Protein–RNA interactions for Protein: P78317

RNF4, E3 ubiquitin-protein ligase RNF4, humanhuman

Predictions only

Length 190 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4P78317 AC104036.1-201ENST00000523550 611 ntTSL 3 BASIC6.14□□□□□ -1.43
RNF4P78317 SOX9-AS1-208ENST00000529667 340 ntTSL 3 BASIC6.14□□□□□ -1.43
RNF4P78317 DPPA2P4-201ENST00000563717 878 ntBASIC6.14□□□□□ -1.43
RNF4P78317 MIR212-201ENST00000586026 110 ntBASIC6.14□□□□□ -1.43
RNF4P78317 AC091132.1-201ENST00000588189 547 ntTSL 5 BASIC6.14□□□□□ -1.43
RNF4P78317 AC027514.2-201ENST00000591014 637 ntTSL 3 BASIC6.14□□□□□ -1.43
RNF4P78317 AC008794.1-201ENST00000593063 560 ntTSL 4 BASIC6.14□□□□□ -1.43
RNF4P78317 AL022154.1-201ENST00000604698 785 ntBASIC6.14□□□□□ -1.43
RNF4P78317 AC016727.1-205ENST00000605437 569 ntBASIC6.14□□□□□ -1.43
RNF4P78317 AC010857.1-201ENST00000606398 594 ntBASIC6.14□□□□□ -1.43
RNF4P78317 AC091965.4-201ENST00000607691 587 ntBASIC6.14□□□□□ -1.43
RNF4P78317 AC005332.6-201ENST00000613178 446 ntBASIC6.14□□□□□ -1.43
RNF4P78317 U1.34-201ENST00000618578 162 ntBASIC6.14□□□□□ -1.43
RNF4P78317 AC018816.2-201ENST00000621460 353 ntBASIC6.14□□□□□ -1.43
RNF4P78317 AC079228.1-201ENST00000624774 1049 ntBASIC6.14□□□□□ -1.43
RNF4P78317 LINC00836-201ENST00000625325 582 ntTSL 4 BASIC6.14□□□□□ -1.43
RNF4P78317 AL161457.2-202ENST00000629161 743 ntTSL 5 BASIC6.14□□□□□ -1.43
RNF4P78317 AC007603.3-201ENST00000636915 979 ntBASIC6.14□□□□□ -1.43
RNF4P78317 TTI1-202ENST00000373448 3958 ntAPPRIS P1 TSL 1 (best) BASIC6.14□□□□□ -1.43
RNF4P78317 AC107982.1-201ENST00000507171 1300 ntBASIC6.14□□□□□ -1.43
RNF4P78317 MTND4P16-201ENST00000466108 1367 ntBASIC6.14□□□□□ -1.43
RNF4P78317 OR56B1-201ENST00000317121 2075 ntAPPRIS P1 BASIC6.14□□□□□ -1.43
RNF4P78317 DCC-215ENST00000581580 3517 ntTSL 1 (best) BASIC6.14□□□□□ -1.43
RNF4P78317 ERCC6L-202ENST00000373657 4344 ntAPPRIS ALT2 TSL 2 BASIC6.14□□□□□ -1.43
RNF4P78317 AC217777.1-201ENST00000570034 1471 ntBASIC6.14□□□□□ -1.43
RNF4P78317 RGS13-204ENST00000543215 1518 ntAPPRIS P1 TSL 1 (best) BASIC6.14□□□□□ -1.43
RNF4P78317 FBXO8-205ENST00000615392 1591 ntTSL 1 (best) BASIC6.14□□□□□ -1.43
RNF4P78317 FASTKD2-201ENST00000236980 3188 ntAPPRIS P1 TSL 1 (best) BASIC6.14□□□□□ -1.43
RNF4P78317 GRIP1-202ENST00000398016 4888 ntAPPRIS P1 TSL 1 (best) BASIC6.14□□□□□ -1.43
RNF4P78317 LINC02060-201ENST00000506041 1626 ntTSL 1 (best) BASIC6.14□□□□□ -1.43
RNF4P78317 CTBS-202ENST00000370630 6600 ntAPPRIS P1 TSL 1 (best) BASIC6.14□□□□□ -1.43
RNF4P78317 GYPA-212ENST00000616983 2538 ntAPPRIS ALT2 TSL 5 BASIC6.14□□□□□ -1.43
RNF4P78317 FRYL-202ENST00000358350 11706 ntAPPRIS P1 TSL 5 BASIC6.13□□□□□ -1.43
RNF4P78317 CUZD1-205ENST00000368904 2903 ntAPPRIS P1 TSL 1 (best) BASIC6.13□□□□□ -1.43
RNF4P78317 AC083837.1-201ENST00000565297 2994 ntBASIC6.13□□□□□ -1.43
RNF4P78317 ZNF506-201ENST00000443905 4095 ntAPPRIS P3 TSL 2 BASIC6.13□□□□□ -1.43
RNF4P78317 GTF2IP4-201ENST00000453092 2054 ntBASIC6.13□□□□□ -1.43
RNF4P78317 XRCC5-201ENST00000392132 3428 ntAPPRIS P1 TSL 1 (best) BASIC6.13□□□□□ -1.43
RNF4P78317 ARGFX-201ENST00000334384 992 ntAPPRIS P1 TSL 3 BASIC6.13□□□□□ -1.43
RNF4P78317 ZNF600-201ENST00000338230 3829 ntAPPRIS P1 TSL 1 (best) BASIC6.13□□□□□ -1.43
RNF4P78317 RNU6-433P-201ENST00000363216 104 ntBASIC6.13□□□□□ -1.43
RNF4P78317 RNU6-1066P-201ENST00000363573 105 ntBASIC6.13□□□□□ -1.43
RNF4P78317 MAPK8-202ENST00000374174 739 ntTSL 3 BASIC6.13□□□□□ -1.43
RNF4P78317 RNU5A-6P-201ENST00000384136 116 ntBASIC6.13□□□□□ -1.43
RNF4P78317 AC233728.1-201ENST00000418049 218 ntTSL 5 BASIC6.13□□□□□ -1.43
RNF4P78317 AC106900.1-201ENST00000418620 456 ntTSL 5 BASIC6.13□□□□□ -1.43
RNF4P78317 AC009237.2-201ENST00000421358 284 ntBASIC6.13□□□□□ -1.43
RNF4P78317 VN1R20P-201ENST00000425215 966 ntBASIC6.13□□□□□ -1.43
RNF4P78317 AC128677.1-201ENST00000436016 442 ntBASIC6.13□□□□□ -1.43
RNF4P78317 FMO7P-201ENST00000436045 768 ntBASIC6.13□□□□□ -1.43
RNF4P78317 AL022238.1-201ENST00000442557 355 ntBASIC6.13□□□□□ -1.43
RNF4P78317 RPL7P31-201ENST00000450192 724 ntBASIC6.13□□□□□ -1.43
RNF4P78317 KF459542.1-201ENST00000450908 553 ntBASIC6.13□□□□□ -1.43
RNF4P78317 AP000302.1-201ENST00000450928 666 ntTSL 2 BASIC6.13□□□□□ -1.43
RNF4P78317 SULT1D1P-201ENST00000458020 882 ntBASIC6.13□□□□□ -1.43
RNF4P78317 FAIM-205ENST00000464668 641 ntAPPRIS P3 TSL 5 BASIC6.13□□□□□ -1.43
RNF4P78317 AC112206.1-201ENST00000468416 477 ntBASIC6.13□□□□□ -1.43
RNF4P78317 AC026254.2-201ENST00000475295 371 ntBASIC6.13□□□□□ -1.43
RNF4P78317 AP000797.1-201ENST00000478870 387 ntBASIC6.13□□□□□ -1.43
RNF4P78317 AC108078.3-201ENST00000502633 489 ntBASIC6.13□□□□□ -1.43
RNF4P78317 AC011352.3-201ENST00000505162 593 ntBASIC6.13□□□□□ -1.43
RNF4P78317 HMGB1P44-201ENST00000508597 572 ntBASIC6.13□□□□□ -1.43
RNF4P78317 AC098799.2-201ENST00000509466 868 ntBASIC6.13□□□□□ -1.43
RNF4P78317 AC027309.1-201ENST00000519976 528 ntTSL 4 BASIC6.13□□□□□ -1.43
RNF4P78317 AC087276.1-201ENST00000529659 480 ntBASIC6.13□□□□□ -1.43
RNF4P78317 FBXO3-210ENST00000532057 918 ntTSL 2 BASIC6.13□□□□□ -1.43
RNF4P78317 AL162632.2-201ENST00000553933 399 ntBASIC6.13□□□□□ -1.43
RNF4P78317 ASXL1-208ENST00000555343 1034 ntTSL 5 BASIC6.13□□□□□ -1.43
RNF4P78317 TSSK4-207ENST00000556621 896 ntTSL 1 (best) BASIC6.13□□□□□ -1.43
RNF4P78317 AC026956.1-201ENST00000558741 396 ntBASIC6.13□□□□□ -1.43
RNF4P78317 NPM1P47-201ENST00000560843 856 ntBASIC6.13□□□□□ -1.43
RNF4P78317 MIR3157-201ENST00000578688 85 ntBASIC6.13□□□□□ -1.43
RNF4P78317 MIR4433B-201ENST00000581329 102 ntBASIC6.13□□□□□ -1.43
RNF4P78317 RNASEH2B-AS1-206ENST00000601286 657 ntTSL 5 BASIC6.13□□□□□ -1.43
RNF4P78317 ADPRM-204ENST00000609540 1138 ntTSL 5 BASIC6.13□□□□□ -1.43
RNF4P78317 AC244100.4-201ENST00000617747 388 ntBASIC6.13□□□□□ -1.43
RNF4P78317 AC009704.2-201ENST00000618739 483 ntBASIC6.13□□□□□ -1.43
RNF4P78317 AC012409.2-201ENST00000619812 751 ntTSL 5 BASIC6.13□□□□□ -1.43
RNF4P78317 SCRN1-210ENST00000631335 423 ntTSL 5 BASIC6.13□□□□□ -1.43
RNF4P78317 AC099654.14-201ENST00000638599 341 ntBASIC6.13□□□□□ -1.43
RNF4P78317 MKKS-204ENST00000639674 192 ntBASIC6.13□□□□□ -1.43
RNF4P78317 AL354854.1-201ENST00000455940 1363 ntBASIC6.13□□□□□ -1.43
RNF4P78317 MYO3B-202ENST00000408978 5529 ntAPPRIS P3 TSL 1 (best) BASIC6.13□□□□□ -1.43
RNF4P78317 ERVH48-1-201ENST00000447535 2790 ntTSL 1 (best) BASIC6.13□□□□□ -1.43
RNF4P78317 GABRA2-206ENST00000507460 5812 ntTSL 1 (best) BASIC6.13□□□□□ -1.43
RNF4P78317 RPL23AP82-206ENST00000480246 2987 ntTSL 1 (best) BASIC6.13□□□□□ -1.43
RNF4P78317 AC007159.1-201ENST00000566529 4706 ntBASIC6.13□□□□□ -1.43
RNF4P78317 FCGR1B-210ENST00000623603 1581 ntAPPRIS P2 TSL 1 (best) BASIC6.13□□□□□ -1.43
RNF4P78317 AC110597.1-201ENST00000562669 3176 ntBASIC6.13□□□□□ -1.43
RNF4P78317 FLRT3-202ENST00000378053 4776 ntAPPRIS P1 TSL 1 (best) BASIC6.13□□□□□ -1.43
RNF4P78317 LINC00598-211ENST00000636621 3241 ntTSL 1 (best) BASIC6.13□□□□□ -1.43
RNF4P78317 AC010401.2-201ENST00000575137 4934 ntBASIC6.13□□□□□ -1.43
RNF4P78317 TMEFF2-203ENST00000409056 3364 ntTSL 1 (best) BASIC6.13□□□□□ -1.43
RNF4P78317 NXF4-201ENST00000360035 3617 ntTSL 2 BASIC6.13□□□□□ -1.43
RNF4P78317 AMY2A-204ENST00000622339 1862 ntAPPRIS P1 TSL 5 BASIC6.13□□□□□ -1.43
RNF4P78317 AC008505.1-201ENST00000637582 2025 ntTSL 5 BASIC6.13□□□□□ -1.43
RNF4P78317 CLHC1-204ENST00000407122 2139 ntAPPRIS P1 TSL 5 BASIC6.13□□□□□ -1.43
RNF4P78317 GAS2-201ENST00000278187 2170 ntAPPRIS P1 TSL 1 (best) BASIC6.13□□□□□ -1.43
RNF4P78317 SCARB2-207ENST00000638295 4507 ntTSL 5 BASIC6.13□□□□□ -1.43
RNF4P78317 STEAP2-205ENST00000394629 2261 ntTSL 1 (best) BASIC6.13□□□□□ -1.43
Retrieved 100 of 98,524 protein–RNA pairs in 156.3 ms