□□□ 1.32
Pcdhga9Q91XX9 1700003F12Rik-201ENSMUST00000045116 704 ntAPPRIS P2 TSL 1 (best) BASIC23.31■■□□□ 1.32
Pcdhga9Q91XX9 Mast2-203ENSMUST00000106485 5705 ntAPPRIS ALT2 TSL 1 (best) BASIC23.31■■□□□ 1.32
Pcdhga9Q91XX9 Mast2-204ENSMUST00000106486 5723 ntAPPRIS P4 TSL 1 (best) BASIC23.31■■□□□ 1.32
Pcdhga9Q91XX9 B3gat1-201ENSMUST00000115269 1665 ntTSL 1 (best) BASIC23.3■■□□□ 1.32
Pcdhga9Q91XX9 Gm28052-201ENSMUST00000150388 380 ntTSL 3 BASIC23.3■■□□□ 1.32
Pcdhga9Q91XX9 Tdp2-201ENSMUST00000038039 1957 ntAPPRIS P1 TSL 1 (best) BASIC23.3■■□□□ 1.32
Pcdhga9Q91XX9 Tada2b-202ENSMUST00000119916 1321 ntTSL 5 BASIC23.3■■□□□ 1.32
Pcdhga9Q91XX9 Rcor2-201ENSMUST00000066646 2801 ntAPPRIS P1 TSL 1 (best) BASIC23.29■■□□□ 1.32
Pcdhga9Q91XX9 Cacfd1-203ENSMUST00000114005 1286 ntTSL 1 (best) BASIC23.29■■□□□ 1.32
Pcdhga9Q91XX9 Mnx1-201ENSMUST00000001608 2018 ntAPPRIS ALT2 TSL 5 BASIC23.29■■□□□ 1.32
Pcdhga9Q91XX9 Gm19582-201ENSMUST00000187511 841 ntTSL 2 BASIC23.29■■□□□ 1.32
Pcdhga9Q91XX9 Mapkap1-201ENSMUST00000113123 1530 ntTSL 5 BASIC23.28■■□□□ 1.32
Pcdhga9Q91XX9 Foxc1-201ENSMUST00000062292 5844 ntAPPRIS P1 BASIC23.28■■□□□ 1.32
Pcdhga9Q91XX9 E130218I03Rik-208ENSMUST00000144222 1729 ntAPPRIS P1 TSL 1 (best) BASIC23.28■■□□□ 1.32
Pcdhga9Q91XX9 Ppa2-201ENSMUST00000029644 1226 ntAPPRIS P3 TSL 1 (best) BASIC23.28■■□□□ 1.32
Pcdhga9Q91XX9 St7-208ENSMUST00000115419 2194 ntTSL 1 (best) BASIC23.28■■□□□ 1.32
Pcdhga9Q91XX9 Rcan1-202ENSMUST00000060005 2324 ntTSL 1 (best) BASIC23.27■■□□□ 1.32
Pcdhga9Q91XX9 Zswim6-201ENSMUST00000105097 5456 ntTSL 5 BASIC23.26■■□□□ 1.31
Pcdhga9Q91XX9 AC158592.1-201ENSMUST00000215560 1113 ntTSL 5 BASIC23.26■■□□□ 1.31
Pcdhga9Q91XX9 Fank1-204ENSMUST00000209511 1392 ntTSL 5 BASIC23.26■■□□□ 1.31
Pcdhga9Q91XX9 Tmpo-205ENSMUST00000105293 1842 ntTSL 1 (best) BASIC23.24■■□□□ 1.31
Pcdhga9Q91XX9 Gxylt1-202ENSMUST00000057896 1891 ntAPPRIS ALT2 TSL 5 BASIC23.24■■□□□ 1.31
Pcdhga9Q91XX9 Map2k7-207ENSMUST00000110999 1578 ntTSL 1 (best) BASIC23.23■■□□□ 1.31
Pcdhga9Q91XX9 Phox2a-201ENSMUST00000008090 1609 ntAPPRIS P1 TSL 1 (best) BASIC23.23■■□□□ 1.31
Pcdhga9Q91XX9 Igfbp3-202ENSMUST00000135887 1709 ntAPPRIS P1 TSL 1 (best) BASIC23.23■■□□□ 1.31
Pcdhga9Q91XX9 Bcl7b-202ENSMUST00000111187 564 ntTSL 1 (best) BASIC23.23■■□□□ 1.31
Pcdhga9Q91XX9 Rab40c-209ENSMUST00000179998 2456 ntAPPRIS P1 TSL 5 BASIC23.23■■□□□ 1.31
Pcdhga9Q91XX9 Clptm1l-201ENSMUST00000022102 2340 ntAPPRIS P1 TSL 1 (best) BASIC23.22■■□□□ 1.31
Pcdhga9Q91XX9 Epb41l4b-203ENSMUST00000095076 6746 ntAPPRIS ALT2 TSL 5 BASIC23.21■■□□□ 1.31
Pcdhga9Q91XX9 Smurf1-201ENSMUST00000085684 5343 ntAPPRIS P4 TSL 1 (best) BASIC23.21■■□□□ 1.31
Pcdhga9Q91XX9 Flt3l-211ENSMUST00000211429 1358 ntAPPRIS ALT2 TSL 1 (best) BASIC23.21■■□□□ 1.31
Pcdhga9Q91XX9 Map3k10-204ENSMUST00000138243 1621 ntTSL 1 (best) BASIC23.21■■□□□ 1.31
Pcdhga9Q91XX9 Ints11-202ENSMUST00000120794 1884 ntTSL 5 BASIC23.21■■□□□ 1.31
Pcdhga9Q91XX9 Jmy-202ENSMUST00000220513 1843 ntTSL 1 (best) BASIC23.2■■□□□ 1.3
Pcdhga9Q91XX9 Thra-202ENSMUST00000103139 2246 ntAPPRIS P1 TSL 1 (best) BASIC23.19■■□□□ 1.3
Pcdhga9Q91XX9 Mxd4-202ENSMUST00000119171 1160 ntTSL 1 (best) BASIC23.19■■□□□ 1.3
Pcdhga9Q91XX9 Pcbd2-201ENSMUST00000021958 544 ntTSL 1 (best) BASIC23.19■■□□□ 1.3
Pcdhga9Q91XX9 Preb-209ENSMUST00000202567 1869 ntTSL 1 (best) BASIC23.19■■□□□ 1.3
Pcdhga9Q91XX9 Tsen34-211ENSMUST00000205287 1375 ntTSL 5 BASIC23.18■■□□□ 1.3
Pcdhga9Q91XX9 A030003K21Rik-201ENSMUST00000222600 830 ntAPPRIS P1 BASIC23.18■■□□□ 1.3
Pcdhga9Q91XX9 Frat2-201ENSMUST00000059231 2161 ntAPPRIS P1 BASIC23.17■■□□□ 1.3
Pcdhga9Q91XX9 Cpsf4-205ENSMUST00000160629 1713 ntAPPRIS ALT1 TSL 1 (best) BASIC23.17■■□□□ 1.3
Pcdhga9Q91XX9 Gemin7-202ENSMUST00000117222 1023 ntAPPRIS P1 TSL 2 BASIC23.17■■□□□ 1.3
Pcdhga9Q91XX9 Gm11599-201ENSMUST00000118720 878 ntBASIC23.17■■□□□ 1.3
Pcdhga9Q91XX9 Ell2-205ENSMUST00000222194 434 ntTSL 3 BASIC23.17■■□□□ 1.3
Pcdhga9Q91XX9 Hmgn3-202ENSMUST00000162246 983 ntAPPRIS P4 TSL 1 (best) BASIC23.16■■□□□ 1.3
Pcdhga9Q91XX9 Rexo2-210ENSMUST00000217037 609 ntTSL 3 BASIC23.15■■□□□ 1.3
Pcdhga9Q91XX9 Eci1-201ENSMUST00000024946 1091 ntAPPRIS P1 TSL 1 (best) BASIC23.15■■□□□ 1.3
Pcdhga9Q91XX9 Msto1-202ENSMUST00000126245 1875 ntAPPRIS P1 TSL 1 (best) BASIC23.15■■□□□ 1.3
Pcdhga9Q91XX9 Vdac1-202ENSMUST00000102758 2022 ntAPPRIS P1 TSL 1 (best) BASIC23.14■■□□□ 1.29
Pcdhga9Q91XX9 Sh3rf1-201ENSMUST00000034060 5479 ntAPPRIS P1 TSL 1 (best) BASIC23.14■■□□□ 1.29
Pcdhga9Q91XX9 Paqr3-202ENSMUST00000112968 1875 ntTSL 1 (best) BASIC23.13■■□□□ 1.29
Pcdhga9Q91XX9 Snrpe-202ENSMUST00000164574 597 ntTSL 3 BASIC23.13■■□□□ 1.29
Pcdhga9Q91XX9 Pcsk1n-201ENSMUST00000041096 2193 ntAPPRIS P1 TSL 1 (best) BASIC23.13■■□□□ 1.29
Pcdhga9Q91XX9 Fus-201ENSMUST00000077609 1831 ntAPPRIS ALT2 TSL 1 (best) BASIC23.12■■□□□ 1.29
Pcdhga9Q91XX9 Hoxb3os-202ENSMUST00000147410 1945 ntTSL 5 BASIC23.12■■□□□ 1.29
Pcdhga9Q91XX9 Kcna7-201ENSMUST00000107774 2182 ntAPPRIS P1 TSL 1 (best) BASIC23.12■■□□□ 1.29
Pcdhga9Q91XX9 Pex10-201ENSMUST00000103180 1688 ntAPPRIS P1 TSL 1 (best) BASIC23.12■■□□□ 1.29
Pcdhga9Q91XX9 Csnk1g2-201ENSMUST00000079773 2348 ntTSL 1 (best) BASIC23.11■■□□□ 1.29
Pcdhga9Q91XX9 Srcap-211ENSMUST00000189136 1960 ntTSL 1 (best) BASIC23.1■■□□□ 1.29
Pcdhga9Q91XX9 Zfp422-201ENSMUST00000057540 2375 ntAPPRIS P1 TSL 1 (best) BASIC23.09■■□□□ 1.29
Pcdhga9Q91XX9 Sox3-201ENSMUST00000135107 2065 ntAPPRIS P1 BASIC23.09■■□□□ 1.29
Pcdhga9Q91XX9 Ctbp1-211ENSMUST00000202868 2436 ntAPPRIS ALT1 TSL 1 (best) BASIC23.08■■□□□ 1.28
Pcdhga9Q91XX9 Gm37847-201ENSMUST00000192163 1497 ntBASIC23.07■■□□□ 1.28
Pcdhga9Q91XX9 Gm31748-201ENSMUST00000194938 1497 ntBASIC23.07■■□□□ 1.28
Pcdhga9Q91XX9 Crls1-201ENSMUST00000028835 1924 ntAPPRIS P1 TSL 1 (best) BASIC23.07■■□□□ 1.28
Pcdhga9Q91XX9 Emid1-201ENSMUST00000062821 1947 ntAPPRIS P2 TSL 1 (best) BASIC23.07■■□□□ 1.28
Pcdhga9Q91XX9 6330420H09Rik-201ENSMUST00000211371 1316 ntTSL 1 (best) BASIC23.07■■□□□ 1.28
Pcdhga9Q91XX9 Tmbim4-204ENSMUST00000134797 486 ntTSL 1 (best) BASIC23.06■■□□□ 1.28
Pcdhga9Q91XX9 Panx2-202ENSMUST00000161372 2314 ntTSL 1 (best) BASIC23.06■■□□□ 1.28
Pcdhga9Q91XX9 C2cd4b-201ENSMUST00000171652 1327 ntAPPRIS P1 TSL 1 (best) BASIC23.06■■□□□ 1.28
Pcdhga9Q91XX9 Particl-201ENSMUST00000205370 1560 ntBASIC23.06■■□□□ 1.28
Pcdhga9Q91XX9 Kansl2-201ENSMUST00000023727 2311 ntAPPRIS ALT2 TSL 5 BASIC23.05■■□□□ 1.28
Pcdhga9Q91XX9 Otulin-201ENSMUST00000059662 1491 ntAPPRIS P1 TSL 1 (best) BASIC23.05■■□□□ 1.28
Pcdhga9Q91XX9 Suv39h2-202ENSMUST00000060618 1831 ntTSL 1 (best) BASIC23.04■■□□□ 1.28
Pcdhga9Q91XX9 Gm27021-201ENSMUST00000181333 758 ntAPPRIS P1 TSL 4 BASIC23.04■■□□□ 1.28
Pcdhga9Q91XX9 Zswim5-201ENSMUST00000044823 5582 ntAPPRIS P1 TSL 1 (best) BASIC23.03■■□□□ 1.28
Pcdhga9Q91XX9 Slc39a13-201ENSMUST00000073575 2469 ntAPPRIS P1 TSL 1 (best) BASIC23.02■■□□□ 1.28
Pcdhga9Q91XX9 Gm13889-202ENSMUST00000148314 1240 ntAPPRIS P1 BASIC23.02■■□□□ 1.28
Pcdhga9Q91XX9 Adprhl2-201ENSMUST00000102617 1672 ntAPPRIS P1 TSL 1 (best) BASIC23.02■■□□□ 1.28
Pcdhga9Q91XX9 E2f6-201ENSMUST00000020908 2418 ntAPPRIS P1 TSL 1 (best) BASIC23.02■■□□□ 1.28
Pcdhga9Q91XX9 Serpinb6a-206ENSMUST00000167163 1654 ntAPPRIS P1 TSL 5 BASIC23.01■■□□□ 1.27
Pcdhga9Q91XX9 Dnttip1-201ENSMUST00000017443 1664 ntAPPRIS P1 TSL 1 (best) BASIC23.01■■□□□ 1.27
Pcdhga9Q91XX9 Mtor-201ENSMUST00000057580 1003 ntTSL 1 (best) BASIC23.01■■□□□ 1.27
Pcdhga9Q91XX9 Ccdc136-206ENSMUST00000145310 1703 ntAPPRIS ALT2 TSL 5 BASIC23.01■■□□□ 1.27
Pcdhga9Q91XX9 Esrra-201ENSMUST00000025906 2242 ntAPPRIS P1 TSL 1 (best) BASIC23.01■■□□□ 1.27
Pcdhga9Q91XX9 Tmem55b-201ENSMUST00000049312 1594 ntAPPRIS ALT1 TSL 1 (best) BASIC23.01■■□□□ 1.27
Pcdhga9Q91XX9 Fam89b-202ENSMUST00000116558 1189 ntTSL 1 (best) BASIC23■■□□□ 1.27
Pcdhga9Q91XX9 Gm26536-201ENSMUST00000181072 1196 ntTSL 1 (best) BASIC23■■□□□ 1.27
Retrieved 100 of 76,532 protein–RNA pairs in 24.9 ms