Protein–RNA interactions for Protein: P34897

SHMT2, Serine hydroxymethyltransferase, mitochondrial, humanhuman

Predictions only

Length 504 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2P34897 AL031584.1-201ENST00000447169 754 ntBASIC4.79□□□□□ -1.64
SHMT2P34897 SLC25A18P1-201ENST00000449385 454 ntBASIC4.79□□□□□ -1.64
SHMT2P34897 OR52Y1P-201ENST00000452418 828 ntBASIC4.79□□□□□ -1.64
SHMT2P34897 AC093166.2-201ENST00000455969 1017 ntBASIC4.79□□□□□ -1.64
SHMT2P34897 AC104849.1-201ENST00000462623 405 ntBASIC4.79□□□□□ -1.64
SHMT2P34897 RPL7P16-201ENST00000479738 738 ntBASIC4.79□□□□□ -1.64
SHMT2P34897 RPL5P22-201ENST00000480199 884 ntBASIC4.79□□□□□ -1.64
SHMT2P34897 AC104071.1-201ENST00000505636 602 ntTSL 3 BASIC4.79□□□□□ -1.64
SHMT2P34897 AC006206.2-202ENST00000537714 648 ntTSL 5 BASIC4.79□□□□□ -1.64
SHMT2P34897 AC068775.2-201ENST00000539033 998 ntAPPRIS P1 TSL 1 (best) BASIC4.79□□□□□ -1.64
SHMT2P34897 PYM1-205ENST00000547925 499 ntTSL 3 BASIC4.79□□□□□ -1.64
SHMT2P34897 AC024909.1-201ENST00000549278 599 ntTSL 4 BASIC4.79□□□□□ -1.64
SHMT2P34897 MTND2P17-201ENST00000550281 688 ntBASIC4.79□□□□□ -1.64
SHMT2P34897 AL049875.1-201ENST00000554328 582 ntTSL 4 BASIC4.79□□□□□ -1.64
SHMT2P34897 MIR3934-201ENST00000579806 107 ntBASIC4.79□□□□□ -1.64
SHMT2P34897 AL109935.2-201ENST00000587737 395 ntTSL 5 BASIC4.79□□□□□ -1.64
SHMT2P34897 AP002884.5-201ENST00000595053 1132 ntBASIC4.79□□□□□ -1.64
SHMT2P34897 AC112211.1-201ENST00000607832 305 ntTSL 3 BASIC4.79□□□□□ -1.64
SHMT2P34897 AL445528.2-201ENST00000620582 470 ntBASIC4.79□□□□□ -1.64
SHMT2P34897 UBR5-204ENST00000518205 1931 ntTSL 5 BASIC4.79□□□□□ -1.64
SHMT2P34897 CNTN5-207ENST00000527185 4303 ntTSL 1 (best) BASIC4.79□□□□□ -1.64
SHMT2P34897 CASC8-203ENST00000502082 1420 ntTSL 1 (best) BASIC4.79□□□□□ -1.64
SHMT2P34897 CLEC1B-204ENST00000428126 3054 ntTSL 1 (best) BASIC4.78□□□□□ -1.64
SHMT2P34897 DNAJC28-202ENST00000381947 1354 ntAPPRIS P1 TSL 1 (best) BASIC4.78□□□□□ -1.64
SHMT2P34897 XKR4-201ENST00000327381 19880 ntAPPRIS P1 TSL 1 (best) BASIC4.78□□□□□ -1.64
SHMT2P34897 OR9G1-202ENST00000642097 3611 ntAPPRIS P1 BASIC4.78□□□□□ -1.64
SHMT2P34897 PDCD1LG2-201ENST00000397747 2365 ntAPPRIS P1 TSL 1 (best) BASIC4.78□□□□□ -1.64
SHMT2P34897 TGFBR1-208ENST00000550253 1538 ntTSL 2 BASIC4.78□□□□□ -1.64
SHMT2P34897 THAP12P8-201ENST00000447914 2115 ntBASIC4.78□□□□□ -1.64
SHMT2P34897 LRP6-201ENST00000261349 10020 ntAPPRIS P1 TSL 1 (best) BASIC4.78□□□□□ -1.64
SHMT2P34897 COA1-201ENST00000223336 927 ntAPPRIS P3 TSL 2 BASIC4.78□□□□□ -1.64
SHMT2P34897 OR10A5-201ENST00000299454 1054 ntAPPRIS P1 BASIC4.78□□□□□ -1.64
SHMT2P34897 MTHFD2P5-201ENST00000320415 844 ntBASIC4.78□□□□□ -1.64
SHMT2P34897 RN7SKP149-201ENST00000363008 344 ntBASIC4.78□□□□□ -1.64
SHMT2P34897 AL353740.1-201ENST00000366253 575 ntTSL 2 BASIC4.78□□□□□ -1.64
SHMT2P34897 ASXL1-203ENST00000375689 812 ntTSL 5 BASIC4.78□□□□□ -1.64
SHMT2P34897 IGKV5-2-201ENST00000390244 408 ntAPPRIS P1 BASIC4.78□□□□□ -1.64
SHMT2P34897 CCL7-202ENST00000394627 696 ntTSL 3 BASIC4.78□□□□□ -1.64
SHMT2P34897 CCL7-203ENST00000394630 687 ntTSL 1 (best) BASIC4.78□□□□□ -1.64
SHMT2P34897 RPS26P13-201ENST00000419030 330 ntBASIC4.78□□□□□ -1.64
SHMT2P34897 RPL12P43-201ENST00000420608 499 ntBASIC4.78□□□□□ -1.64
SHMT2P34897 AC004415.1-201ENST00000422697 449 ntTSL 3 BASIC4.78□□□□□ -1.64
SHMT2P34897 AC104170.2-201ENST00000424246 678 ntTSL 3 BASIC4.78□□□□□ -1.64
SHMT2P34897 OTX2P1-201ENST00000450956 354 ntBASIC4.78□□□□□ -1.64
SHMT2P34897 LINC01767-201ENST00000451914 545 ntTSL 2 BASIC4.78□□□□□ -1.64
SHMT2P34897 BIRC6-AS1-201ENST00000455572 697 ntTSL 3 BASIC4.78□□□□□ -1.64
SHMT2P34897 LINC00601-201ENST00000456514 1168 ntTSL 3 BASIC4.78□□□□□ -1.64
SHMT2P34897 SEPT14P1-201ENST00000458703 648 ntBASIC4.78□□□□□ -1.64
SHMT2P34897 RPS17P2-201ENST00000461663 408 ntBASIC4.78□□□□□ -1.64
SHMT2P34897 AC231760.1-201ENST00000498002 260 ntBASIC4.78□□□□□ -1.64
SHMT2P34897 GAPDHP56-201ENST00000506031 988 ntBASIC4.78□□□□□ -1.64
SHMT2P34897 SPINK9-202ENST00000511717 604 ntAPPRIS ALT2 TSL 5 BASIC4.78□□□□□ -1.64
SHMT2P34897 Y_RNA.719-201ENST00000517156 106 ntBASIC4.78□□□□□ -1.64
SHMT2P34897 AC079089.1-204ENST00000530194 572 ntTSL 2 BASIC4.78□□□□□ -1.64
SHMT2P34897 AC021006.3-201ENST00000530771 192 ntBASIC4.78□□□□□ -1.64
SHMT2P34897 MRE11-209ENST00000540013 1212 ntTSL 1 (best) BASIC4.78□□□□□ -1.64
SHMT2P34897 AC034102.2-201ENST00000548861 489 ntAPPRIS P1 TSL 5 BASIC4.78□□□□□ -1.64
SHMT2P34897 AC008126.1-201ENST00000549019 480 ntBASIC4.78□□□□□ -1.64
SHMT2P34897 AGGF1P9-201ENST00000561884 913 ntBASIC4.78□□□□□ -1.64
SHMT2P34897 MIR4436B2-201ENST00000581415 91 ntBASIC4.78□□□□□ -1.64
SHMT2P34897 MIR4436B1-201ENST00000583272 91 ntBASIC4.78□□□□□ -1.64
SHMT2P34897 AC092364.1-202ENST00000593824 565 ntTSL 4 BASIC4.78□□□□□ -1.64
SHMT2P34897 AC010615.3-201ENST00000597319 394 ntBASIC4.78□□□□□ -1.64
SHMT2P34897 AC104687.2-201ENST00000604442 342 ntBASIC4.78□□□□□ -1.64
SHMT2P34897 AL049539.1-201ENST00000611964 459 ntBASIC4.78□□□□□ -1.64
SHMT2P34897 MIR8069-1-201ENST00000616627 86 ntBASIC4.78□□□□□ -1.64
SHMT2P34897 MIR8069-2-201ENST00000621412 86 ntBASIC4.78□□□□□ -1.64
SHMT2P34897 TMEM30CP-203ENST00000637814 1035 ntBASIC4.78□□□□□ -1.64
SHMT2P34897 OR5H15-202ENST00000641450 1229 ntAPPRIS P1 BASIC4.78□□□□□ -1.64
SHMT2P34897 FGF13-202ENST00000315930 19519 ntAPPRIS P1 TSL 1 (best) BASIC4.78□□□□□ -1.64
SHMT2P34897 CASC1-204ENST00000395990 2417 ntAPPRIS ALT2 TSL 1 (best) BASIC4.78□□□□□ -1.64
SHMT2P34897 UBA6-AS1-203ENST00000500538 3352 ntTSL 1 (best) BASIC4.78□□□□□ -1.64
SHMT2P34897 NBPF14-206ENST00000614999 10080 ntTSL 5 BASIC4.78□□□□□ -1.64
SHMT2P34897 PIGN-217ENST00000591238 1622 ntTSL 5 BASIC4.78□□□□□ -1.64
SHMT2P34897 TIPARP-205ENST00000486483 2150 ntAPPRIS P1 TSL 5 BASIC4.78□□□□□ -1.64
SHMT2P34897 MTRNR2L11-201ENST00000604646 1552 ntAPPRIS P1 BASIC4.78□□□□□ -1.64
SHMT2P34897 MED12L-201ENST00000273432 6401 ntTSL 2 BASIC4.77□□□□□ -1.65
SHMT2P34897 LINC00989-201ENST00000508174 2080 ntTSL 3 BASIC4.77□□□□□ -1.65
SHMT2P34897 OR2L5-201ENST00000355281 2429 ntAPPRIS P1 BASIC4.77□□□□□ -1.65
SHMT2P34897 GRAMD1C-208ENST00000472026 1876 ntTSL 2 BASIC4.77□□□□□ -1.65
SHMT2P34897 AC239809.3-214ENST00000496508 2513 ntTSL 2 BASIC4.77□□□□□ -1.65
SHMT2P34897 PPP1R9A-207ENST00000433881 9928 ntAPPRIS P1 TSL 5 BASIC4.77□□□□□ -1.65
SHMT2P34897 GNAS-202ENST00000306090 477 ntTSL 5 BASIC4.77□□□□□ -1.65
SHMT2P34897 TRBV21OR9-2-201ENST00000331828 367 ntAPPRIS P1 BASIC4.77□□□□□ -1.65
SHMT2P34897 CCNB3-202ENST00000348603 1201 ntTSL 1 (best) BASIC4.77□□□□□ -1.65
SHMT2P34897 RNU4-44P-201ENST00000363050 141 ntBASIC4.77□□□□□ -1.65
SHMT2P34897 SAR1A-201ENST00000373236 437 ntTSL 1 (best) BASIC4.77□□□□□ -1.65
SHMT2P34897 CCNB3-203ENST00000376038 1201 ntTSL 5 BASIC4.77□□□□□ -1.65
SHMT2P34897 HMGB3P7-201ENST00000400214 611 ntBASIC4.77□□□□□ -1.65
SHMT2P34897 SNORA79B-201ENST00000410557 148 ntBASIC4.77□□□□□ -1.65
SHMT2P34897 GTF2IP5-201ENST00000414608 731 ntBASIC4.77□□□□□ -1.65
SHMT2P34897 MTND4LP21-201ENST00000415303 295 ntBASIC4.77□□□□□ -1.65
SHMT2P34897 Z99289.1-206ENST00000425503 393 ntTSL 3 BASIC4.77□□□□□ -1.65
SHMT2P34897 AC093414.1-201ENST00000434712 514 ntBASIC4.77□□□□□ -1.65
SHMT2P34897 PA2G4P6-201ENST00000438325 1197 ntBASIC4.77□□□□□ -1.65
SHMT2P34897 RPL31P44-201ENST00000447680 377 ntBASIC4.77□□□□□ -1.65
SHMT2P34897 AC114814.3-201ENST00000449362 663 ntTSL 2 BASIC4.77□□□□□ -1.65
SHMT2P34897 AL353152.1-201ENST00000455973 470 ntTSL 5 BASIC4.77□□□□□ -1.65
SHMT2P34897 LINC01921-201ENST00000456163 393 ntTSL 1 (best) BASIC4.77□□□□□ -1.65
SHMT2P34897 RPS3AP41-201ENST00000462701 778 ntBASIC4.77□□□□□ -1.65
Retrieved 100 of 98,524 protein–RNA pairs in 78.2 ms