Protein–RNA interactions for Protein: P09017

HOXC4, Homeobox protein Hox-C4, humanhuman

Predicted RBP Predictions only

Length 264 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC4P09017 NPM1P33-201ENST00000438918 872 ntBASIC4.77□□□□□ -1.65
HOXC4P09017 TRIM31-AS1-204ENST00000440874 549 ntTSL 3 BASIC4.77□□□□□ -1.65
HOXC4P09017 CEACAMP9-201ENST00000442990 513 ntBASIC4.77□□□□□ -1.65
HOXC4P09017 H2AFZP6-201ENST00000444403 394 ntBASIC4.77□□□□□ -1.65
HOXC4P09017 AC010326.1-201ENST00000462726 602 ntBASIC4.77□□□□□ -1.65
HOXC4P09017 AP001961.1-201ENST00000515782 526 ntTSL 3 BASIC4.77□□□□□ -1.65
HOXC4P09017 AC006206.2-202ENST00000537714 648 ntTSL 5 BASIC4.77□□□□□ -1.65
HOXC4P09017 AC024909.1-201ENST00000549278 599 ntTSL 4 BASIC4.77□□□□□ -1.65
HOXC4P09017 AC026401.1-201ENST00000549756 530 ntTSL 3 BASIC4.77□□□□□ -1.65
HOXC4P09017 AC073525.1-201ENST00000549762 543 ntTSL 3 BASIC4.77□□□□□ -1.65
HOXC4P09017 AL049839.1-201ENST00000556151 657 ntBASIC4.77□□□□□ -1.65
HOXC4P09017 MIR5699-201ENST00000578903 90 ntBASIC4.77□□□□□ -1.65
HOXC4P09017 AP000919.3-201ENST00000582591 568 ntTSL 3 BASIC4.77□□□□□ -1.65
HOXC4P09017 AC093484.5-201ENST00000585048 304 ntTSL 3 BASIC4.77□□□□□ -1.65
HOXC4P09017 RPL27-207ENST00000590864 569 ntTSL 2 BASIC4.77□□□□□ -1.65
HOXC4P09017 AL391422.2-201ENST00000602854 361 ntTSL 2 BASIC4.77□□□□□ -1.65
HOXC4P09017 FAM27B-201ENST00000610601 213 ntBASIC4.77□□□□□ -1.65
HOXC4P09017 CCL14-204ENST00000622526 472 ntTSL 3 BASIC4.77□□□□□ -1.65
HOXC4P09017 AP001642.1-201ENST00000624727 2117 ntBASIC4.77□□□□□ -1.65
HOXC4P09017 DARS-AS1-230ENST00000631306 530 ntTSL 5 BASIC4.77□□□□□ -1.65
HOXC4P09017 AC006453.5-201ENST00000636451 619 ntBASIC4.77□□□□□ -1.65
HOXC4P09017 NBPF9-208ENST00000621074 4302 ntTSL 5 BASIC4.77□□□□□ -1.65
HOXC4P09017 RIF1-203ENST00000428287 7722 ntAPPRIS ALT2 TSL 1 (best) BASIC4.77□□□□□ -1.65
HOXC4P09017 LINC02085-201ENST00000465215 2051 ntTSL 2 BASIC4.77□□□□□ -1.65
HOXC4P09017 LINC01249-201ENST00000412134 2663 ntTSL 1 (best) BASIC4.77□□□□□ -1.65
HOXC4P09017 A1CF-207ENST00000395495 9400 ntTSL 5 BASIC4.77□□□□□ -1.65
HOXC4P09017 AC011503.2-201ENST00000594230 1500 ntBASIC4.77□□□□□ -1.65
HOXC4P09017 TDRD3-204ENST00000377894 2484 ntTSL 2 BASIC4.77□□□□□ -1.65
HOXC4P09017 CD69-201ENST00000228434 1676 ntAPPRIS P1 TSL 1 (best) BASIC4.77□□□□□ -1.65
HOXC4P09017 FAM111B-206ENST00000620384 3405 ntAPPRIS P1 TSL 2 BASIC4.76□□□□□ -1.65
HOXC4P09017 ZNF410-211ENST00000555044 2601 ntAPPRIS P1 TSL 1 (best) BASIC4.76□□□□□ -1.65
HOXC4P09017 MAP2-205ENST00000392194 5303 ntTSL 1 (best) BASIC4.76□□□□□ -1.65
HOXC4P09017 GHR-210ENST00000615111 4814 ntAPPRIS P1 TSL 5 BASIC4.76□□□□□ -1.65
HOXC4P09017 ANAPC1P1-201ENST00000426186 2145 ntBASIC4.76□□□□□ -1.65
HOXC4P09017 GHR-207ENST00000537449 4419 ntAPPRIS P1 TSL 5 BASIC4.76□□□□□ -1.65
HOXC4P09017 ASB14-202ENST00000487349 3179 ntAPPRIS P2 TSL 1 (best) BASIC4.76□□□□□ -1.65
HOXC4P09017 THAP6-202ENST00000380837 3423 ntAPPRIS ALT2 TSL 1 (best) BASIC4.76□□□□□ -1.65
HOXC4P09017 AL022311.1-201ENST00000623726 19416 ntBASIC4.76□□□□□ -1.65
HOXC4P09017 CCL20-201ENST00000358813 800 ntAPPRIS P3 TSL 1 (best) BASIC4.76□□□□□ -1.65
HOXC4P09017 OR2M5-201ENST00000366476 939 ntAPPRIS P1 BASIC4.76□□□□□ -1.65
HOXC4P09017 PLEKHS1-204ENST00000369310 2046 ntAPPRIS ALT2 TSL 1 (best) BASIC4.76□□□□□ -1.65
HOXC4P09017 RPS16P5-201ENST00000406501 404 ntBASIC4.76□□□□□ -1.65
HOXC4P09017 RSU1P3-201ENST00000412878 835 ntBASIC4.76□□□□□ -1.65
HOXC4P09017 AL359378.2-201ENST00000415575 746 ntTSL 2 BASIC4.76□□□□□ -1.65
HOXC4P09017 AC092570.3-201ENST00000420113 693 ntBASIC4.76□□□□□ -1.65
HOXC4P09017 RPS17P8-201ENST00000434525 335 ntBASIC4.76□□□□□ -1.65
HOXC4P09017 AL451139.1-201ENST00000434718 346 ntBASIC4.76□□□□□ -1.65
HOXC4P09017 AC016831.4-201ENST00000438302 307 ntBASIC4.76□□□□□ -1.65
HOXC4P09017 AC011753.3-201ENST00000443436 406 ntBASIC4.76□□□□□ -1.65
HOXC4P09017 LINC01828-201ENST00000445514 531 ntTSL 4 BASIC4.76□□□□□ -1.65
HOXC4P09017 AC073264.2-201ENST00000448886 166 ntBASIC4.76□□□□□ -1.65
HOXC4P09017 AL365271.1-201ENST00000448909 603 ntTSL 3 BASIC4.76□□□□□ -1.65
HOXC4P09017 HAX1-208ENST00000483970 1151 ntTSL 2 BASIC4.76□□□□□ -1.65
HOXC4P09017 RN7SL346P-201ENST00000491561 294 ntBASIC4.76□□□□□ -1.65
HOXC4P09017 LINC02236-201ENST00000508881 552 ntTSL 4 BASIC4.76□□□□□ -1.65
HOXC4P09017 AC026434.1-201ENST00000511474 454 ntTSL 3 BASIC4.76□□□□□ -1.65
HOXC4P09017 RNA5SP228-201ENST00000516232 133 ntBASIC4.76□□□□□ -1.65
HOXC4P09017 HDAC2-AS2-209ENST00000519270 1244 ntTSL 4 BASIC4.76□□□□□ -1.65
HOXC4P09017 AC103853.1-201ENST00000520588 649 ntTSL 5 BASIC4.76□□□□□ -1.65
HOXC4P09017 TAS2R46-201ENST00000533467 930 ntAPPRIS P1 BASIC4.76□□□□□ -1.65
HOXC4P09017 AP006289.1-201ENST00000538089 277 ntBASIC4.76□□□□□ -1.65
HOXC4P09017 TIPARP-207ENST00000542783 3681 ntAPPRIS P1 TSL 1 (best) BASIC4.76□□□□□ -1.65
HOXC4P09017 BNIP3P1-201ENST00000547295 580 ntBASIC4.76□□□□□ -1.65
HOXC4P09017 AC133555.2-201ENST00000550213 292 ntBASIC4.76□□□□□ -1.65
HOXC4P09017 AC127024.5-201ENST00000580085 462 ntBASIC4.76□□□□□ -1.65
HOXC4P09017 AL022401.1-201ENST00000619498 108 ntBASIC4.76□□□□□ -1.65
HOXC4P09017 CCL4L2-215ENST00000620055 537 ntTSL 1 (best) BASIC4.76□□□□□ -1.65
HOXC4P09017 CCL4-203ENST00000621626 552 ntTSL 1 (best) BASIC4.76□□□□□ -1.65
HOXC4P09017 SMARCA2-231ENST00000634931 939 ntTSL 5 BASIC4.76□□□□□ -1.65
HOXC4P09017 ZFPM2-203ENST00000517361 3300 ntTSL 2 BASIC4.76□□□□□ -1.65
HOXC4P09017 STK31-201ENST00000354639 3596 ntTSL 1 (best) BASIC4.76□□□□□ -1.65
HOXC4P09017 AC104623.2-202ENST00000623477 4002 ntBASIC4.75□□□□□ -1.65
HOXC4P09017 OR4E1-202ENST00000641792 3742 ntAPPRIS P5 BASIC4.75□□□□□ -1.65
HOXC4P09017 GBA3-205ENST00000511446 2018 ntTSL 2 BASIC4.75□□□□□ -1.65
HOXC4P09017 SDC2-204ENST00000519914 1318 ntTSL 2 BASIC4.75□□□□□ -1.65
HOXC4P09017 AL929601.4-201ENST00000613011 1341 ntBASIC4.75□□□□□ -1.65
HOXC4P09017 GYS2-201ENST00000261195 3132 ntAPPRIS P1 TSL 1 (best) BASIC4.75□□□□□ -1.65
HOXC4P09017 OR8A1-203ENST00000641670 5709 ntAPPRIS P1 BASIC4.75□□□□□ -1.65
HOXC4P09017 OR8H2-201ENST00000313503 3088 ntAPPRIS P2 BASIC4.75□□□□□ -1.65
HOXC4P09017 AC239809.3-214ENST00000496508 2513 ntTSL 2 BASIC4.75□□□□□ -1.65
HOXC4P09017 MRPL50-201ENST00000374865 3332 ntAPPRIS P1 TSL 1 (best) BASIC4.75□□□□□ -1.65
HOXC4P09017 PCDH9-201ENST00000377861 28227 ntTSL 1 (best) BASIC4.75□□□□□ -1.65
HOXC4P09017 AC106895.2-201ENST00000511291 1824 ntTSL 3 BASIC4.75□□□□□ -1.65
HOXC4P09017 BDH2-201ENST00000296424 1126 ntAPPRIS P1 TSL 1 (best) BASIC4.75□□□□□ -1.65
HOXC4P09017 ELSPBP1-201ENST00000339841 1052 ntAPPRIS P2 TSL 1 (best) BASIC4.75□□□□□ -1.65
HOXC4P09017 MANSC4-201ENST00000381273 1023 ntAPPRIS P1 TSL 5 BASIC4.75□□□□□ -1.65
HOXC4P09017 AC019050.1-201ENST00000418508 492 ntBASIC4.75□□□□□ -1.65
HOXC4P09017 AL590723.1-201ENST00000426030 629 ntTSL 5 BASIC4.75□□□□□ -1.65
HOXC4P09017 RPL34P6-201ENST00000432390 345 ntBASIC4.75□□□□□ -1.65
HOXC4P09017 AL732323.1-201ENST00000445897 456 ntTSL 3 BASIC4.75□□□□□ -1.65
HOXC4P09017 AL589765.3-201ENST00000446084 462 ntBASIC4.75□□□□□ -1.65
HOXC4P09017 AC010733.1-201ENST00000451515 401 ntBASIC4.75□□□□□ -1.65
HOXC4P09017 AC093166.2-201ENST00000455969 1017 ntBASIC4.75□□□□□ -1.65
HOXC4P09017 AC073486.1-202ENST00000458437 489 ntTSL 3 BASIC4.75□□□□□ -1.65
HOXC4P09017 MRPS33-209ENST00000496958 688 ntAPPRIS P1 TSL 3 BASIC4.75□□□□□ -1.65
HOXC4P09017 LINC02215-201ENST00000503320 543 ntTSL 4 BASIC4.75□□□□□ -1.65
HOXC4P09017 RNU6-709P-201ENST00000517257 104 ntBASIC4.75□□□□□ -1.65
HOXC4P09017 AC022915.1-201ENST00000521660 289 ntTSL 3 BASIC4.75□□□□□ -1.65
HOXC4P09017 AC021393.1-201ENST00000531077 433 ntTSL 3 BASIC4.75□□□□□ -1.65
HOXC4P09017 LINC02327-203ENST00000550122 738 ntTSL 2 BASIC4.75□□□□□ -1.65
Retrieved 100 of 98,524 protein–RNA pairs in 80.1 ms