Protein–RNA interactions for Protein: Q62318

Trim28, Transcription intermediary factor 1-beta, mousemouse

Predictions only

Length 834 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim28Q62318 Pate2-201ENSMUST00000098906 1690 ntAPPRIS ALT2 TSL 2 BASIC31,54■■■□□ 2,64
Trim28Q62318 Trappc6b-203ENSMUST00000217863 797 ntTSL 2 BASIC31,54■■■□□ 2,64
Trim28Q62318 Mapk1-203ENSMUST00000115731 1747 ntAPPRIS P1 TSL 1 (best) BASIC31,53■■■□□ 2,64
Trim28Q62318 Adap1-201ENSMUST00000110865 2557 ntAPPRIS P1 TSL 5 BASIC31,53■■■□□ 2,64
Trim28Q62318 D730045B01Rik-202ENSMUST00000186838 1543 ntTSL 1 (best) BASIC31,53■■■□□ 2,64
Trim28Q62318 Ssx2ip-202ENSMUST00000106149 2416 ntAPPRIS ALT2 TSL 1 (best) BASIC31,53■■■□□ 2,64
Trim28Q62318 Tceal3-202ENSMUST00000113100 1148 ntAPPRIS P1 TSL 1 (best) BASIC31,52■■■□□ 2,64
Trim28Q62318 Shf-203ENSMUST00000110531 1557 ntAPPRIS P2 TSL 5 BASIC31,49■■■□□ 2,63
Trim28Q62318 Tsen34-201ENSMUST00000038521 1365 ntAPPRIS P1 TSL 5 BASIC31,49■■■□□ 2,63
Trim28Q62318 1110008P14Rik-201ENSMUST00000048792 680 ntAPPRIS P1 TSL 1 (best) BASIC31,49■■■□□ 2,63
Trim28Q62318 Zcrb1-201ENSMUST00000076070 877 ntAPPRIS P3 TSL 1 (best) BASIC31,49■■■□□ 2,63
Trim28Q62318 Amer2-203ENSMUST00000225247 2662 ntBASIC31,48■■■□□ 2,63
Trim28Q62318 AC158592.1-201ENSMUST00000215560 1113 ntTSL 5 BASIC31,48■■■□□ 2,63
Trim28Q62318 Wdr34-201ENSMUST00000113711 1814 ntAPPRIS P1 TSL 1 (best) BASIC31,47■■■□□ 2,63
Trim28Q62318 Gsk3a-202ENSMUST00000108411 2248 ntAPPRIS ALT2 TSL 5 BASIC31,46■■■□□ 2,63
Trim28Q62318 Klhl35-201ENSMUST00000037359 1954 ntAPPRIS P1 TSL 1 (best) BASIC31,46■■■□□ 2,63
Trim28Q62318 Bcl7b-201ENSMUST00000031692 1758 ntAPPRIS P2 TSL 1 (best) BASIC31,45■■■□□ 2,62
Trim28Q62318 AC167019.3-201ENSMUST00000228225 1266 ntBASIC31,44■■■□□ 2,62
Trim28Q62318 Acvr2b-202ENSMUST00000165044 2093 ntTSL 2 BASIC31,44■■■□□ 2,62
Trim28Q62318 Gm960-202ENSMUST00000177696 2262 ntAPPRIS P2 TSL 5 BASIC31,44■■■□□ 2,62
Trim28Q62318 Sntb1-202ENSMUST00000110200 1225 ntTSL 1 (best) BASIC31,43■■■□□ 2,62
Trim28Q62318 Gm37136-201ENSMUST00000194368 194 ntBASIC31,43■■■□□ 2,62
Trim28Q62318 Mad2l2-202ENSMUST00000084129 1162 ntAPPRIS P1 TSL 1 (best) BASIC31,43■■■□□ 2,62
Trim28Q62318 Hdgf-201ENSMUST00000005017 2245 ntAPPRIS P1 TSL 1 (best) BASIC31,42■■■□□ 2,62
Trim28Q62318 Phox2a-201ENSMUST00000008090 1609 ntAPPRIS P1 TSL 1 (best) BASIC31,41■■■□□ 2,62
Trim28Q62318 Zbtb12-201ENSMUST00000052778 1858 ntAPPRIS P1 TSL 1 (best) BASIC31,4■■■□□ 2,62
Trim28Q62318 D16Ertd472e-201ENSMUST00000114218 1271 ntAPPRIS P1 TSL 5 BASIC31,4■■■□□ 2,62
Trim28Q62318 Tmpo-205ENSMUST00000105293 1842 ntTSL 1 (best) BASIC31,4■■■□□ 2,62
Trim28Q62318 Gm11175-201ENSMUST00000116172 543 ntBASIC31,39■■■□□ 2,62
Trim28Q62318 Izumo4-205ENSMUST00000218184 1196 ntAPPRIS P1 TSL 2 BASIC31,39■■■□□ 2,62
Trim28Q62318 Mypop-203ENSMUST00000131087 1951 ntAPPRIS P1 TSL 5 BASIC31,39■■■□□ 2,62
Trim28Q62318 Tmem98-201ENSMUST00000040865 1633 ntAPPRIS P1 TSL 1 (best) BASIC31,38■■■□□ 2,61
Trim28Q62318 3110021N24Rik-201ENSMUST00000178992 1812 ntAPPRIS P1 TSL 5 BASIC31,38■■■□□ 2,61
Trim28Q62318 Gm45580-201ENSMUST00000210430 889 ntTSL 5 BASIC31,38■■■□□ 2,61
Trim28Q62318 Kdm2a-203ENSMUST00000116571 2413 ntTSL 1 (best) BASIC31,36■■■□□ 2,61
Trim28Q62318 E2f5-201ENSMUST00000029069 1779 ntAPPRIS P2 TSL 1 (best) BASIC31,35■■■□□ 2,61
Trim28Q62318 Pard6a-203ENSMUST00000211888 1179 ntTSL 1 (best) BASIC31,35■■■□□ 2,61
Trim28Q62318 Tsg101-201ENSMUST00000014546 1949 ntAPPRIS P1 TSL 1 (best) BASIC31,34■■■□□ 2,61
Trim28Q62318 Fus-204ENSMUST00000121616 1102 ntTSL 1 (best) BASIC31,34■■■□□ 2,61
Trim28Q62318 Marveld2-202ENSMUST00000163163 2187 ntTSL 1 (best) BASIC31,34■■■□□ 2,61
Trim28Q62318 Serpinb6a-206ENSMUST00000167163 1654 ntAPPRIS P1 TSL 5 BASIC31,33■■■□□ 2,61
Trim28Q62318 Efhd1os-201ENSMUST00000138844 332 ntTSL 3 BASIC31,33■■■□□ 2,61
Trim28Q62318 Ccnyl1-203ENSMUST00000187170 1506 ntAPPRIS P1 TSL 5 BASIC31,33■■■□□ 2,61
Trim28Q62318 Krtap17-1-201ENSMUST00000105049 761 ntAPPRIS P1 BASIC31,32■■■□□ 2,6
Trim28Q62318 Paqr6-203ENSMUST00000147948 837 ntTSL 2 BASIC31,32■■■□□ 2,6
Trim28Q62318 Znrf1-207ENSMUST00000173506 1238 ntAPPRIS P1 TSL 2 BASIC31,32■■■□□ 2,6
Trim28Q62318 Cdc14b-207ENSMUST00000221634 1953 ntAPPRIS ALT2 TSL 1 (best) BASIC31,32■■■□□ 2,6
Trim28Q62318 Gm26917-201ENSMUST00000182520 869 ntTSL 5 BASIC31,31■■■□□ 2,6
Trim28Q62318 Zfp131-206ENSMUST00000223813 2561 ntAPPRIS P3 BASIC31,3■■■□□ 2,6
Trim28Q62318 Tmem55b-201ENSMUST00000049312 1594 ntAPPRIS ALT1 TSL 1 (best) BASIC31,3■■■□□ 2,6
Trim28Q62318 Gm16764-201ENSMUST00000138891 541 ntTSL 5 BASIC31,29■■■□□ 2,6
Trim28Q62318 Tmem189-201ENSMUST00000006587 2329 ntAPPRIS P1 TSL 1 (best) BASIC31,29■■■□□ 2,6
Trim28Q62318 Smagp-202ENSMUST00000172334 952 ntAPPRIS P1 TSL 2 BASIC31,28■■■□□ 2,6
Trim28Q62318 Rp9-201ENSMUST00000034763 1134 ntAPPRIS P2 TSL 1 (best) BASIC31,28■■■□□ 2,6
Trim28Q62318 Ccdc136-206ENSMUST00000145310 1703 ntAPPRIS ALT2 TSL 5 BASIC31,26■■■□□ 2,59
Trim28Q62318 4931440P22Rik-201ENSMUST00000099076 1786 ntTSL 1 (best) BASIC31,25■■■□□ 2,59
Trim28Q62318 Gas1-202ENSMUST00000223933 1155 ntAPPRIS P2 BASIC31,25■■■□□ 2,59
Trim28Q62318 Mrps15-201ENSMUST00000030675 937 ntAPPRIS P1 TSL 1 (best) BASIC31,25■■■□□ 2,59
Trim28Q62318 Gm6311-201ENSMUST00000073790 878 ntBASIC31,25■■■□□ 2,59
Trim28Q62318 E130218I03Rik-208ENSMUST00000144222 1729 ntAPPRIS P1 TSL 1 (best) BASIC31,24■■■□□ 2,59
Trim28Q62318 Hibadh-201ENSMUST00000031788 1825 ntAPPRIS P1 TSL 1 (best) BASIC31,21■■■□□ 2,59
Trim28Q62318 Nudt9-201ENSMUST00000031250 1488 ntAPPRIS P1 TSL 1 (best) BASIC31,21■■■□□ 2,59
Trim28Q62318 Ablim1-208ENSMUST00000111544 2231 ntTSL 5 BASIC31,2■■■□□ 2,59
Trim28Q62318 Esrra-201ENSMUST00000025906 2242 ntAPPRIS P1 TSL 1 (best) BASIC31,2■■■□□ 2,59
Trim28Q62318 Adprhl2-201ENSMUST00000102617 1672 ntAPPRIS P1 TSL 1 (best) BASIC31,2■■■□□ 2,59
Trim28Q62318 Rab26-202ENSMUST00000061764 1291 ntTSL 2 BASIC31,2■■■□□ 2,59
Trim28Q62318 Dtnb-203ENSMUST00000164578 2355 ntTSL 1 (best) BASIC31,19■■■□□ 2,58
Trim28Q62318 Cadm1-210ENSMUST00000214542 899 ntTSL 1 (best) BASIC31,17■■■□□ 2,58
Trim28Q62318 Pde6d-201ENSMUST00000027444 1159 ntAPPRIS P1 TSL 1 (best) BASIC31,16■■■□□ 2,58
Trim28Q62318 Srarp-201ENSMUST00000094544 905 ntAPPRIS P1 TSL 1 (best) BASIC31,16■■■□□ 2,58
Trim28Q62318 Dnajc19-202ENSMUST00000108195 659 ntAPPRIS P1 TSL 1 (best) BASIC31,14■■■□□ 2,58
Trim28Q62318 Mir6538-201ENSMUST00000183713 110 ntBASIC31,13■■■□□ 2,57
Trim28Q62318 AC154454.1-201ENSMUST00000225253 216 ntBASIC31,13■■■□□ 2,57
Trim28Q62318 Gm4799-201ENSMUST00000095396 657 ntBASIC31,13■■■□□ 2,57
Trim28Q62318 Gm14121-201ENSMUST00000121441 1380 ntBASIC31,13■■■□□ 2,57
Trim28Q62318 Hs3st6-201ENSMUST00000044922 1219 ntAPPRIS P1 TSL 1 (best) BASIC31,12■■■□□ 2,57
Trim28Q62318 Tbr1-202ENSMUST00000102737 1406 ntTSL 2 BASIC31,12■■■□□ 2,57
Trim28Q62318 Pex10-201ENSMUST00000103180 1688 ntAPPRIS P1 TSL 1 (best) BASIC31,12■■■□□ 2,57
Trim28Q62318 Kdf1-202ENSMUST00000105901 1699 ntAPPRIS P2 TSL 1 (best) BASIC31,11■■■□□ 2,57
Trim28Q62318 Nelfe-202ENSMUST00000165953 1381 ntAPPRIS P1 TSL 1 (best) BASIC31,11■■■□□ 2,57
Trim28Q62318 E130304I02Rik-202ENSMUST00000187873 696 ntTSL 1 (best) BASIC31,11■■■□□ 2,57
Trim28Q62318 Gm45364-201ENSMUST00000210883 159 ntBASIC31,11■■■□□ 2,57
Trim28Q62318 Ltb4r1-201ENSMUST00000057569 1394 ntAPPRIS P1 TSL 1 (best) BASIC31,09■■■□□ 2,57
Trim28Q62318 Gm13889-201ENSMUST00000099689 1386 ntBASIC31,09■■■□□ 2,57
Trim28Q62318 Cpsf4-205ENSMUST00000160629 1713 ntAPPRIS ALT1 TSL 1 (best) BASIC31,09■■■□□ 2,57
Trim28Q62318 Nt5c3-201ENSMUST00000031793 1676 ntAPPRIS P3 TSL 1 (best) BASIC31,09■■■□□ 2,57
Trim28Q62318 Mir3960-201ENSMUST00000198213 73 ntBASIC31,08■■■□□ 2,57
Trim28Q62318 B3gat1-201ENSMUST00000115269 1665 ntTSL 1 (best) BASIC31,07■■■□□ 2,56
Trim28Q62318 Klhl25-205ENSMUST00000206019 2299 ntAPPRIS P1 TSL 1 (best) BASIC31,07■■■□□ 2,56
Trim28Q62318 Ssbp4-205ENSMUST00000210369 1828 ntTSL 2 BASIC31,06■■■□□ 2,56
Trim28Q62318 Rpl38-203ENSMUST00000106599 457 ntAPPRIS P1 TSL 1 (best) BASIC31,06■■■□□ 2,56
Trim28Q62318 Dcun1d5-201ENSMUST00000034499 1122 ntTSL 1 (best) BASIC31,06■■■□□ 2,56
Trim28Q62318 A930035D04Rik-201ENSMUST00000064013 543 ntBASIC31,06■■■□□ 2,56
Trim28Q62318 Tmem192-202ENSMUST00000079896 916 ntTSL 1 (best) BASIC31,06■■■□□ 2,56
Trim28Q62318 Card19-201ENSMUST00000048946 804 ntAPPRIS P1 TSL 1 (best) BASIC31,05■■■□□ 2,56
Trim28Q62318 Fam196a-201ENSMUST00000171394 2490 ntAPPRIS P1 TSL 5 BASIC31,05■■■□□ 2,56
Trim28Q62318 Gm37847-201ENSMUST00000192163 1497 ntBASIC31,04■■■□□ 2,56
Trim28Q62318 Gm31748-201ENSMUST00000194938 1497 ntBASIC31,04■■■□□ 2,56
Trim28Q62318 B230322F03Rik-201ENSMUST00000181932 1569 ntBASIC31,04■■■□□ 2,56
Trim28Q62318 Azin2-202ENSMUST00000106068 2049 ntAPPRIS P1 TSL 5 BASIC31,03■■■□□ 2,56
Retrieved 100 of 76,532 protein–RNA pairs in 34,1 ms