Protein–RNA interactions for Protein: Q6PGB8

Smarca1, Probable global transcription activator SNF2L1, mousemouse

Predictions only

Length 1,046 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Smarca1Q6PGB8 Msto1-202ENSMUST00000126245 1875 ntAPPRIS P1 TSL 1 (best) BASIC26.4■■□□□ 1.82
Smarca1Q6PGB8 Nans-201ENSMUST00000030018 2179 ntAPPRIS P1 TSL 1 (best) BASIC26.4■■□□□ 1.82
Smarca1Q6PGB8 Dtnbp1-202ENSMUST00000110128 1305 ntAPPRIS ALT2 TSL 5 BASIC26.39■■□□□ 1.82
Smarca1Q6PGB8 Tnfsfm13-203ENSMUST00000180587 2235 ntAPPRIS P3 TSL 2 BASIC26.39■■□□□ 1.81
Smarca1Q6PGB8 Fam149b-202ENSMUST00000051915 1981 ntAPPRIS ALT2 TSL 5 BASIC26.38■■□□□ 1.81
Smarca1Q6PGB8 Gas7-203ENSMUST00000108681 1595 ntAPPRIS ALT2 TSL 5 BASIC26.37■■□□□ 1.81
Smarca1Q6PGB8 Tmem260-208ENSMUST00000226400 2281 ntAPPRIS ALT2 BASIC26.37■■□□□ 1.81
Smarca1Q6PGB8 Mtch1-202ENSMUST00000118366 1867 ntAPPRIS ALT2 TSL 1 (best) BASIC26.36■■□□□ 1.81
Smarca1Q6PGB8 Ei24-202ENSMUST00000163192 2309 ntAPPRIS P1 TSL 1 (best) BASIC26.36■■□□□ 1.81
Smarca1Q6PGB8 Jmy-202ENSMUST00000220513 1843 ntTSL 1 (best) BASIC26.36■■□□□ 1.81
Smarca1Q6PGB8 Cxxc4-203ENSMUST00000181904 5694 ntAPPRIS P2 TSL 5 BASIC26.36■■□□□ 1.81
Smarca1Q6PGB8 Ica1-201ENSMUST00000038403 2075 ntAPPRIS P2 TSL 1 (best) BASIC26.35■■□□□ 1.81
Smarca1Q6PGB8 Rundc3a-203ENSMUST00000107103 1822 ntTSL 5 BASIC26.35■■□□□ 1.81
Smarca1Q6PGB8 Rbmxl2-201ENSMUST00000098135 1472 ntAPPRIS P1 BASIC26.35■■□□□ 1.81
Smarca1Q6PGB8 1110065P20Rik-201ENSMUST00000106190 968 ntAPPRIS P1 TSL 2 BASIC26.34■■□□□ 1.81
Smarca1Q6PGB8 Cacfd1-203ENSMUST00000114005 1286 ntTSL 1 (best) BASIC26.33■■□□□ 1.81
Smarca1Q6PGB8 Ybx3-201ENSMUST00000032309 1853 ntAPPRIS P4 TSL 1 (best) BASIC26.33■■□□□ 1.81
Smarca1Q6PGB8 Gfra4-203ENSMUST00000110234 600 ntTSL 1 (best) BASIC26.32■■□□□ 1.8
Smarca1Q6PGB8 Gfra4-204ENSMUST00000110235 573 ntTSL 1 (best) BASIC26.32■■□□□ 1.8
Smarca1Q6PGB8 Gm28052-201ENSMUST00000150388 380 ntTSL 3 BASIC26.32■■□□□ 1.8
Smarca1Q6PGB8 Sys1-201ENSMUST00000072452 1606 ntAPPRIS P1 TSL 1 (best) BASIC26.32■■□□□ 1.8
Smarca1Q6PGB8 Gm17110-201ENSMUST00000171248 735 ntTSL 3 BASIC26.31■■□□□ 1.8
Smarca1Q6PGB8 1700084E18Rik-202ENSMUST00000205624 729 ntBASIC26.31■■□□□ 1.8
Smarca1Q6PGB8 Six3-201ENSMUST00000162695 2838 ntAPPRIS ALT2 TSL 5 BASIC26.31■■□□□ 1.8
Smarca1Q6PGB8 Fzd9-201ENSMUST00000062572 2293 ntAPPRIS P1 BASIC26.31■■□□□ 1.8
Smarca1Q6PGB8 Nelfe-201ENSMUST00000097343 1607 ntAPPRIS P1 TSL 5 BASIC26.3■■□□□ 1.8
Smarca1Q6PGB8 1810049J17Rik-201ENSMUST00000180521 462 ntAPPRIS P1 BASIC26.29■■□□□ 1.8
Smarca1Q6PGB8 Smurf1-202ENSMUST00000100461 2725 ntAPPRIS ALT1 TSL 1 (best) BASIC26.29■■□□□ 1.8
Smarca1Q6PGB8 Pcsk1n-201ENSMUST00000041096 2193 ntAPPRIS P1 TSL 1 (best) BASIC26.29■■□□□ 1.8
Smarca1Q6PGB8 Zxdc-201ENSMUST00000045740 1612 ntAPPRIS ALT2 TSL 1 (best) BASIC26.28■■□□□ 1.8
Smarca1Q6PGB8 Pon2-201ENSMUST00000057792 2409 ntAPPRIS P1 TSL 1 (best) BASIC26.27■■□□□ 1.8
Smarca1Q6PGB8 Gm19582-201ENSMUST00000187511 841 ntTSL 2 BASIC26.27■■□□□ 1.8
Smarca1Q6PGB8 Aspscr1-202ENSMUST00000103016 1689 ntTSL 5 BASIC26.26■■□□□ 1.79
Smarca1Q6PGB8 Hspb1-202ENSMUST00000111155 930 ntTSL 1 (best) BASIC26.26■■□□□ 1.79
Smarca1Q6PGB8 Gm7432-201ENSMUST00000210343 879 ntBASIC26.26■■□□□ 1.79
Smarca1Q6PGB8 Fam220a-206ENSMUST00000196487 2278 ntAPPRIS P1 TSL 1 (best) BASIC26.25■■□□□ 1.79
Smarca1Q6PGB8 Srcap-211ENSMUST00000189136 1960 ntTSL 1 (best) BASIC26.25■■□□□ 1.79
Smarca1Q6PGB8 Basp1-201ENSMUST00000058845 1855 ntAPPRIS P1 TSL 1 (best) BASIC26.25■■□□□ 1.79
Smarca1Q6PGB8 Thra-202ENSMUST00000103139 2246 ntAPPRIS P1 TSL 1 (best) BASIC26.24■■□□□ 1.79
Smarca1Q6PGB8 Pm20d2-202ENSMUST00000119167 1339 ntTSL 1 (best) BASIC26.24■■□□□ 1.79
Smarca1Q6PGB8 Ppa2-201ENSMUST00000029644 1226 ntAPPRIS P3 TSL 1 (best) BASIC26.24■■□□□ 1.79
Smarca1Q6PGB8 Ints11-202ENSMUST00000120794 1884 ntTSL 5 BASIC26.23■■□□□ 1.79
Smarca1Q6PGB8 Bcl7b-202ENSMUST00000111187 564 ntTSL 1 (best) BASIC26.23■■□□□ 1.79
Smarca1Q6PGB8 Mxd4-202ENSMUST00000119171 1160 ntTSL 1 (best) BASIC26.23■■□□□ 1.79
Smarca1Q6PGB8 Ube2i-206ENSMUST00000172618 1559 ntAPPRIS P1 TSL 1 (best) BASIC26.23■■□□□ 1.79
Smarca1Q6PGB8 Tsen34-211ENSMUST00000205287 1375 ntTSL 5 BASIC26.22■■□□□ 1.79
Smarca1Q6PGB8 Dlg1-203ENSMUST00000100001 4711 ntAPPRIS ALT2 TSL 5 BASIC26.22■■□□□ 1.79
Smarca1Q6PGB8 Zfp513-202ENSMUST00000114590 2228 ntAPPRIS P1 TSL 1 (best) BASIC26.22■■□□□ 1.79
Smarca1Q6PGB8 Gas2l1-201ENSMUST00000037146 2686 ntAPPRIS ALT2 TSL 1 (best) BASIC26.22■■□□□ 1.79
Smarca1Q6PGB8 Emid1-201ENSMUST00000062821 1947 ntAPPRIS P2 TSL 1 (best) BASIC26.22■■□□□ 1.79
Smarca1Q6PGB8 B230208H11Rik-201ENSMUST00000180529 1112 ntTSL 1 (best) BASIC26.21■■□□□ 1.79
Smarca1Q6PGB8 Ell2-205ENSMUST00000222194 434 ntTSL 3 BASIC26.21■■□□□ 1.79
Smarca1Q6PGB8 Irak1-207ENSMUST00000114360 2441 ntAPPRIS ALT2 TSL 1 (best) BASIC26.21■■□□□ 1.79
Smarca1Q6PGB8 Snta1-202ENSMUST00000109728 2131 ntAPPRIS P2 TSL 1 (best) BASIC26.21■■□□□ 1.79
Smarca1Q6PGB8 Snta1-201ENSMUST00000028991 2125 ntAPPRIS ALT2 TSL 1 (best) BASIC26.21■■□□□ 1.79
Smarca1Q6PGB8 Mapkap1-201ENSMUST00000113123 1530 ntTSL 5 BASIC26.2■■□□□ 1.79
Smarca1Q6PGB8 Flt3l-211ENSMUST00000211429 1358 ntAPPRIS ALT2 TSL 1 (best) BASIC26.2■■□□□ 1.78
Smarca1Q6PGB8 Ccnd3-205ENSMUST00000182209 1977 ntAPPRIS P1 TSL 1 (best) BASIC26.19■■□□□ 1.78
Smarca1Q6PGB8 Tmem200b-201ENSMUST00000094666 1370 ntAPPRIS P1 BASIC26.19■■□□□ 1.78
Smarca1Q6PGB8 Efcc1-202ENSMUST00000159570 2293 ntAPPRIS P2 TSL 5 BASIC26.18■■□□□ 1.78
Smarca1Q6PGB8 Snx3-203ENSMUST00000105500 753 ntTSL 5 BASIC26.18■■□□□ 1.78
Smarca1Q6PGB8 B3gat1-201ENSMUST00000115269 1665 ntTSL 1 (best) BASIC26.18■■□□□ 1.78
Smarca1Q6PGB8 D730045B01Rik-202ENSMUST00000186838 1543 ntTSL 1 (best) BASIC26.18■■□□□ 1.78
Smarca1Q6PGB8 Atp5a1-202ENSMUST00000114748 2674 ntTSL 1 (best) BASIC26.17■■□□□ 1.78
Smarca1Q6PGB8 Pate2-201ENSMUST00000098906 1690 ntAPPRIS ALT2 TSL 2 BASIC26.17■■□□□ 1.78
Smarca1Q6PGB8 E130102H24Rik-201ENSMUST00000144604 741 ntTSL 1 (best) BASIC26.16■■□□□ 1.78
Smarca1Q6PGB8 A030003K21Rik-201ENSMUST00000222600 830 ntAPPRIS P1 BASIC26.15■■□□□ 1.78
Smarca1Q6PGB8 Vdac1-202ENSMUST00000102758 2022 ntAPPRIS P1 TSL 1 (best) BASIC26.15■■□□□ 1.78
Smarca1Q6PGB8 Cited2-201ENSMUST00000038107 1979 ntAPPRIS P1 TSL 1 (best) BASIC26.15■■□□□ 1.78
Smarca1Q6PGB8 Snrpe-202ENSMUST00000164574 597 ntTSL 3 BASIC26.14■■□□□ 1.78
Smarca1Q6PGB8 Gm30023-201ENSMUST00000197970 889 ntBASIC26.13■■□□□ 1.77
Smarca1Q6PGB8 Eya2-202ENSMUST00000088132 2447 ntAPPRIS P1 TSL 1 (best) BASIC26.13■■□□□ 1.77
Smarca1Q6PGB8 Mta3-201ENSMUST00000067826 2087 ntAPPRIS P3 TSL 1 (best) BASIC26.12■■□□□ 1.77
Smarca1Q6PGB8 Otulin-201ENSMUST00000059662 1491 ntAPPRIS P1 TSL 1 (best) BASIC26.11■■□□□ 1.77
Smarca1Q6PGB8 Fank1-204ENSMUST00000209511 1392 ntTSL 5 BASIC26.11■■□□□ 1.77
Smarca1Q6PGB8 Hnrnpl-201ENSMUST00000038572 2142 ntAPPRIS P1 TSL 1 (best) BASIC26.11■■□□□ 1.77
Smarca1Q6PGB8 Lmo2-203ENSMUST00000111143 1654 ntTSL 1 (best) BASIC26.11■■□□□ 1.77
Smarca1Q6PGB8 1700003F12Rik-202ENSMUST00000109709 704 ntAPPRIS ALT2 TSL 3 BASIC26.1■■□□□ 1.77
Smarca1Q6PGB8 Rexo2-210ENSMUST00000217037 609 ntTSL 3 BASIC26.1■■□□□ 1.77
Smarca1Q6PGB8 1700003F12Rik-201ENSMUST00000045116 704 ntAPPRIS P2 TSL 1 (best) BASIC26.1■■□□□ 1.77
Smarca1Q6PGB8 AC122428.3-201ENSMUST00000215551 2290 ntBASIC26.09■■□□□ 1.77
Smarca1Q6PGB8 Lmo4-201ENSMUST00000120539 1669 ntAPPRIS P1 TSL 1 (best) BASIC26.09■■□□□ 1.77
Smarca1Q6PGB8 Wt1-209ENSMUST00000213301 1554 ntAPPRIS P2 TSL 1 (best) BASIC26.08■■□□□ 1.77
Smarca1Q6PGB8 Gm11599-201ENSMUST00000118720 878 ntBASIC26.08■■□□□ 1.77
Smarca1Q6PGB8 Cdkn2b-201ENSMUST00000097981 1393 ntAPPRIS P1 TSL 1 (best) BASIC26.07■■□□□ 1.76
Smarca1Q6PGB8 Shf-203ENSMUST00000110531 1557 ntAPPRIS P2 TSL 5 BASIC26.07■■□□□ 1.76
Smarca1Q6PGB8 Gm27021-201ENSMUST00000181333 758 ntAPPRIS P1 TSL 4 BASIC26.06■■□□□ 1.76
Smarca1Q6PGB8 Ildr2-206ENSMUST00000194964 2467 ntAPPRIS ALT2 TSL 1 (best) BASIC26.06■■□□□ 1.76
Smarca1Q6PGB8 Ccdc122-201ENSMUST00000048208 1721 ntAPPRIS P3 TSL 1 (best) BASIC26.05■■□□□ 1.76
Smarca1Q6PGB8 Mospd3-201ENSMUST00000037620 1456 ntAPPRIS P1 TSL 1 (best) BASIC26.05■■□□□ 1.76
Smarca1Q6PGB8 Pcbd2-201ENSMUST00000021958 544 ntTSL 1 (best) BASIC26.05■■□□□ 1.76
Smarca1Q6PGB8 Eci1-201ENSMUST00000024946 1091 ntAPPRIS P1 TSL 1 (best) BASIC26.05■■□□□ 1.76
Smarca1Q6PGB8 Mtor-201ENSMUST00000057580 1003 ntTSL 1 (best) BASIC26.04■■□□□ 1.76
Smarca1Q6PGB8 C2cd4b-201ENSMUST00000171652 1327 ntAPPRIS P1 TSL 1 (best) BASIC26.04■■□□□ 1.76
Smarca1Q6PGB8 Pura-201ENSMUST00000051301 3145 ntAPPRIS P1 TSL 1 (best) BASIC26.03■■□□□ 1.76
Smarca1Q6PGB8 AC158592.1-201ENSMUST00000215560 1113 ntTSL 5 BASIC26.03■■□□□ 1.76
Smarca1Q6PGB8 Map3k10-204ENSMUST00000138243 1621 ntTSL 1 (best) BASIC26.03■■□□□ 1.76
Smarca1Q6PGB8 C130046K22Rik-201ENSMUST00000129780 727 ntTSL 5 BASIC26.02■■□□□ 1.76
Smarca1Q6PGB8 Map2k7-207ENSMUST00000110999 1578 ntTSL 1 (best) BASIC26.02■■□□□ 1.76
Smarca1Q6PGB8 2310014F06Rik-201ENSMUST00000146145 1567 ntTSL 1 (best) BASIC26.01■■□□□ 1.75
Retrieved 100 of 76,532 protein–RNA pairs in 17.5 ms