Protein–RNA interactions for Protein: Q96JC1

VPS39, Vam6/Vps39-like protein, humanhuman

Predictions only

Length 886 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39Q96JC1 PYM1-205ENST00000547925 499 ntTSL 3 BASIC5.08□□□□□ -1.6
VPS39Q96JC1 AL049779.2-201ENST00000553847 315 ntBASIC5.08□□□□□ -1.6
VPS39Q96JC1 AC068714.1-201ENST00000559623 800 ntBASIC5.08□□□□□ -1.6
VPS39Q96JC1 AC018552.3-201ENST00000567416 561 ntBASIC5.08□□□□□ -1.6
VPS39Q96JC1 AC022166.1-201ENST00000567851 581 ntTSL 5 BASIC5.08□□□□□ -1.6
VPS39Q96JC1 AP005059.1-201ENST00000578391 456 ntTSL 2 BASIC5.08□□□□□ -1.6
VPS39Q96JC1 AC007922.3-201ENST00000581648 543 ntTSL 3 BASIC5.08□□□□□ -1.6
VPS39Q96JC1 ZNF227-204ENST00000586228 569 ntTSL 2 BASIC5.08□□□□□ -1.6
VPS39Q96JC1 AP001120.2-201ENST00000589395 296 ntTSL 3 BASIC5.08□□□□□ -1.6
VPS39Q96JC1 MALAT1-205ENST00000610851 584 ntTSL 2 BASIC5.08□□□□□ -1.6
VPS39Q96JC1 AC109309.2-201ENST00000612597 332 ntBASIC5.08□□□□□ -1.6
VPS39Q96JC1 AC037198.3-201ENST00000616754 526 ntBASIC5.08□□□□□ -1.6
VPS39Q96JC1 AC131238.1-201ENST00000617135 328 ntBASIC5.08□□□□□ -1.6
VPS39Q96JC1 SHMT1-211ENST00000618902 378 ntTSL 5 BASIC5.08□□□□□ -1.6
VPS39Q96JC1 AC090527.3-201ENST00000619041 548 ntBASIC5.08□□□□□ -1.6
VPS39Q96JC1 AC136428.4-201ENST00000634254 1155 ntBASIC5.08□□□□□ -1.6
VPS39Q96JC1 ASAH1-224ENST00000636269 685 ntTSL 3 BASIC5.08□□□□□ -1.6
VPS39Q96JC1 RABGAP1L-205ENST00000367687 1849 ntTSL 2 BASIC5.08□□□□□ -1.6
VPS39Q96JC1 NRG1-220ENST00000539990 2401 ntTSL 2 BASIC5.08□□□□□ -1.6
VPS39Q96JC1 WDR35-202ENST00000345530 6960 ntAPPRIS ALT1 TSL 1 (best) BASIC5.08□□□□□ -1.6
VPS39Q96JC1 MYB-226ENST00000528774 2277 ntAPPRIS ALT1 TSL 1 (best) BASIC5.08□□□□□ -1.6
VPS39Q96JC1 POU2F1-206ENST00000429375 13651 ntAPPRIS ALT2 TSL 2 BASIC5.08□□□□□ -1.6
VPS39Q96JC1 GABRG2-202ENST00000361925 3767 ntTSL 3 BASIC5.08□□□□□ -1.6
VPS39Q96JC1 ERC2-201ENST00000288221 6138 ntAPPRIS P1 TSL 1 (best) BASIC5.08□□□□□ -1.6
VPS39Q96JC1 AL161911.1-202ENST00000464488 1534 ntAPPRIS P1 TSL 5 BASIC5.07□□□□□ -1.6
VPS39Q96JC1 OR5A1-202ENST00000641045 8612 ntAPPRIS P1 BASIC5.07□□□□□ -1.6
VPS39Q96JC1 ZNF445-201ENST00000396077 18299 ntAPPRIS P1 TSL 1 (best) BASIC5.07□□□□□ -1.6
VPS39Q96JC1 PRG4-202ENST00000367483 4921 ntTSL 5 BASIC5.07□□□□□ -1.6
VPS39Q96JC1 ZNF284-201ENST00000421176 4351 ntAPPRIS P1 TSL 1 (best) BASIC5.07□□□□□ -1.6
VPS39Q96JC1 HERC1-201ENST00000443617 15137 ntAPPRIS P1 TSL 1 (best) BASIC5.07□□□□□ -1.6
VPS39Q96JC1 AC106895.2-201ENST00000511291 1824 ntTSL 3 BASIC5.07□□□□□ -1.6
VPS39Q96JC1 NUDT12-202ENST00000507423 1781 ntTSL 2 BASIC5.07□□□□□ -1.6
VPS39Q96JC1 AL672167.1-204ENST00000641875 3017 ntBASIC5.07□□□□□ -1.6
VPS39Q96JC1 AC011155.1-201ENST00000316512 456 ntBASIC5.07□□□□□ -1.6
VPS39Q96JC1 RNA5SP183-201ENST00000362452 119 ntBASIC5.07□□□□□ -1.6
VPS39Q96JC1 SVBP-202ENST00000372522 650 ntAPPRIS P1 TSL 3 BASIC5.07□□□□□ -1.6
VPS39Q96JC1 AC019155.1-201ENST00000382242 574 ntBASIC5.07□□□□□ -1.6
VPS39Q96JC1 ZSCAN12P1-201ENST00000406489 419 ntBASIC5.07□□□□□ -1.6
VPS39Q96JC1 RN7SKP206-201ENST00000410823 293 ntBASIC5.07□□□□□ -1.6
VPS39Q96JC1 LINC00308-201ENST00000419431 727 ntTSL 5 BASIC5.07□□□□□ -1.6
VPS39Q96JC1 AL691447.1-201ENST00000419456 387 ntBASIC5.07□□□□□ -1.6
VPS39Q96JC1 AC108075.1-201ENST00000424692 529 ntBASIC5.07□□□□□ -1.6
VPS39Q96JC1 TXNIP-201ENST00000425134 1225 ntTSL 2 BASIC5.07□□□□□ -1.6
VPS39Q96JC1 NANOGP4-201ENST00000427230 913 ntBASIC5.07□□□□□ -1.6
VPS39Q96JC1 AL080316.1-201ENST00000432438 499 ntTSL 2 BASIC5.07□□□□□ -1.6
VPS39Q96JC1 RPS20P1-201ENST00000434853 354 ntBASIC5.07□□□□□ -1.6
VPS39Q96JC1 AL591719.2-201ENST00000437400 386 ntTSL 3 BASIC5.07□□□□□ -1.6
VPS39Q96JC1 AC091685.1-201ENST00000442436 448 ntTSL 3 BASIC5.07□□□□□ -1.6
VPS39Q96JC1 AL356981.1-201ENST00000454879 684 ntBASIC5.07□□□□□ -1.6
VPS39Q96JC1 LINC01158-205ENST00000458253 747 ntTSL 5 BASIC5.07□□□□□ -1.6
VPS39Q96JC1 AC104629.2-201ENST00000468627 598 ntBASIC5.07□□□□□ -1.6
VPS39Q96JC1 SIAH1P1-201ENST00000479411 923 ntBASIC5.07□□□□□ -1.6
VPS39Q96JC1 EEF1A1P25-201ENST00000495704 1267 ntBASIC5.07□□□□□ -1.6
VPS39Q96JC1 AC108693.1-201ENST00000496068 432 ntBASIC5.07□□□□□ -1.6
VPS39Q96JC1 RN7SL591P-201ENST00000496150 292 ntBASIC5.07□□□□□ -1.6
VPS39Q96JC1 RN7SL101P-201ENST00000496350 279 ntBASIC5.07□□□□□ -1.6
VPS39Q96JC1 AC025187.1-201ENST00000506305 686 ntTSL 3 BASIC5.07□□□□□ -1.6
VPS39Q96JC1 AC106872.4-201ENST00000510050 523 ntBASIC5.07□□□□□ -1.6
VPS39Q96JC1 LINC01060-205ENST00000512839 716 ntTSL 1 (best) BASIC5.07□□□□□ -1.6
VPS39Q96JC1 AC108471.1-201ENST00000513977 287 ntBASIC5.07□□□□□ -1.6
VPS39Q96JC1 AC026719.2-201ENST00000515656 295 ntTSL 3 BASIC5.07□□□□□ -1.6
VPS39Q96JC1 AC068672.3-201ENST00000524017 824 ntTSL 3 BASIC5.07□□□□□ -1.6
VPS39Q96JC1 EIF4A2P3-201ENST00000525903 1055 ntBASIC5.07□□□□□ -1.6
VPS39Q96JC1 AC024940.3-201ENST00000538551 316 ntBASIC5.07□□□□□ -1.6
VPS39Q96JC1 LINC02375-201ENST00000545739 852 ntTSL 1 (best) BASIC5.07□□□□□ -1.6
VPS39Q96JC1 HAGLR-211ENST00000549329 609 ntTSL 4 BASIC5.07□□□□□ -1.6
VPS39Q96JC1 AL512310.9-201ENST00000553311 948 ntBASIC5.07□□□□□ -1.6
VPS39Q96JC1 AC092078.2-201ENST00000560900 581 ntTSL 4 BASIC5.07□□□□□ -1.6
VPS39Q96JC1 LINC01243-201ENST00000562065 721 ntTSL 1 (best) BASIC5.07□□□□□ -1.6
VPS39Q96JC1 MTCO2P22-201ENST00000603246 681 ntBASIC5.07□□□□□ -1.6
VPS39Q96JC1 AC079395.2-201ENST00000610982 737 ntBASIC5.07□□□□□ -1.6
VPS39Q96JC1 AC015914.2-201ENST00000618167 288 ntBASIC5.07□□□□□ -1.6
VPS39Q96JC1 AC107068.1-201ENST00000563286 4218 ntBASIC5.07□□□□□ -1.6
VPS39Q96JC1 MARCH1-202ENST00000339875 2476 ntTSL 1 (best) BASIC5.07□□□□□ -1.6
VPS39Q96JC1 MTERF1-202ENST00000406735 1639 ntAPPRIS ALT2 TSL 2 BASIC5.07□□□□□ -1.6
VPS39Q96JC1 UBR5-204ENST00000518205 1931 ntTSL 5 BASIC5.07□□□□□ -1.6
VPS39Q96JC1 KCNRG-201ENST00000312942 1527 ntAPPRIS P1 TSL 1 (best) BASIC5.07□□□□□ -1.6
VPS39Q96JC1 CREM-202ENST00000342105 1541 ntTSL 1 (best) BASIC5.07□□□□□ -1.6
VPS39Q96JC1 EDA2R-202ENST00000374719 3418 ntAPPRIS P3 TSL 1 (best) BASIC5.07□□□□□ -1.6
VPS39Q96JC1 ATP7A-202ENST00000343533 8289 ntTSL 5 BASIC5.07□□□□□ -1.6
VPS39Q96JC1 NLRC4-203ENST00000402280 3355 ntAPPRIS P1 TSL 1 (best) BASIC5.07□□□□□ -1.6
VPS39Q96JC1 SERPINA9-204ENST00000424550 1462 ntTSL 1 (best) BASIC5.07□□□□□ -1.6
VPS39Q96JC1 FAP-203ENST00000443424 2598 ntTSL 2 BASIC5.07□□□□□ -1.6
VPS39Q96JC1 RGS5-201ENST00000313961 5862 ntAPPRIS P3 TSL 1 (best) BASIC5.07□□□□□ -1.6
VPS39Q96JC1 KLHL13-201ENST00000262820 3972 ntAPPRIS P3 TSL 1 (best) BASIC5.06□□□□□ -1.6
VPS39Q96JC1 PAK3-213ENST00000620137 2130 ntTSL 5 BASIC5.06□□□□□ -1.6
VPS39Q96JC1 MTERF1-203ENST00000419292 3882 ntAPPRIS ALT2 TSL 1 (best) BASIC5.06□□□□□ -1.6
VPS39Q96JC1 CLSPN-206ENST00000520551 4010 ntTSL 1 (best) BASIC5.06□□□□□ -1.6
VPS39Q96JC1 OR6C3-202ENST00000641364 1341 ntAPPRIS P1 BASIC5.06□□□□□ -1.6
VPS39Q96JC1 OR14C36-201ENST00000317861 939 ntAPPRIS P1 BASIC5.06□□□□□ -1.6
VPS39Q96JC1 MRRF-207ENST00000373729 870 ntTSL 3 BASIC5.06□□□□□ -1.6
VPS39Q96JC1 U3.25-201ENST00000391209 220 ntBASIC5.06□□□□□ -1.6
VPS39Q96JC1 AC013442.1-201ENST00000397347 228 ntBASIC5.06□□□□□ -1.6
VPS39Q96JC1 RNU6-603P-201ENST00000411403 107 ntBASIC5.06□□□□□ -1.6
VPS39Q96JC1 AC073136.2-201ENST00000417282 849 ntBASIC5.06□□□□□ -1.6
VPS39Q96JC1 AC092570.3-201ENST00000420113 693 ntBASIC5.06□□□□□ -1.6
VPS39Q96JC1 RPL7L1P9-201ENST00000431298 745 ntBASIC5.06□□□□□ -1.6
VPS39Q96JC1 RPL12P46-201ENST00000436610 195 ntBASIC5.06□□□□□ -1.6
VPS39Q96JC1 METTL15P1-201ENST00000481421 1045 ntBASIC5.06□□□□□ -1.6
VPS39Q96JC1 CEP170-216ENST00000490813 1070 ntTSL 1 (best) BASIC5.06□□□□□ -1.6
Retrieved 100 of 98,524 protein–RNA pairs in 91.4 ms