Protein–RNA interactions for Protein: A0A075B6C2

Trav13-4-dv7, T cell receptor alpha variable 13-4-DV7 (Fragment), mousemouse

Predictions only

Length 110 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trav13-4-dv7A0A075B6C2 Klhl2-205ENSMUST00000210166 5126 ntAPPRIS ALT2 TSL 1 (best) BASIC16.08■□□□□ 0.17
Trav13-4-dv7A0A075B6C2 Syndig1l-201ENSMUST00000095550 2524 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.17
Trav13-4-dv7A0A075B6C2 Foxd2-201ENSMUST00000068654 2592 ntAPPRIS P1 BASIC16.08■□□□□ 0.17
Trav13-4-dv7A0A075B6C2 Basp1-201ENSMUST00000058845 1855 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.17
Trav13-4-dv7A0A075B6C2 Tshz1-201ENSMUST00000060303 5656 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
Trav13-4-dv7A0A075B6C2 B3gat1-201ENSMUST00000115269 1665 ntTSL 1 (best) BASIC16.08■□□□□ 0.16
Trav13-4-dv7A0A075B6C2 Ybx3-201ENSMUST00000032309 1853 ntAPPRIS P4 TSL 1 (best) BASIC16.08■□□□□ 0.16
Trav13-4-dv7A0A075B6C2 Mypop-201ENSMUST00000059331 2173 ntAPPRIS P1 TSL 5 BASIC16.07■□□□□ 0.16
Trav13-4-dv7A0A075B6C2 Tmeff1-202ENSMUST00000123476 1224 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
Trav13-4-dv7A0A075B6C2 Amigo1-203ENSMUST00000106659 1360 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
Trav13-4-dv7A0A075B6C2 Ube2i-206ENSMUST00000172618 1559 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
Trav13-4-dv7A0A075B6C2 Nisch-201ENSMUST00000022469 5559 ntAPPRIS P3 TSL 2 BASIC16.07■□□□□ 0.16
Trav13-4-dv7A0A075B6C2 Cd320-201ENSMUST00000002379 2209 ntAPPRIS P3 TSL 1 (best) BASIC16.07■□□□□ 0.16
Trav13-4-dv7A0A075B6C2 1810026B05Rik-203ENSMUST00000184587 5738 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
Trav13-4-dv7A0A075B6C2 Nelfe-201ENSMUST00000097343 1607 ntAPPRIS P1 TSL 5 BASIC16.06■□□□□ 0.16
Trav13-4-dv7A0A075B6C2 Dazap1-202ENSMUST00000105361 1537 ntAPPRIS ALT1 TSL 1 (best) BASIC16.06■□□□□ 0.16
Trav13-4-dv7A0A075B6C2 Ccdc122-202ENSMUST00000095625 1195 ntAPPRIS ALT2 TSL 1 (best) BASIC16.06■□□□□ 0.16
Trav13-4-dv7A0A075B6C2 AI837181-202ENSMUST00000159759 1515 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
Trav13-4-dv7A0A075B6C2 B4galt2-201ENSMUST00000030266 2312 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
Trav13-4-dv7A0A075B6C2 Man1a-201ENSMUST00000003843 5137 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
Trav13-4-dv7A0A075B6C2 Pou6f1-202ENSMUST00000073837 4953 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
Trav13-4-dv7A0A075B6C2 Arhgef26-201ENSMUST00000079300 5638 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
Trav13-4-dv7A0A075B6C2 Fam60a-203ENSMUST00000111562 906 ntAPPRIS P1 TSL 3 BASIC16.04■□□□□ 0.16
Trav13-4-dv7A0A075B6C2 Smurf2-202ENSMUST00000103067 5290 ntTSL 5 BASIC16.03■□□□□ 0.16
Trav13-4-dv7A0A075B6C2 Sox1-201ENSMUST00000180353 4832 ntAPPRIS P1 BASIC16.02■□□□□ 0.16
Trav13-4-dv7A0A075B6C2 D730045B01Rik-202ENSMUST00000186838 1543 ntTSL 1 (best) BASIC16.02■□□□□ 0.15
Trav13-4-dv7A0A075B6C2 Actr3b-202ENSMUST00000128727 2031 ntTSL 1 (best) BASIC16.02■□□□□ 0.15
Trav13-4-dv7A0A075B6C2 Fgf20-201ENSMUST00000034014 1476 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.15
Trav13-4-dv7A0A075B6C2 Lmo2-203ENSMUST00000111143 1654 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
Trav13-4-dv7A0A075B6C2 Cdr2-201ENSMUST00000033169 2525 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
Trav13-4-dv7A0A075B6C2 Suds3-201ENSMUST00000086471 2425 ntAPPRIS P3 TSL 1 (best) BASIC16■□□□□ 0.15
Trav13-4-dv7A0A075B6C2 Fbxo6-201ENSMUST00000030858 1346 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
Trav13-4-dv7A0A075B6C2 Pate2-201ENSMUST00000098906 1690 ntAPPRIS ALT2 TSL 2 BASIC16■□□□□ 0.15
Trav13-4-dv7A0A075B6C2 2210008F06Rik-201ENSMUST00000180805 1082 ntTSL 1 (best) BASIC16■□□□□ 0.15
Trav13-4-dv7A0A075B6C2 Hdac2-201ENSMUST00000019911 2005 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
Trav13-4-dv7A0A075B6C2 Syndig1l-204ENSMUST00000222422 1758 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
Trav13-4-dv7A0A075B6C2 Wt1-209ENSMUST00000213301 1554 ntAPPRIS P2 TSL 1 (best) BASIC16■□□□□ 0.15
Trav13-4-dv7A0A075B6C2 Deaf1-201ENSMUST00000080553 2135 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
Trav13-4-dv7A0A075B6C2 Ier5l-201ENSMUST00000065134 2683 ntAPPRIS P1 BASIC16■□□□□ 0.15
Trav13-4-dv7A0A075B6C2 Vps37b-201ENSMUST00000040967 2522 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
Trav13-4-dv7A0A075B6C2 St3gal2-202ENSMUST00000117534 2177 ntTSL 1 (best) BASIC15.99■□□□□ 0.15
Trav13-4-dv7A0A075B6C2 CT030161.2-201ENSMUST00000218666 735 ntTSL 3 BASIC15.99■□□□□ 0.15
Trav13-4-dv7A0A075B6C2 H1f0-201ENSMUST00000180086 2287 ntAPPRIS P1 BASIC15.99■□□□□ 0.15
Trav13-4-dv7A0A075B6C2 Shf-203ENSMUST00000110531 1557 ntAPPRIS P2 TSL 5 BASIC15.99■□□□□ 0.15
Trav13-4-dv7A0A075B6C2 Ccsap-201ENSMUST00000034452 2390 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
Trav13-4-dv7A0A075B6C2 Adra1d-201ENSMUST00000103184 1899 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
Trav13-4-dv7A0A075B6C2 Fam220a-205ENSMUST00000169329 2331 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
Trav13-4-dv7A0A075B6C2 Ccnd3-205ENSMUST00000182209 1977 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
Trav13-4-dv7A0A075B6C2 Sys1-201ENSMUST00000072452 1606 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
Trav13-4-dv7A0A075B6C2 Dnpep-201ENSMUST00000066668 2488 ntAPPRIS P3 TSL 1 (best) BASIC15.98■□□□□ 0.15
Trav13-4-dv7A0A075B6C2 Gal3st1-202ENSMUST00000078757 1749 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
Trav13-4-dv7A0A075B6C2 Hoxb3os-202ENSMUST00000147410 1945 ntTSL 5 BASIC15.98■□□□□ 0.15
Trav13-4-dv7A0A075B6C2 H2afy-202ENSMUST00000045788 1933 ntTSL 1 (best) BASIC15.98■□□□□ 0.15
Trav13-4-dv7A0A075B6C2 Cpsf4-201ENSMUST00000070487 1606 ntTSL 1 (best) BASIC15.97■□□□□ 0.15
Trav13-4-dv7A0A075B6C2 Lemd3-202ENSMUST00000119944 4743 ntAPPRIS P2 TSL 1 (best) BASIC15.97■□□□□ 0.15
Trav13-4-dv7A0A075B6C2 Zmynd12-201ENSMUST00000094819 1464 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
Trav13-4-dv7A0A075B6C2 Kctd15-202ENSMUST00000108069 2407 ntAPPRIS P1 TSL 5 BASIC15.97■□□□□ 0.15
Trav13-4-dv7A0A075B6C2 Efna2-201ENSMUST00000003154 2131 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
Trav13-4-dv7A0A075B6C2 Homer3-201ENSMUST00000003669 2323 ntAPPRIS ALT1 TSL 1 (best) BASIC15.97■□□□□ 0.15
Trav13-4-dv7A0A075B6C2 Tbc1d24-201ENSMUST00000024931 4894 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
Trav13-4-dv7A0A075B6C2 Fam3c-201ENSMUST00000081288 1487 ntTSL 1 (best) BASIC15.97■□□□□ 0.15
Trav13-4-dv7A0A075B6C2 Slc16a11-201ENSMUST00000094055 1788 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
Trav13-4-dv7A0A075B6C2 1700028N14Rik-201ENSMUST00000139621 747 ntTSL 1 (best) BASIC15.96■□□□□ 0.15
Trav13-4-dv7A0A075B6C2 Epop-201ENSMUST00000052281 2314 ntAPPRIS P1 BASIC15.96■□□□□ 0.15
Trav13-4-dv7A0A075B6C2 Mta3-201ENSMUST00000067826 2087 ntAPPRIS P3 TSL 1 (best) BASIC15.96■□□□□ 0.15
Trav13-4-dv7A0A075B6C2 Arl5a-201ENSMUST00000036541 5239 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.14
Trav13-4-dv7A0A075B6C2 Lpcat4-201ENSMUST00000028554 2275 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.14
Trav13-4-dv7A0A075B6C2 Ei24-201ENSMUST00000115086 2220 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
Trav13-4-dv7A0A075B6C2 Il3ra-201ENSMUST00000090591 1614 ntAPPRIS P2 TSL 1 (best) BASIC15.95■□□□□ 0.14
Trav13-4-dv7A0A075B6C2 Ccna1-202ENSMUST00000197238 1719 ntAPPRIS P1 TSL 5 BASIC15.95■□□□□ 0.14
Trav13-4-dv7A0A075B6C2 Suv39h2-202ENSMUST00000060618 1831 ntTSL 1 (best) BASIC15.95■□□□□ 0.14
Trav13-4-dv7A0A075B6C2 Hoxd9-201ENSMUST00000059272 2136 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
Trav13-4-dv7A0A075B6C2 St7-205ENSMUST00000081635 2115 ntTSL 1 (best) BASIC15.95■□□□□ 0.14
Trav13-4-dv7A0A075B6C2 Fam212b-202ENSMUST00000098273 1868 ntAPPRIS ALT2 TSL 1 (best) BASIC15.95■□□□□ 0.14
Trav13-4-dv7A0A075B6C2 Gm10762-201ENSMUST00000099385 1133 ntAPPRIS P1 BASIC15.94■□□□□ 0.14
Trav13-4-dv7A0A075B6C2 Ppp4r2-201ENSMUST00000063854 4874 ntAPPRIS P1 TSL 1 (best) BASIC15.93■□□□□ 0.14
Trav13-4-dv7A0A075B6C2 Foxa2-202ENSMUST00000109964 2070 ntAPPRIS ALT2 TSL 1 (best) BASIC15.93■□□□□ 0.14
Trav13-4-dv7A0A075B6C2 Gm38287-201ENSMUST00000195193 2051 ntTSL 3 BASIC15.93■□□□□ 0.14
Trav13-4-dv7A0A075B6C2 Ubp1-204ENSMUST00000214095 2320 ntAPPRIS ALT1 TSL 1 (best) BASIC15.93■□□□□ 0.14
Trav13-4-dv7A0A075B6C2 Pdcd4-201ENSMUST00000025931 2330 ntAPPRIS P1 TSL 1 (best) BASIC15.93■□□□□ 0.14
Trav13-4-dv7A0A075B6C2 Eid2-201ENSMUST00000059596 1392 ntAPPRIS P1 BASIC15.93■□□□□ 0.14
Trav13-4-dv7A0A075B6C2 Eif2ak3-204ENSMUST00000162950 927 ntTSL 1 (best) BASIC15.93■□□□□ 0.14
Trav13-4-dv7A0A075B6C2 Wnt2-201ENSMUST00000010941 2255 ntAPPRIS P1 TSL 1 (best) BASIC15.93■□□□□ 0.14
Trav13-4-dv7A0A075B6C2 Tfeb-202ENSMUST00000086932 2342 ntAPPRIS ALT2 TSL 1 (best) BASIC15.93■□□□□ 0.14
Trav13-4-dv7A0A075B6C2 Dleu2-206ENSMUST00000182537 318 ntTSL 2 BASIC15.92■□□□□ 0.14
Trav13-4-dv7A0A075B6C2 Ctage5-218ENSMUST00000177162 2728 ntTSL 5 BASIC15.92■□□□□ 0.14
Trav13-4-dv7A0A075B6C2 Fam220a-204ENSMUST00000119488 2202 ntTSL 1 (best) BASIC15.91■□□□□ 0.14
Trav13-4-dv7A0A075B6C2 Fam220a-209ENSMUST00000200267 2202 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
Trav13-4-dv7A0A075B6C2 Pde8b-204ENSMUST00000159608 2370 ntTSL 5 BASIC15.91■□□□□ 0.14
Trav13-4-dv7A0A075B6C2 Gm43863-201ENSMUST00000203822 1192 ntBASIC15.91■□□□□ 0.14
Trav13-4-dv7A0A075B6C2 Pm20d2-201ENSMUST00000098181 1445 ntAPPRIS P1 TSL 5 BASIC15.91■□□□□ 0.14
Trav13-4-dv7A0A075B6C2 Tdp2-201ENSMUST00000038039 1957 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
Trav13-4-dv7A0A075B6C2 Sdccag3-202ENSMUST00000077983 1955 ntAPPRIS ALT2 TSL 1 (best) BASIC15.91■□□□□ 0.14
Trav13-4-dv7A0A075B6C2 Kcnq5-206ENSMUST00000173404 2775 ntAPPRIS ALT2 TSL 5 BASIC15.91■□□□□ 0.14
Trav13-4-dv7A0A075B6C2 Ccsap-202ENSMUST00000122421 2673 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
Trav13-4-dv7A0A075B6C2 Slc25a33-201ENSMUST00000105686 1887 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
Trav13-4-dv7A0A075B6C2 Crls1-201ENSMUST00000028835 1924 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
Trav13-4-dv7A0A075B6C2 2700081O15Rik-202ENSMUST00000159348 4989 ntAPPRIS P1 TSL 5 BASIC15.9■□□□□ 0.14
Trav13-4-dv7A0A075B6C2 Cln6-201ENSMUST00000034776 2142 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
Trav13-4-dv7A0A075B6C2 Egr4-201ENSMUST00000095759 2148 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
Retrieved 100 of 76,532 protein–RNA pairs in 67.3 ms