Protein–RNA interactions for Protein: Q8VI40

Trim60, Tripartite motif-containing protein 60, mousemouse

Predictions only

Length 466 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim60Q8VI40 Cpsf4-205ENSMUST00000160629 1713 ntAPPRIS ALT1 TSL 1 (best) BASIC24.31■■□□□ 1.48
Trim60Q8VI40 Actr3b-202ENSMUST00000128727 2031 ntTSL 1 (best) BASIC24.3■■□□□ 1.48
Trim60Q8VI40 Gna13-202ENSMUST00000106702 914 ntTSL 1 (best) BASIC24.3■■□□□ 1.48
Trim60Q8VI40 Cdv3-205ENSMUST00000189896 1023 ntAPPRIS ALT2 TSL 1 (best) BASIC24.3■■□□□ 1.48
Trim60Q8VI40 Suv39h2-202ENSMUST00000060618 1831 ntTSL 1 (best) BASIC24.3■■□□□ 1.48
Trim60Q8VI40 Fam174a-201ENSMUST00000059975 2112 ntAPPRIS P1 TSL 1 (best) BASIC24.29■■□□□ 1.48
Trim60Q8VI40 Mospd3-201ENSMUST00000037620 1456 ntAPPRIS P1 TSL 1 (best) BASIC24.29■■□□□ 1.48
Trim60Q8VI40 Cadps-201ENSMUST00000067491 5421 ntAPPRIS P4 TSL 1 (best) BASIC24.29■■□□□ 1.48
Trim60Q8VI40 Qk-202ENSMUST00000097414 4658 ntAPPRIS P1 TSL 1 (best) BASIC24.29■■□□□ 1.48
Trim60Q8VI40 Hrk-201ENSMUST00000054836 5382 ntAPPRIS P1 TSL 1 (best) BASIC24.29■■□□□ 1.48
Trim60Q8VI40 A530058N18Rik-203ENSMUST00000135729 1405 ntTSL 1 (best) BASIC24.28■■□□□ 1.48
Trim60Q8VI40 1810026B05Rik-202ENSMUST00000184554 782 ntTSL 3 BASIC24.28■■□□□ 1.48
Trim60Q8VI40 Ildr2-206ENSMUST00000194964 2467 ntAPPRIS ALT2 TSL 1 (best) BASIC24.28■■□□□ 1.48
Trim60Q8VI40 Pom121-201ENSMUST00000111171 5580 ntAPPRIS P1 TSL 1 (best) BASIC24.28■■□□□ 1.48
Trim60Q8VI40 Map3k10-204ENSMUST00000138243 1621 ntTSL 1 (best) BASIC24.28■■□□□ 1.48
Trim60Q8VI40 Dlx6os2-201ENSMUST00000178206 1354 ntBASIC24.28■■□□□ 1.48
Trim60Q8VI40 Atp5a1-202ENSMUST00000114748 2674 ntTSL 1 (best) BASIC24.28■■□□□ 1.48
Trim60Q8VI40 Sos2-201ENSMUST00000035773 5607 ntAPPRIS P2 TSL 5 BASIC24.26■■□□□ 1.47
Trim60Q8VI40 Hdac2-201ENSMUST00000019911 2005 ntAPPRIS P1 TSL 1 (best) BASIC24.25■■□□□ 1.47
Trim60Q8VI40 Hoxd9-201ENSMUST00000059272 2136 ntAPPRIS P1 TSL 1 (best) BASIC24.25■■□□□ 1.47
Trim60Q8VI40 1110008F13Rik-201ENSMUST00000029165 1045 ntAPPRIS P1 TSL 1 (best) BASIC24.24■■□□□ 1.47
Trim60Q8VI40 Cdc42bpg-201ENSMUST00000025681 5995 ntAPPRIS P1 TSL 5 BASIC24.24■■□□□ 1.47
Trim60Q8VI40 4931440P22Rik-201ENSMUST00000099076 1786 ntTSL 1 (best) BASIC24.24■■□□□ 1.47
Trim60Q8VI40 Slc25a33-201ENSMUST00000105686 1887 ntAPPRIS P1 TSL 1 (best) BASIC24.24■■□□□ 1.47
Trim60Q8VI40 Tead1-203ENSMUST00000084705 2543 ntAPPRIS ALT1 TSL 1 (best) BASIC24.23■■□□□ 1.47
Trim60Q8VI40 1700069B07Rik-202ENSMUST00000191155 939 ntBASIC24.23■■□□□ 1.47
Trim60Q8VI40 Aspscr1-202ENSMUST00000103016 1689 ntTSL 5 BASIC24.23■■□□□ 1.47
Trim60Q8VI40 Tmpo-205ENSMUST00000105293 1842 ntTSL 1 (best) BASIC24.23■■□□□ 1.47
Trim60Q8VI40 Arf6-201ENSMUST00000050063 1534 ntAPPRIS P1 TSL 1 (best) BASIC24.21■■□□□ 1.47
Trim60Q8VI40 Rpsa-204ENSMUST00000217317 1599 ntAPPRIS P1 TSL 1 (best) BASIC24.2■■□□□ 1.47
Trim60Q8VI40 Pde8b-204ENSMUST00000159608 2370 ntTSL 5 BASIC24.2■■□□□ 1.46
Trim60Q8VI40 Pura-201ENSMUST00000051301 3145 ntAPPRIS P1 TSL 1 (best) BASIC24.19■■□□□ 1.46
Trim60Q8VI40 Tirap-205ENSMUST00000176685 1783 ntAPPRIS P1 TSL 1 (best) BASIC24.19■■□□□ 1.46
Trim60Q8VI40 Gpr137c-205ENSMUST00000227009 771 ntAPPRIS ALT2 BASIC24.19■■□□□ 1.46
Trim60Q8VI40 Tdp2-201ENSMUST00000038039 1957 ntAPPRIS P1 TSL 1 (best) BASIC24.19■■□□□ 1.46
Trim60Q8VI40 2410017I17Rik-201ENSMUST00000056774 1509 ntTSL 5 BASIC24.19■■□□□ 1.46
Trim60Q8VI40 Cadm1-209ENSMUST00000152459 1784 ntTSL 1 (best) BASIC24.19■■□□□ 1.46
Trim60Q8VI40 Ppp1r3e-201ENSMUST00000168622 1852 ntAPPRIS P1 TSL 5 BASIC24.18■■□□□ 1.46
Trim60Q8VI40 Zdhhc2-202ENSMUST00000128166 1547 ntAPPRIS P1 TSL 1 (best) BASIC24.18■■□□□ 1.46
Trim60Q8VI40 Pex10-201ENSMUST00000103180 1688 ntAPPRIS P1 TSL 1 (best) BASIC24.18■■□□□ 1.46
Trim60Q8VI40 H2afy-202ENSMUST00000045788 1933 ntTSL 1 (best) BASIC24.18■■□□□ 1.46
Trim60Q8VI40 Phox2a-201ENSMUST00000008090 1609 ntAPPRIS P1 TSL 1 (best) BASIC24.17■■□□□ 1.46
Trim60Q8VI40 Efna2-201ENSMUST00000003154 2131 ntAPPRIS P1 TSL 1 (best) BASIC24.17■■□□□ 1.46
Trim60Q8VI40 P3h4-201ENSMUST00000066489 2178 ntAPPRIS P2 TSL 1 (best) BASIC24.16■■□□□ 1.46
Trim60Q8VI40 6430548M08Rik-202ENSMUST00000108948 1762 ntTSL 1 (best) BASIC24.16■■□□□ 1.46
Trim60Q8VI40 Cys1-203ENSMUST00000156453 1732 ntAPPRIS P1 TSL 2 BASIC24.15■■□□□ 1.46
Trim60Q8VI40 Gm45855-201ENSMUST00000212546 880 ntBASIC24.15■■□□□ 1.46
Trim60Q8VI40 Deaf1-201ENSMUST00000080553 2135 ntAPPRIS P1 TSL 1 (best) BASIC24.14■■□□□ 1.46
Trim60Q8VI40 Esyt2-201ENSMUST00000100986 5560 ntAPPRIS P1 TSL 1 (best) BASIC24.14■■□□□ 1.46
Trim60Q8VI40 1190005I06Rik-201ENSMUST00000123927 844 ntAPPRIS P2 TSL 1 (best) BASIC24.14■■□□□ 1.45
Trim60Q8VI40 Gm30023-201ENSMUST00000197970 889 ntBASIC24.14■■□□□ 1.45
Trim60Q8VI40 Fam212b-202ENSMUST00000098273 1868 ntAPPRIS ALT2 TSL 1 (best) BASIC24.14■■□□□ 1.45
Trim60Q8VI40 Gm38287-201ENSMUST00000195193 2051 ntTSL 3 BASIC24.14■■□□□ 1.45
Trim60Q8VI40 St3gal2-202ENSMUST00000117534 2177 ntTSL 1 (best) BASIC24.13■■□□□ 1.45
Trim60Q8VI40 2510039O18Rik-201ENSMUST00000103232 2731 ntAPPRIS P1 TSL 1 (best) BASIC24.13■■□□□ 1.45
Trim60Q8VI40 Gm9887-201ENSMUST00000053451 624 ntAPPRIS P1 BASIC24.13■■□□□ 1.45
Trim60Q8VI40 Gm15688-201ENSMUST00000161394 2418 ntTSL 1 (best) BASIC24.13■■□□□ 1.45
Trim60Q8VI40 Bckdhb-201ENSMUST00000034801 1472 ntAPPRIS P3 TSL 1 (best) BASIC24.13■■□□□ 1.45
Trim60Q8VI40 Pard6a-205ENSMUST00000212430 1261 ntAPPRIS ALT1 TSL 1 (best) BASIC24.12■■□□□ 1.45
Trim60Q8VI40 Epop-201ENSMUST00000052281 2314 ntAPPRIS P1 BASIC24.12■■□□□ 1.45
Trim60Q8VI40 Particl-201ENSMUST00000205370 1560 ntBASIC24.12■■□□□ 1.45
Trim60Q8VI40 Gm37847-201ENSMUST00000192163 1497 ntBASIC24.11■■□□□ 1.45
Trim60Q8VI40 Gm31748-201ENSMUST00000194938 1497 ntBASIC24.11■■□□□ 1.45
Trim60Q8VI40 Ctdspl-201ENSMUST00000073109 4589 ntAPPRIS P2 TSL 1 (best) BASIC24.11■■□□□ 1.45
Trim60Q8VI40 Mapkap1-202ENSMUST00000113124 1758 ntAPPRIS ALT1 TSL 5 BASIC24.11■■□□□ 1.45
Trim60Q8VI40 Cd320-201ENSMUST00000002379 2209 ntAPPRIS P3 TSL 1 (best) BASIC24.1■■□□□ 1.45
Trim60Q8VI40 Cln6-201ENSMUST00000034776 2142 ntAPPRIS P1 TSL 1 (best) BASIC24.1■■□□□ 1.45
Trim60Q8VI40 6330403L08Rik-202ENSMUST00000187923 5522 ntBASIC24.09■■□□□ 1.45
Trim60Q8VI40 Nisch-222ENSMUST00000172142 2780 ntAPPRIS ALT2 TSL 1 (best) BASIC24.09■■□□□ 1.45
Trim60Q8VI40 1810049J17Rik-201ENSMUST00000180521 462 ntAPPRIS P1 BASIC24.09■■□□□ 1.45
Trim60Q8VI40 Dut-202ENSMUST00000082122 1020 ntTSL 1 (best) BASIC24.09■■□□□ 1.45
Trim60Q8VI40 Neurl4-201ENSMUST00000061837 5188 ntAPPRIS P3 TSL 5 BASIC24.08■■□□□ 1.45
Trim60Q8VI40 Cys1-207ENSMUST00000186602 1757 ntAPPRIS P1 TSL 1 (best) BASIC24.08■■□□□ 1.44
Trim60Q8VI40 Osbpl1a-209ENSMUST00000122175 1203 ntTSL 1 (best) BASIC24.07■■□□□ 1.44
Trim60Q8VI40 E130102H24Rik-201ENSMUST00000144604 741 ntTSL 1 (best) BASIC24.07■■□□□ 1.44
Trim60Q8VI40 B4galt2-201ENSMUST00000030266 2312 ntAPPRIS P1 TSL 1 (best) BASIC24.06■■□□□ 1.44
Trim60Q8VI40 Arhgap9-203ENSMUST00000219026 1946 ntAPPRIS P2 TSL 1 (best) BASIC24.06■■□□□ 1.44
Trim60Q8VI40 Efna3-201ENSMUST00000029673 2363 ntAPPRIS P2 TSL 1 (best) BASIC24.06■■□□□ 1.44
Trim60Q8VI40 Cadps-203ENSMUST00000112658 5458 ntAPPRIS ALT2 TSL 1 (best) BASIC24.06■■□□□ 1.44
Trim60Q8VI40 Sdccag3-202ENSMUST00000077983 1955 ntAPPRIS ALT2 TSL 1 (best) BASIC24.06■■□□□ 1.44
Trim60Q8VI40 Mthfd2l-203ENSMUST00000202781 688 ntTSL 1 (best) BASIC24.06■■□□□ 1.44
Trim60Q8VI40 Ccdc50-202ENSMUST00000096127 1096 ntTSL 1 (best) BASIC24.05■■□□□ 1.44
Trim60Q8VI40 Arx-202ENSMUST00000113947 2454 ntAPPRIS P1 TSL 1 (best) BASIC24.05■■□□□ 1.44
Trim60Q8VI40 Csrp1-201ENSMUST00000027677 1823 ntAPPRIS P1 TSL 1 (best) BASIC24.05■■□□□ 1.44
Trim60Q8VI40 Csrp1-202ENSMUST00000097561 1828 ntAPPRIS P1 TSL 1 (best) BASIC24.05■■□□□ 1.44
Trim60Q8VI40 Mypop-201ENSMUST00000059331 2173 ntAPPRIS P1 TSL 5 BASIC24.05■■□□□ 1.44
Trim60Q8VI40 Fam181b-201ENSMUST00000051179 2003 ntAPPRIS P1 BASIC24.05■■□□□ 1.44
Trim60Q8VI40 Cdkn2b-201ENSMUST00000097981 1393 ntAPPRIS P1 TSL 1 (best) BASIC24.04■■□□□ 1.44
Trim60Q8VI40 Tsen34-204ENSMUST00000108630 1779 ntTSL 1 (best) BASIC24.04■■□□□ 1.44
Trim60Q8VI40 Tfeb-202ENSMUST00000086932 2342 ntAPPRIS ALT2 TSL 1 (best) BASIC24.04■■□□□ 1.44
Trim60Q8VI40 Cdk2ap1-201ENSMUST00000031341 1315 ntAPPRIS P2 TSL 1 (best) BASIC24.04■■□□□ 1.44
Trim60Q8VI40 Slc22a17-201ENSMUST00000050772 2290 ntTSL 1 (best) BASIC24.02■■□□□ 1.44
Trim60Q8VI40 St7-205ENSMUST00000081635 2115 ntTSL 1 (best) BASIC24.02■■□□□ 1.44
Trim60Q8VI40 Dnttip1-201ENSMUST00000017443 1664 ntAPPRIS P1 TSL 1 (best) BASIC24.02■■□□□ 1.44
Trim60Q8VI40 2810002D19Rik-201ENSMUST00000152313 2040 ntTSL 1 (best) BASIC24.01■■□□□ 1.43
Trim60Q8VI40 Gltp-203ENSMUST00000112214 944 ntTSL 3 BASIC24.01■■□□□ 1.43
Trim60Q8VI40 Smarcc2-205ENSMUST00000218228 603 ntTSL 5 BASIC24.01■■□□□ 1.43
Trim60Q8VI40 Gm11613-201ENSMUST00000134427 1971 ntTSL 1 (best) BASIC24.01■■□□□ 1.43
Trim60Q8VI40 Kctd15-202ENSMUST00000108069 2407 ntAPPRIS P1 TSL 5 BASIC24.01■■□□□ 1.43
Trim60Q8VI40 Egr4-201ENSMUST00000095759 2148 ntAPPRIS P1 TSL 1 (best) BASIC24.01■■□□□ 1.43
Retrieved 100 of 76,532 protein–RNA pairs in 10.4 ms