Protein–RNA interactions for Protein: Q3UPR0

Shisa3, Protein shisa-3 homolog, mousemouse

Predictions only

Length 238 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Shisa3Q3UPR0 Homer3-206ENSMUST00000140212 2608 ntAPPRIS P3 TSL 1 (best) BASIC20.31■□□□□ 0.84
Shisa3Q3UPR0 6530409C15Rik-202ENSMUST00000143551 1573 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
Shisa3Q3UPR0 Smox-201ENSMUST00000028806 2270 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
Shisa3Q3UPR0 Tmem260-210ENSMUST00000227440 2222 ntAPPRIS ALT2 BASIC20.31■□□□□ 0.84
Shisa3Q3UPR0 Rnd2-201ENSMUST00000001347 1394 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
Shisa3Q3UPR0 Evl-202ENSMUST00000077735 2121 ntAPPRIS P3 TSL 1 (best) BASIC20.3■□□□□ 0.84
Shisa3Q3UPR0 Ccna1-202ENSMUST00000197238 1719 ntAPPRIS P1 TSL 5 BASIC20.3■□□□□ 0.84
Shisa3Q3UPR0 Otud5-204ENSMUST00000115667 2708 ntAPPRIS ALT2 TSL 5 BASIC20.29■□□□□ 0.84
Shisa3Q3UPR0 Irx1-201ENSMUST00000077337 2373 ntAPPRIS P2 TSL 1 (best) BASIC20.29■□□□□ 0.84
Shisa3Q3UPR0 Fbxo6-201ENSMUST00000030858 1346 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
Shisa3Q3UPR0 Suds3-201ENSMUST00000086471 2425 ntAPPRIS P3 TSL 1 (best) BASIC20.28■□□□□ 0.84
Shisa3Q3UPR0 Yrdc-201ENSMUST00000102628 1634 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
Shisa3Q3UPR0 Ip6k1-208ENSMUST00000176854 2251 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
Shisa3Q3UPR0 Nelfe-201ENSMUST00000097343 1607 ntAPPRIS P1 TSL 5 BASIC20.27■□□□□ 0.84
Shisa3Q3UPR0 Rundc3b-202ENSMUST00000115378 1891 ntAPPRIS ALT2 TSL 5 BASIC20.27■□□□□ 0.84
Shisa3Q3UPR0 Ppp1r3e-201ENSMUST00000168622 1852 ntAPPRIS P1 TSL 5 BASIC20.27■□□□□ 0.84
Shisa3Q3UPR0 Crem-227ENSMUST00000149803 1422 ntTSL 1 (best) BASIC20.27■□□□□ 0.83
Shisa3Q3UPR0 Tdp2-201ENSMUST00000038039 1957 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
Shisa3Q3UPR0 Dedd-201ENSMUST00000064950 1618 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
Shisa3Q3UPR0 Ihh-201ENSMUST00000164097 2468 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
Shisa3Q3UPR0 Ctage5-211ENSMUST00000176322 2649 ntTSL 5 BASIC20.23■□□□□ 0.83
Shisa3Q3UPR0 Spats2-201ENSMUST00000063517 3065 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
Shisa3Q3UPR0 Lsm14b-201ENSMUST00000055485 2534 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
Shisa3Q3UPR0 Suv39h2-202ENSMUST00000060618 1831 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
Shisa3Q3UPR0 Insc-208ENSMUST00000169913 2321 ntAPPRIS P1 TSL 5 BASIC20.23■□□□□ 0.83
Shisa3Q3UPR0 Ube2i-206ENSMUST00000172618 1559 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
Shisa3Q3UPR0 Trafd1-201ENSMUST00000042312 2503 ntAPPRIS P4 TSL 1 (best) BASIC20.23■□□□□ 0.83
Shisa3Q3UPR0 Tmpo-205ENSMUST00000105293 1842 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
Shisa3Q3UPR0 Micu2-201ENSMUST00000022543 2329 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
Shisa3Q3UPR0 1190005I06Rik-201ENSMUST00000123927 844 ntAPPRIS P2 TSL 1 (best) BASIC20.22■□□□□ 0.83
Shisa3Q3UPR0 Macrod1-201ENSMUST00000040261 1274 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
Shisa3Q3UPR0 Ctage5-203ENSMUST00000170992 2785 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
Shisa3Q3UPR0 Arhgap9-203ENSMUST00000219026 1946 ntAPPRIS P2 TSL 1 (best) BASIC20.21■□□□□ 0.83
Shisa3Q3UPR0 E130309D02Rik-201ENSMUST00000046418 2208 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
Shisa3Q3UPR0 Znrf3-202ENSMUST00000143746 1022 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
Shisa3Q3UPR0 Egr3-201ENSMUST00000035908 1509 ntAPPRIS ALT1 TSL 1 (best) BASIC20.21■□□□□ 0.83
Shisa3Q3UPR0 Dync1i1-203ENSMUST00000115556 2718 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
Shisa3Q3UPR0 Kmt5a-202ENSMUST00000100709 1425 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
Shisa3Q3UPR0 Hoxc8-201ENSMUST00000001703 1868 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
Shisa3Q3UPR0 Gm527-201ENSMUST00000058135 1468 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
Shisa3Q3UPR0 Tmpo-204ENSMUST00000099355 1953 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
Shisa3Q3UPR0 Habp4-201ENSMUST00000021929 2564 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
Shisa3Q3UPR0 Tspan33-202ENSMUST00000115250 1977 ntAPPRIS ALT1 TSL 1 (best) BASIC20.19■□□□□ 0.82
Shisa3Q3UPR0 Klhl22-201ENSMUST00000117192 2754 ntTSL 5 BASIC20.19■□□□□ 0.82
Shisa3Q3UPR0 Hrh3-208ENSMUST00000171736 906 ntTSL 5 BASIC20.19■□□□□ 0.82
Shisa3Q3UPR0 5730480H06Rik-201ENSMUST00000030968 1616 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
Shisa3Q3UPR0 Txnrd1-208ENSMUST00000219962 2297 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
Shisa3Q3UPR0 Iffo2-203ENSMUST00000174078 5716 ntAPPRIS ALT2 TSL 1 (best) BASIC20.18■□□□□ 0.82
Shisa3Q3UPR0 Pcgf5-201ENSMUST00000062389 1566 ntTSL 5 BASIC20.18■□□□□ 0.82
Shisa3Q3UPR0 Cabp1-204ENSMUST00000112113 1621 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
Shisa3Q3UPR0 Hdac1-201ENSMUST00000102597 2038 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
Shisa3Q3UPR0 A530058N18Rik-208ENSMUST00000131299 1387 ntTSL 2 BASIC20.18■□□□□ 0.82
Shisa3Q3UPR0 Tsen34-204ENSMUST00000108630 1779 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
Shisa3Q3UPR0 Cys1-207ENSMUST00000186602 1757 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
Shisa3Q3UPR0 D730045B01Rik-202ENSMUST00000186838 1543 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
Shisa3Q3UPR0 Impdh1-201ENSMUST00000078155 2437 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
Shisa3Q3UPR0 Pate2-201ENSMUST00000098906 1690 ntAPPRIS ALT2 TSL 2 BASIC20.17■□□□□ 0.82
Shisa3Q3UPR0 Gm45855-201ENSMUST00000212546 880 ntBASIC20.17■□□□□ 0.82
Shisa3Q3UPR0 Itpka-201ENSMUST00000028758 1818 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
Shisa3Q3UPR0 St6galnac6-205ENSMUST00000113290 2402 ntAPPRIS ALT1 TSL 5 BASIC20.17■□□□□ 0.82
Shisa3Q3UPR0 March2-205ENSMUST00000173015 1418 ntTSL 3 BASIC20.17■□□□□ 0.82
Shisa3Q3UPR0 C1ql1-201ENSMUST00000057849 1473 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
Shisa3Q3UPR0 Capns1-201ENSMUST00000001845 1600 ntAPPRIS P2 TSL 5 BASIC20.16■□□□□ 0.82
Shisa3Q3UPR0 D130020L05Rik-201ENSMUST00000180800 2431 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
Shisa3Q3UPR0 Dvl1-208ENSMUST00000168552 2776 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
Shisa3Q3UPR0 Junos-204ENSMUST00000128094 830 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
Shisa3Q3UPR0 BC037032-205ENSMUST00000187080 508 ntTSL 5 BASIC20.16■□□□□ 0.82
Shisa3Q3UPR0 Gm9397-201ENSMUST00000200125 605 ntBASIC20.16■□□□□ 0.82
Shisa3Q3UPR0 Ptpn4-203ENSMUST00000163435 2365 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
Shisa3Q3UPR0 Ccdc9-201ENSMUST00000041010 2379 ntAPPRIS P3 TSL 1 (best) BASIC20.16■□□□□ 0.82
Shisa3Q3UPR0 Trim3-202ENSMUST00000106789 2841 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
Shisa3Q3UPR0 Csrp1-201ENSMUST00000027677 1823 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
Shisa3Q3UPR0 Csrp1-202ENSMUST00000097561 1828 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
Shisa3Q3UPR0 Basp1-201ENSMUST00000058845 1855 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
Shisa3Q3UPR0 Hoxb3os-202ENSMUST00000147410 1945 ntTSL 5 BASIC20.15■□□□□ 0.82
Shisa3Q3UPR0 Cadm1-209ENSMUST00000152459 1784 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
Shisa3Q3UPR0 Hccs-201ENSMUST00000033717 2320 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
Shisa3Q3UPR0 Shb-201ENSMUST00000061986 2244 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
Shisa3Q3UPR0 Armc10-201ENSMUST00000072896 2221 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
Shisa3Q3UPR0 Ltk-201ENSMUST00000028759 3080 ntAPPRIS P4 TSL 1 (best) BASIC20.14■□□□□ 0.81
Shisa3Q3UPR0 Pde8b-204ENSMUST00000159608 2370 ntTSL 5 BASIC20.14■□□□□ 0.81
Shisa3Q3UPR0 Spsb3-205ENSMUST00000120943 1949 ntAPPRIS ALT2 TSL 1 (best) BASIC20.14■□□□□ 0.81
Shisa3Q3UPR0 Snx3-201ENSMUST00000019939 1401 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
Shisa3Q3UPR0 Tmem143-201ENSMUST00000069772 2297 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
Shisa3Q3UPR0 Strn3-202ENSMUST00000169503 2791 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
Shisa3Q3UPR0 Foxo6-201ENSMUST00000102656 2615 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
Shisa3Q3UPR0 2810002D19Rik-201ENSMUST00000152313 2040 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
Shisa3Q3UPR0 Qrich1-209ENSMUST00000194385 975 ntTSL 2 BASIC20.12■□□□□ 0.81
Shisa3Q3UPR0 E2f5-202ENSMUST00000165922 1751 ntAPPRIS ALT2 TSL 5 BASIC20.12■□□□□ 0.81
Shisa3Q3UPR0 Zdhhc2-205ENSMUST00000167766 1759 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
Shisa3Q3UPR0 4931440P22Rik-201ENSMUST00000099076 1786 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
Shisa3Q3UPR0 Msl2-202ENSMUST00000189616 2612 ntTSL 5 BASIC20.12■□□□□ 0.81
Shisa3Q3UPR0 Ube2q1-201ENSMUST00000038356 3077 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
Shisa3Q3UPR0 Slc17a7-201ENSMUST00000085374 2915 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
Shisa3Q3UPR0 Tcf4-246ENSMUST00000202116 2986 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
Shisa3Q3UPR0 Mapkap1-202ENSMUST00000113124 1758 ntAPPRIS ALT1 TSL 5 BASIC20.11■□□□□ 0.81
Shisa3Q3UPR0 H3f3aos-201ENSMUST00000097448 2905 ntBASIC20.11■□□□□ 0.81
Shisa3Q3UPR0 Pgbd5-204ENSMUST00000140012 3222 ntAPPRIS ALT2 TSL 5 BASIC20.1■□□□□ 0.81
Shisa3Q3UPR0 1110008F13Rik-201ENSMUST00000029165 1045 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
Shisa3Q3UPR0 Nrtn-201ENSMUST00000044752 1023 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
Retrieved 100 of 76,532 protein–RNA pairs in 25.5 ms