Protein–RNA interactions for Protein: Q9UGP4

LIMD1, LIM domain-containing protein 1, humanhuman

Predictions only

Length 676 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMD1Q9UGP4 AL389895.1-201ENST00000554127 252 ntBASIC7.61□□□□□ -1.19
LIMD1Q9UGP4 AL352979.2-201ENST00000556988 366 ntTSL 3 BASIC7.61□□□□□ -1.19
LIMD1Q9UGP4 HSPE1P3-201ENST00000559254 309 ntBASIC7.61□□□□□ -1.19
LIMD1Q9UGP4 SULT1C2P1-202ENST00000562418 459 ntBASIC7.61□□□□□ -1.19
LIMD1Q9UGP4 AC007495.2-202ENST00000564102 535 ntTSL 4 BASIC7.61□□□□□ -1.19
LIMD1Q9UGP4 AC090844.2-203ENST00000582263 632 ntTSL 5 BASIC7.61□□□□□ -1.19
LIMD1Q9UGP4 AC036176.3-201ENST00000602456 418 ntBASIC7.61□□□□□ -1.19
LIMD1Q9UGP4 AC009027.1-201ENST00000604510 479 ntBASIC7.61□□□□□ -1.19
LIMD1Q9UGP4 AL137000.1-201ENST00000610528 1244 ntBASIC7.61□□□□□ -1.19
LIMD1Q9UGP4 Metazoa_SRP.66-201ENST00000615609 282 ntBASIC7.61□□□□□ -1.19
LIMD1Q9UGP4 AC092683.2-201ENST00000619740 621 ntTSL 3 BASIC7.61□□□□□ -1.19
LIMD1Q9UGP4 AC021106.3-201ENST00000623925 531 ntBASIC7.61□□□□□ -1.19
LIMD1Q9UGP4 AC100810.6-201ENST00000638068 285 ntBASIC7.61□□□□□ -1.19
LIMD1Q9UGP4 CEACAM5-210ENST00000617332 2228 ntAPPRIS P3 TSL 1 (best) BASIC7.61□□□□□ -1.19
LIMD1Q9UGP4 WDR19-207ENST00000506503 2513 ntTSL 2 BASIC7.61□□□□□ -1.19
LIMD1Q9UGP4 GSTCD-201ENST00000360505 2154 ntAPPRIS P1 TSL 1 (best) BASIC7.61□□□□□ -1.19
LIMD1Q9UGP4 LPAR4-205ENST00000614823 2155 ntAPPRIS P1 TSL 4 BASIC7.61□□□□□ -1.19
LIMD1Q9UGP4 PIGA-216ENST00000637296 2113 ntTSL 5 BASIC7.61□□□□□ -1.19
LIMD1Q9UGP4 Z99129.4-201ENST00000624649 2435 ntBASIC7.61□□□□□ -1.19
LIMD1Q9UGP4 AC139491.2-201ENST00000515403 3632 ntTSL 1 (best) BASIC7.61□□□□□ -1.19
LIMD1Q9UGP4 DLG2-203ENST00000376104 5139 ntAPPRIS P3 TSL 1 (best) BASIC7.61□□□□□ -1.19
LIMD1Q9UGP4 TBX5-202ENST00000349716 3585 ntTSL 1 (best) BASIC7.61□□□□□ -1.19
LIMD1Q9UGP4 HDAC9-201ENST00000401921 3254 ntTSL 1 (best) BASIC7.61□□□□□ -1.19
LIMD1Q9UGP4 SCML1-203ENST00000380045 2679 ntAPPRIS ALT2 TSL 1 (best) BASIC7.61□□□□□ -1.19
LIMD1Q9UGP4 AGR2-203ENST00000419304 1778 ntAPPRIS P1 TSL 1 (best) BASIC7.61□□□□□ -1.19
LIMD1Q9UGP4 CDHR3-201ENST00000317716 3813 ntAPPRIS P3 TSL 1 (best) BASIC7.61□□□□□ -1.19
LIMD1Q9UGP4 FREM2-201ENST00000280481 16070 ntAPPRIS P1 TSL 1 (best) BASIC7.61□□□□□ -1.19
LIMD1Q9UGP4 CDY1-201ENST00000306609 2321 ntTSL 1 (best) BASIC7.61□□□□□ -1.19
LIMD1Q9UGP4 CDY1B-201ENST00000306882 2321 ntTSL 1 (best) BASIC7.61□□□□□ -1.19
LIMD1Q9UGP4 KIF2A-203ENST00000407818 2315 ntTSL 1 (best) BASIC7.61□□□□□ -1.19
LIMD1Q9UGP4 LMOD2-202ENST00000458573 2346 ntAPPRIS P1 TSL 2 BASIC7.61□□□□□ -1.19
LIMD1Q9UGP4 MAP2-203ENST00000361559 2038 ntTSL 1 (best) BASIC7.61□□□□□ -1.19
LIMD1Q9UGP4 ENPP3-201ENST00000357639 3162 ntAPPRIS P1 TSL 1 (best) BASIC7.61□□□□□ -1.19
LIMD1Q9UGP4 GPR1-AS-201ENST00000623040 3708 ntTSL 1 (best) BASIC7.61□□□□□ -1.19
LIMD1Q9UGP4 NXT2-203ENST00000372106 2562 ntAPPRIS P1 TSL 1 (best) BASIC7.61□□□□□ -1.19
LIMD1Q9UGP4 OR2H2-202ENST00000641840 3061 ntAPPRIS P1 BASIC7.6□□□□□ -1.19
LIMD1Q9UGP4 RBM41-201ENST00000372479 1662 ntAPPRIS P3 TSL 1 (best) BASIC7.6□□□□□ -1.19
LIMD1Q9UGP4 CXCR6-202ENST00000438735 2242 ntAPPRIS P1 TSL 3 BASIC7.6□□□□□ -1.19
LIMD1Q9UGP4 CCDC150P1-201ENST00000537123 2215 ntBASIC7.6□□□□□ -1.19
LIMD1Q9UGP4 CYLC2-204ENST00000612124 1817 ntAPPRIS P1 TSL 1 (best) BASIC7.6□□□□□ -1.19
LIMD1Q9UGP4 SLC12A6-201ENST00000290209 7286 ntAPPRIS P3 TSL 1 (best) BASIC7.6□□□□□ -1.19
LIMD1Q9UGP4 AC116535.1-201ENST00000499765 2335 ntTSL 2 BASIC7.6□□□□□ -1.19
LIMD1Q9UGP4 KRBOX1-202ENST00000418176 2566 ntAPPRIS P1 TSL 1 (best) BASIC7.6□□□□□ -1.19
LIMD1Q9UGP4 SLC14A1-208ENST00000586142 2846 ntAPPRIS P3 TSL 1 (best) BASIC7.6□□□□□ -1.19
LIMD1Q9UGP4 RN7SKP187-201ENST00000365536 330 ntBASIC7.6□□□□□ -1.19
LIMD1Q9UGP4 RNU1-122P-201ENST00000365538 156 ntBASIC7.6□□□□□ -1.19
LIMD1Q9UGP4 MIR606-201ENST00000384851 96 ntBASIC7.6□□□□□ -1.19
LIMD1Q9UGP4 MIR99A-201ENST00000384906 81 ntBASIC7.6□□□□□ -1.19
LIMD1Q9UGP4 RRM2B-203ENST00000395912 900 ntTSL 1 (best) BASIC7.6□□□□□ -1.19
LIMD1Q9UGP4 TXNP7-201ENST00000406296 293 ntBASIC7.6□□□□□ -1.19
LIMD1Q9UGP4 OR4K12P-201ENST00000406538 961 ntBASIC7.6□□□□□ -1.19
LIMD1Q9UGP4 AC114763.2-201ENST00000412593 826 ntTSL 2 BASIC7.6□□□□□ -1.19
LIMD1Q9UGP4 AC024619.1-202ENST00000426489 495 ntTSL 3 BASIC7.6□□□□□ -1.19
LIMD1Q9UGP4 AL138733.2-201ENST00000431947 804 ntTSL 5 BASIC7.6□□□□□ -1.19
LIMD1Q9UGP4 AC239803.1-202ENST00000432038 590 ntTSL 1 (best) BASIC7.6□□□□□ -1.19
LIMD1Q9UGP4 AL031681.1-201ENST00000443304 400 ntBASIC7.6□□□□□ -1.19
LIMD1Q9UGP4 GAPDHP14-201ENST00000450472 937 ntBASIC7.6□□□□□ -1.19
LIMD1Q9UGP4 HMGB1P7-201ENST00000450921 612 ntBASIC7.6□□□□□ -1.19
LIMD1Q9UGP4 PRPF38AP1-201ENST00000451976 933 ntBASIC7.6□□□□□ -1.19
LIMD1Q9UGP4 RPL5P12-201ENST00000477071 851 ntBASIC7.6□□□□□ -1.19
LIMD1Q9UGP4 AC011352.2-201ENST00000514574 1016 ntBASIC7.6□□□□□ -1.19
LIMD1Q9UGP4 RNU6-488P-201ENST00000515918 99 ntBASIC7.6□□□□□ -1.19
LIMD1Q9UGP4 SCARNA20.1-201ENST00000516009 138 ntBASIC7.6□□□□□ -1.19
LIMD1Q9UGP4 AC022616.6-201ENST00000520479 119 ntBASIC7.6□□□□□ -1.19
LIMD1Q9UGP4 AC116917.1-201ENST00000520558 305 ntBASIC7.6□□□□□ -1.19
LIMD1Q9UGP4 AC026991.1-201ENST00000520815 463 ntTSL 3 BASIC7.6□□□□□ -1.19
LIMD1Q9UGP4 AC113145.1-201ENST00000522408 412 ntTSL 5 BASIC7.6□□□□□ -1.19
LIMD1Q9UGP4 IGHVIII-67-4-201ENST00000524281 296 ntBASIC7.6□□□□□ -1.19
LIMD1Q9UGP4 AC103681.1-202ENST00000534342 449 ntTSL 3 BASIC7.6□□□□□ -1.19
LIMD1Q9UGP4 AL352979.3-201ENST00000553515 247 ntBASIC7.6□□□□□ -1.19
LIMD1Q9UGP4 HSPE1P2-201ENST00000554777 306 ntBASIC7.6□□□□□ -1.19
LIMD1Q9UGP4 AL121579.2-201ENST00000555466 590 ntBASIC7.6□□□□□ -1.19
LIMD1Q9UGP4 AL139317.3-202ENST00000555689 528 ntTSL 5 BASIC7.6□□□□□ -1.19
LIMD1Q9UGP4 AC009117.1-201ENST00000563948 554 ntBASIC7.6□□□□□ -1.19
LIMD1Q9UGP4 IGHV1OR15-3-201ENST00000564926 351 ntBASIC7.6□□□□□ -1.19
LIMD1Q9UGP4 AC008551.1-201ENST00000575612 405 ntTSL 5 BASIC7.6□□□□□ -1.19
LIMD1Q9UGP4 AC010271.1-201ENST00000599050 558 ntTSL 4 BASIC7.6□□□□□ -1.19
LIMD1Q9UGP4 AC005858.1-201ENST00000620193 677 ntTSL 2 BASIC7.6□□□□□ -1.19
LIMD1Q9UGP4 TEX41-293ENST00000630451 690 ntTSL 5 BASIC7.6□□□□□ -1.19
LIMD1Q9UGP4 AD000090.1-201ENST00000638356 494 ntTSL 1 (best) BASIC7.6□□□□□ -1.19
LIMD1Q9UGP4 ZNF43-205ENST00000594012 5584 ntAPPRIS ALT2 TSL 2 BASIC7.6□□□□□ -1.19
LIMD1Q9UGP4 KIAA1210-201ENST00000402510 7824 ntAPPRIS P1 TSL 5 BASIC7.6□□□□□ -1.19
LIMD1Q9UGP4 MAPK10-298ENST00000641297 3040 ntAPPRIS P2 BASIC7.6□□□□□ -1.19
LIMD1Q9UGP4 KIAA2012-204ENST00000498697 3772 ntAPPRIS ALT2 TSL 5 BASIC7.6□□□□□ -1.19
LIMD1Q9UGP4 KIDINS220-206ENST00000473731 7248 ntTSL 5 BASIC7.6□□□□□ -1.19
LIMD1Q9UGP4 OR9Q1-201ENST00000335397 2488 ntAPPRIS P1 BASIC7.6□□□□□ -1.19
LIMD1Q9UGP4 FAM13A-AS1-202ENST00000511543 2453 ntTSL 2 BASIC7.6□□□□□ -1.19
LIMD1Q9UGP4 MORF4L2-206ENST00000433176 1965 ntAPPRIS P1 TSL 2 BASIC7.6□□□□□ -1.19
LIMD1Q9UGP4 GTF2H3-201ENST00000228955 1472 ntTSL 2 BASIC7.6□□□□□ -1.19
LIMD1Q9UGP4 BRCA1-201ENST00000352993 3668 ntTSL 5 BASIC7.6□□□□□ -1.19
LIMD1Q9UGP4 MDM4-205ENST00000391947 10008 ntTSL 1 (best) BASIC7.6□□□□□ -1.19
LIMD1Q9UGP4 HSP90AA2P-201ENST00000530115 2196 ntBASIC7.6□□□□□ -1.19
LIMD1Q9UGP4 ZNF23-204ENST00000428724 1932 ntAPPRIS P3 TSL 1 (best) BASIC7.6□□□□□ -1.19
LIMD1Q9UGP4 FUT10-206ENST00000518672 3115 ntTSL 1 (best) BASIC7.6□□□□□ -1.19
LIMD1Q9UGP4 AL133243.4-201ENST00000623116 3109 ntBASIC7.6□□□□□ -1.19
LIMD1Q9UGP4 ZNF841-203ENST00000594295 3819 ntAPPRIS P1 TSL 3 BASIC7.6□□□□□ -1.19
LIMD1Q9UGP4 KCNMA1-266ENST00000639601 11920 ntAPPRIS ALT2 TSL 5 BASIC7.6□□□□□ -1.19
LIMD1Q9UGP4 NAV2-202ENST00000360655 10667 ntAPPRIS ALT2 TSL 1 (best) BASIC7.6□□□□□ -1.19
LIMD1Q9UGP4 MAPK10-281ENST00000641170 3070 ntBASIC7.6□□□□□ -1.19
LIMD1Q9UGP4 POLA1-201ENST00000379059 5440 ntAPPRIS P3 TSL 1 (best) BASIC7.6□□□□□ -1.19
Retrieved 100 of 98,524 protein–RNA pairs in 76.4 ms