Protein–RNA interactions for Protein: P09022

Hoxa1, Homeobox protein Hox-A1, mousemouse

Predictions only

Length 331 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hoxa1P09022 Pate2-201ENSMUST00000098906 1690 ntAPPRIS ALT2 TSL 2 BASIC19.07■□□□□ 0.64
Hoxa1P09022 D730045B01Rik-202ENSMUST00000186838 1543 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
Hoxa1P09022 Cpe-201ENSMUST00000048967 2117 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
Hoxa1P09022 Gltp-203ENSMUST00000112214 944 ntTSL 3 BASIC19.06■□□□□ 0.64
Hoxa1P09022 Jmy-202ENSMUST00000220513 1843 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
Hoxa1P09022 AC153890.1-201ENSMUST00000220021 2469 ntBASIC19.06■□□□□ 0.64
Hoxa1P09022 Rnf115-201ENSMUST00000029740 2209 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
Hoxa1P09022 Lmo2-203ENSMUST00000111143 1654 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
Hoxa1P09022 Gm45855-201ENSMUST00000212546 880 ntBASIC19.05■□□□□ 0.64
Hoxa1P09022 Dcbld2-201ENSMUST00000046663 6561 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
Hoxa1P09022 B3gat1-201ENSMUST00000115269 1665 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
Hoxa1P09022 Thra-202ENSMUST00000103139 2246 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
Hoxa1P09022 Kras-201ENSMUST00000032399 4678 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
Hoxa1P09022 5031425E22Rik-201ENSMUST00000101522 2110 ntBASIC19.04■□□□□ 0.64
Hoxa1P09022 Fam220a-205ENSMUST00000169329 2331 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
Hoxa1P09022 Ints11-202ENSMUST00000120794 1884 ntTSL 5 BASIC19.03■□□□□ 0.64
Hoxa1P09022 Kcnq5-206ENSMUST00000173404 2775 ntAPPRIS ALT2 TSL 5 BASIC19.03■□□□□ 0.64
Hoxa1P09022 Pcsk1n-201ENSMUST00000041096 2193 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
Hoxa1P09022 Mpp6-209ENSMUST00000204545 2418 ntAPPRIS P1 TSL 5 BASIC19.03■□□□□ 0.64
Hoxa1P09022 Clk2-202ENSMUST00000121212 2154 ntAPPRIS P3 TSL 1 (best) BASIC19.02■□□□□ 0.64
Hoxa1P09022 Lmo4-201ENSMUST00000120539 1669 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
Hoxa1P09022 Lrrc4b-201ENSMUST00000058667 2728 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
Hoxa1P09022 Zxdc-201ENSMUST00000045740 1612 ntAPPRIS ALT2 TSL 1 (best) BASIC19.02■□□□□ 0.64
Hoxa1P09022 Gm960-204ENSMUST00000225896 2202 ntAPPRIS ALT2 BASIC19.02■□□□□ 0.64
Hoxa1P09022 Ei24-202ENSMUST00000163192 2309 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
Hoxa1P09022 Srcap-211ENSMUST00000189136 1960 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
Hoxa1P09022 Nans-201ENSMUST00000030018 2179 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
Hoxa1P09022 Otud5-205ENSMUST00000115668 2543 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
Hoxa1P09022 Mta3-201ENSMUST00000067826 2087 ntAPPRIS P3 TSL 1 (best) BASIC19.01■□□□□ 0.63
Hoxa1P09022 A530058N18Rik-203ENSMUST00000135729 1405 ntTSL 1 (best) BASIC19■□□□□ 0.63
Hoxa1P09022 Kat2b-201ENSMUST00000000724 4653 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
Hoxa1P09022 Tmem260-208ENSMUST00000226400 2281 ntAPPRIS ALT2 BASIC18.99■□□□□ 0.63
Hoxa1P09022 Nhlrc1-201ENSMUST00000052747 2294 ntAPPRIS P1 BASIC18.99■□□□□ 0.63
Hoxa1P09022 Arhgdia-201ENSMUST00000067936 2150 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
Hoxa1P09022 Tnfsfm13-203ENSMUST00000180587 2235 ntAPPRIS P3 TSL 2 BASIC18.98■□□□□ 0.63
Hoxa1P09022 Shf-203ENSMUST00000110531 1557 ntAPPRIS P2 TSL 5 BASIC18.98■□□□□ 0.63
Hoxa1P09022 Pax1-201ENSMUST00000109968 2643 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
Hoxa1P09022 Mthfd2l-203ENSMUST00000202781 688 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
Hoxa1P09022 Rpsa-204ENSMUST00000217317 1599 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
Hoxa1P09022 Ica1-201ENSMUST00000038403 2075 ntAPPRIS P2 TSL 1 (best) BASIC18.97■□□□□ 0.63
Hoxa1P09022 Hexdc-201ENSMUST00000038831 2378 ntAPPRIS ALT2 TSL 5 BASIC18.97■□□□□ 0.63
Hoxa1P09022 Hmx3-201ENSMUST00000046093 1457 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
Hoxa1P09022 Gpr12-201ENSMUST00000036211 2219 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
Hoxa1P09022 Gm45580-201ENSMUST00000210430 889 ntTSL 5 BASIC18.96■□□□□ 0.63
Hoxa1P09022 Vdac1-202ENSMUST00000102758 2022 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
Hoxa1P09022 Fzd9-201ENSMUST00000062572 2293 ntAPPRIS P1 BASIC18.95■□□□□ 0.62
Hoxa1P09022 Acot5-201ENSMUST00000046422 1518 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
Hoxa1P09022 Gna13-202ENSMUST00000106702 914 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
Hoxa1P09022 Emid1-201ENSMUST00000062821 1947 ntAPPRIS P2 TSL 1 (best) BASIC18.95■□□□□ 0.62
Hoxa1P09022 Wwc1-201ENSMUST00000018993 4531 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
Hoxa1P09022 Neurl4-211ENSMUST00000177138 4886 ntAPPRIS ALT2 TSL 1 (best) BASIC18.95■□□□□ 0.62
Hoxa1P09022 Cdk2ap1-201ENSMUST00000031341 1315 ntAPPRIS P2 TSL 1 (best) BASIC18.95■□□□□ 0.62
Hoxa1P09022 Wt1-209ENSMUST00000213301 1554 ntAPPRIS P2 TSL 1 (best) BASIC18.94■□□□□ 0.62
Hoxa1P09022 Six3-201ENSMUST00000162695 2838 ntAPPRIS ALT2 TSL 5 BASIC18.94■□□□□ 0.62
Hoxa1P09022 C2cd4d-201ENSMUST00000169433 1321 ntAPPRIS P1 TSL 3 BASIC18.94■□□□□ 0.62
Hoxa1P09022 Man1a-201ENSMUST00000003843 5137 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
Hoxa1P09022 Rab21-201ENSMUST00000020343 4602 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
Hoxa1P09022 Fam168b-203ENSMUST00000167518 5058 ntTSL 5 BASIC18.93■□□□□ 0.62
Hoxa1P09022 Gpr137c-205ENSMUST00000227009 771 ntAPPRIS ALT2 BASIC18.93■□□□□ 0.62
Hoxa1P09022 2310014F06Rik-201ENSMUST00000146145 1567 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
Hoxa1P09022 Hnrnpl-201ENSMUST00000038572 2142 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
Hoxa1P09022 Dut-202ENSMUST00000082122 1020 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
Hoxa1P09022 Eml4-202ENSMUST00000096766 5445 ntAPPRIS ALT2 TSL 1 (best) BASIC18.91■□□□□ 0.62
Hoxa1P09022 Mospd3-201ENSMUST00000037620 1456 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
Hoxa1P09022 Cited2-201ENSMUST00000038107 1979 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
Hoxa1P09022 Agap3-201ENSMUST00000024123 3207 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
Hoxa1P09022 Crip2-201ENSMUST00000084882 1439 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
Hoxa1P09022 Frmd4a-201ENSMUST00000075767 6761 ntAPPRIS ALT2 TSL 1 (best) BASIC18.89■□□□□ 0.62
Hoxa1P09022 Aspscr1-202ENSMUST00000103016 1689 ntTSL 5 BASIC18.89■□□□□ 0.61
Hoxa1P09022 Dtnbp1-201ENSMUST00000072329 1362 ntAPPRIS P2 TSL 1 (best) BASIC18.89■□□□□ 0.61
Hoxa1P09022 Bckdhb-201ENSMUST00000034801 1472 ntAPPRIS P3 TSL 1 (best) BASIC18.89■□□□□ 0.61
Hoxa1P09022 Arf6-201ENSMUST00000050063 1534 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
Hoxa1P09022 E130218I03Rik-208ENSMUST00000144222 1729 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
Hoxa1P09022 Efcc1-202ENSMUST00000159570 2293 ntAPPRIS P2 TSL 5 BASIC18.88■□□□□ 0.61
Hoxa1P09022 Ppp1r3e-201ENSMUST00000168622 1852 ntAPPRIS P1 TSL 5 BASIC18.88■□□□□ 0.61
Hoxa1P09022 AC122428.3-201ENSMUST00000215551 2290 ntBASIC18.88■□□□□ 0.61
Hoxa1P09022 Osbpl1a-209ENSMUST00000122175 1203 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
Hoxa1P09022 Fam220a-206ENSMUST00000196487 2278 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
Hoxa1P09022 Gm30023-201ENSMUST00000197970 889 ntBASIC18.87■□□□□ 0.61
Hoxa1P09022 Tdp2-201ENSMUST00000038039 1957 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
Hoxa1P09022 Dennd5a-201ENSMUST00000080437 5004 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
Hoxa1P09022 Ppp4r2-201ENSMUST00000063854 4874 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
Hoxa1P09022 Hoxb3os-202ENSMUST00000147410 1945 ntTSL 5 BASIC18.86■□□□□ 0.61
Hoxa1P09022 Smarcc2-205ENSMUST00000218228 603 ntTSL 5 BASIC18.86■□□□□ 0.61
Hoxa1P09022 Cys1-203ENSMUST00000156453 1732 ntAPPRIS P1 TSL 2 BASIC18.86■□□□□ 0.61
Hoxa1P09022 Map3k10-204ENSMUST00000138243 1621 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
Hoxa1P09022 Gm9887-201ENSMUST00000053451 624 ntAPPRIS P1 BASIC18.85■□□□□ 0.61
Hoxa1P09022 Gas2l1-201ENSMUST00000037146 2686 ntAPPRIS ALT2 TSL 1 (best) BASIC18.85■□□□□ 0.61
Hoxa1P09022 Zdhhc2-202ENSMUST00000128166 1547 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
Hoxa1P09022 Tmpo-205ENSMUST00000105293 1842 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
Hoxa1P09022 Suv39h2-202ENSMUST00000060618 1831 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
Hoxa1P09022 Mprip-202ENSMUST00000072031 8718 ntAPPRIS P4 TSL 1 (best) BASIC18.84■□□□□ 0.61
Hoxa1P09022 Cpsf4-205ENSMUST00000160629 1713 ntAPPRIS ALT1 TSL 1 (best) BASIC18.84■□□□□ 0.61
Hoxa1P09022 Mxra7-202ENSMUST00000047715 757 ntAPPRIS ALT2 TSL 1 (best) BASIC18.84■□□□□ 0.61
Hoxa1P09022 Arx-202ENSMUST00000113947 2454 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
Hoxa1P09022 2410017I17Rik-201ENSMUST00000056774 1509 ntTSL 5 BASIC18.84■□□□□ 0.61
Hoxa1P09022 Crls1-201ENSMUST00000028835 1924 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
Hoxa1P09022 Pon2-201ENSMUST00000057792 2409 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
Hoxa1P09022 Tbc1d24-201ENSMUST00000024931 4894 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
Hoxa1P09022 Arhgef26-201ENSMUST00000079300 5638 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
Retrieved 100 of 76,532 protein–RNA pairs in 95.4 ms