Protein–RNA interactions for Protein: Q8N4P3

HDDC3, Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase MESH1, humanhuman

Predictions only

Length 179 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3Q8N4P3 TRAV12-2-201ENST00000390437 445 ntAPPRIS P1 BASIC5.22□□□□□ -1.57
HDDC3Q8N4P3 OXSM-202ENST00000420173 1256 ntTSL 1 (best) BASIC5.22□□□□□ -1.57
HDDC3Q8N4P3 OR6K4P-201ENST00000423179 955 ntBASIC5.22□□□□□ -1.57
HDDC3Q8N4P3 AL451047.1-201ENST00000424451 814 ntTSL 3 BASIC5.22□□□□□ -1.57
HDDC3Q8N4P3 RPS27AP6-201ENST00000427962 448 ntBASIC5.22□□□□□ -1.57
HDDC3Q8N4P3 AC092920.1-201ENST00000428516 678 ntTSL 5 BASIC5.22□□□□□ -1.57
HDDC3Q8N4P3 AF230666.1-201ENST00000429151 786 ntTSL 2 BASIC5.22□□□□□ -1.57
HDDC3Q8N4P3 AC097523.2-201ENST00000435551 652 ntBASIC5.22□□□□□ -1.57
HDDC3Q8N4P3 AC092941.2-201ENST00000444379 1008 ntTSL 3 BASIC5.22□□□□□ -1.57
HDDC3Q8N4P3 CALM1P2-201ENST00000452941 448 ntBASIC5.22□□□□□ -1.57
HDDC3Q8N4P3 AL672167.3-201ENST00000465951 960 ntBASIC5.22□□□□□ -1.57
HDDC3Q8N4P3 RN7SL385P-201ENST00000468873 276 ntBASIC5.22□□□□□ -1.57
HDDC3Q8N4P3 AC096741.1-201ENST00000472250 846 ntBASIC5.22□□□□□ -1.57
HDDC3Q8N4P3 AC008897.1-201ENST00000494006 347 ntBASIC5.22□□□□□ -1.57
HDDC3Q8N4P3 LINC02231-201ENST00000510459 447 ntTSL 3 BASIC5.22□□□□□ -1.57
HDDC3Q8N4P3 OR7E10P-201ENST00000526420 991 ntBASIC5.22□□□□□ -1.57
HDDC3Q8N4P3 AC074031.1-201ENST00000550634 734 ntTSL 3 BASIC5.22□□□□□ -1.57
HDDC3Q8N4P3 LINC02301-201ENST00000553760 773 ntTSL 3 BASIC5.22□□□□□ -1.57
HDDC3Q8N4P3 LINC02303-204ENST00000555442 889 ntTSL 3 BASIC5.22□□□□□ -1.57
HDDC3Q8N4P3 AC016987.1-201ENST00000558587 499 ntTSL 2 BASIC5.22□□□□□ -1.57
HDDC3Q8N4P3 AC009268.1-201ENST00000561352 1203 ntBASIC5.22□□□□□ -1.57
HDDC3Q8N4P3 MIR4270-201ENST00000581799 70 ntBASIC5.22□□□□□ -1.57
HDDC3Q8N4P3 CTSV-203ENST00000538255 4322 ntAPPRIS P1 TSL 1 (best) BASIC5.22□□□□□ -1.57
HDDC3Q8N4P3 SLC1A3-216ENST00000613445 4030 ntTSL 5 BASIC5.22□□□□□ -1.57
HDDC3Q8N4P3 MRRF-208ENST00000394315 1501 ntTSL 1 (best) BASIC5.22□□□□□ -1.57
HDDC3Q8N4P3 CDKL3-210ENST00000523832 1501 ntAPPRIS ALT2 TSL 1 (best) BASIC5.22□□□□□ -1.57
HDDC3Q8N4P3 ZMYM6-201ENST00000317538 2702 ntTSL 1 (best) BASIC5.22□□□□□ -1.57
HDDC3Q8N4P3 CFAP47-203ENST00000378653 9943 ntAPPRIS P2 TSL 5 BASIC5.22□□□□□ -1.57
HDDC3Q8N4P3 MPDZ-212ENST00000538841 3186 ntTSL 2 BASIC5.22□□□□□ -1.57
HDDC3Q8N4P3 MUC2-202ENST00000613187 4845 ntBASIC5.22□□□□□ -1.57
HDDC3Q8N4P3 LINC01538-201ENST00000588074 2408 ntTSL 1 (best) BASIC5.22□□□□□ -1.57
HDDC3Q8N4P3 SLC35A1-201ENST00000369552 1851 ntAPPRIS P1 TSL 1 (best) BASIC5.22□□□□□ -1.57
HDDC3Q8N4P3 DAZ4-205ENST00000440066 1891 ntTSL 5 BASIC5.22□□□□□ -1.57
HDDC3Q8N4P3 GHR-207ENST00000537449 4419 ntAPPRIS P1 TSL 5 BASIC5.22□□□□□ -1.57
HDDC3Q8N4P3 DCX-202ENST00000358070 9405 ntAPPRIS ALT1 TSL 1 (best) BASIC5.21□□□□□ -1.57
HDDC3Q8N4P3 A2MP1-204ENST00000566278 4130 ntBASIC5.21□□□□□ -1.57
HDDC3Q8N4P3 ALB-202ENST00000401494 1659 ntTSL 5 BASIC5.21□□□□□ -1.57
HDDC3Q8N4P3 MUM1L1-202ENST00000357175 4173 ntAPPRIS P1 TSL 2 BASIC5.21□□□□□ -1.57
HDDC3Q8N4P3 SLCO1A2-201ENST00000307378 7682 ntAPPRIS P1 TSL 1 (best) BASIC5.21□□□□□ -1.57
HDDC3Q8N4P3 MTUS1-202ENST00000297488 3731 ntAPPRIS ALT1 TSL 1 (best) BASIC5.21□□□□□ -1.57
HDDC3Q8N4P3 ZNF83-202ENST00000536937 2726 ntAPPRIS P1 TSL 2 BASIC5.21□□□□□ -1.58
HDDC3Q8N4P3 NBPF9-208ENST00000621074 4302 ntTSL 5 BASIC5.21□□□□□ -1.58
HDDC3Q8N4P3 EEF1A1P36-201ENST00000427807 1351 ntBASIC5.21□□□□□ -1.58
HDDC3Q8N4P3 LINC00032-203ENST00000640247 1374 ntTSL 5 BASIC5.21□□□□□ -1.58
HDDC3Q8N4P3 AHCTF1-201ENST00000326225 8633 ntAPPRIS P2 TSL 1 (best) BASIC5.21□□□□□ -1.58
HDDC3Q8N4P3 RN7SKP153-201ENST00000365026 316 ntBASIC5.21□□□□□ -1.58
HDDC3Q8N4P3 RNA5SP87-201ENST00000384155 118 ntBASIC5.21□□□□□ -1.58
HDDC3Q8N4P3 SNORA5.1-201ENST00000384275 131 ntBASIC5.21□□□□□ -1.58
HDDC3Q8N4P3 MTERF4-204ENST00000406593 802 ntTSL 2 BASIC5.21□□□□□ -1.58
HDDC3Q8N4P3 RNA5SP296-201ENST00000410523 111 ntBASIC5.21□□□□□ -1.58
HDDC3Q8N4P3 RNU6-564P-201ENST00000410983 104 ntBASIC5.21□□□□□ -1.58
HDDC3Q8N4P3 AC124944.2-201ENST00000429866 1242 ntBASIC5.21□□□□□ -1.58
HDDC3Q8N4P3 AC008072.1-201ENST00000434254 824 ntBASIC5.21□□□□□ -1.58
HDDC3Q8N4P3 AL161722.2-201ENST00000434731 981 ntBASIC5.21□□□□□ -1.58
HDDC3Q8N4P3 MTCYBP29-201ENST00000436327 1006 ntBASIC5.21□□□□□ -1.58
HDDC3Q8N4P3 AL591719.2-201ENST00000437400 386 ntTSL 3 BASIC5.21□□□□□ -1.58
HDDC3Q8N4P3 AL354794.1-201ENST00000442103 516 ntTSL 3 BASIC5.21□□□□□ -1.58
HDDC3Q8N4P3 FHP1-201ENST00000442741 703 ntBASIC5.21□□□□□ -1.58
HDDC3Q8N4P3 AL592431.1-201ENST00000451090 317 ntTSL 3 BASIC5.21□□□□□ -1.58
HDDC3Q8N4P3 NDUFA12P1-201ENST00000455914 406 ntBASIC5.21□□□□□ -1.58
HDDC3Q8N4P3 RPS27L-205ENST00000462430 681 ntTSL 2 BASIC5.21□□□□□ -1.58
HDDC3Q8N4P3 GTPBP8-204ENST00000467752 686 ntTSL 5 BASIC5.21□□□□□ -1.58
HDDC3Q8N4P3 AC026316.2-201ENST00000473110 263 ntTSL 3 BASIC5.21□□□□□ -1.58
HDDC3Q8N4P3 HMGN2P25-201ENST00000486956 268 ntBASIC5.21□□□□□ -1.58
HDDC3Q8N4P3 LINC02502-201ENST00000505122 642 ntTSL 4 BASIC5.21□□□□□ -1.58
HDDC3Q8N4P3 AC097110.1-201ENST00000507344 768 ntTSL 2 BASIC5.21□□□□□ -1.58
HDDC3Q8N4P3 AC006427.1-201ENST00000514359 712 ntBASIC5.21□□□□□ -1.58
HDDC3Q8N4P3 LINC02382-201ENST00000515840 614 ntTSL 1 (best) BASIC5.21□□□□□ -1.58
HDDC3Q8N4P3 AC022360.1-201ENST00000521058 340 ntBASIC5.21□□□□□ -1.58
HDDC3Q8N4P3 AF117829.1-209ENST00000523995 767 ntTSL 2 BASIC5.21□□□□□ -1.58
HDDC3Q8N4P3 AC069234.2-201ENST00000541383 575 ntTSL 3 BASIC5.21□□□□□ -1.58
HDDC3Q8N4P3 AP002518.2-201ENST00000544925 393 ntTSL 5 BASIC5.21□□□□□ -1.58
HDDC3Q8N4P3 LINC02313-201ENST00000553330 550 ntTSL 2 BASIC5.21□□□□□ -1.58
HDDC3Q8N4P3 PDCD6IPP2-207ENST00000566321 1069 ntBASIC5.21□□□□□ -1.58
HDDC3Q8N4P3 AC006272.2-201ENST00000594725 163 ntBASIC5.21□□□□□ -1.58
HDDC3Q8N4P3 AL050403.2-203ENST00000603180 558 ntTSL 4 BASIC5.21□□□□□ -1.58
HDDC3Q8N4P3 AC008814.1-201ENST00000603797 406 ntBASIC5.21□□□□□ -1.58
HDDC3Q8N4P3 AC010894.2-203ENST00000606406 499 ntTSL 3 BASIC5.21□□□□□ -1.58
HDDC3Q8N4P3 AC007786.3-201ENST00000615154 596 ntBASIC5.21□□□□□ -1.58
HDDC3Q8N4P3 CCL4L2-215ENST00000620055 537 ntTSL 1 (best) BASIC5.21□□□□□ -1.58
HDDC3Q8N4P3 CCL4-203ENST00000621626 552 ntTSL 1 (best) BASIC5.21□□□□□ -1.58
HDDC3Q8N4P3 AC112694.2-201ENST00000623697 768 ntBASIC5.21□□□□□ -1.58
HDDC3Q8N4P3 PCBP1-AS1-278ENST00000625518 864 ntTSL 5 BASIC5.21□□□□□ -1.58
HDDC3Q8N4P3 LINC01358-205ENST00000625548 874 ntTSL 5 BASIC5.21□□□□□ -1.58
HDDC3Q8N4P3 RAB18-209ENST00000621805 4894 ntTSL 1 (best) BASIC5.21□□□□□ -1.58
HDDC3Q8N4P3 NPY5R-202ENST00000506953 1418 ntAPPRIS P1 BASIC5.21□□□□□ -1.58
HDDC3Q8N4P3 SLCO1A2-212ENST00000458504 2008 ntTSL 2 BASIC5.21□□□□□ -1.58
HDDC3Q8N4P3 NUP107-202ENST00000378905 2859 ntTSL 5 BASIC5.21□□□□□ -1.58
HDDC3Q8N4P3 DTNA-231ENST00000598774 2418 ntTSL 1 (best) BASIC5.21□□□□□ -1.58
HDDC3Q8N4P3 TOX-201ENST00000361421 4131 ntAPPRIS P1 TSL 1 (best) BASIC5.21□□□□□ -1.58
HDDC3Q8N4P3 LINC01676-202ENST00000435253 1849 ntTSL 1 (best) BASIC5.2□□□□□ -1.58
HDDC3Q8N4P3 OFD1P9Y-201ENST00000417699 1491 ntBASIC5.2□□□□□ -1.58
HDDC3Q8N4P3 SMNDC1-202ENST00000369603 4341 ntAPPRIS P1 TSL 1 (best) BASIC5.2□□□□□ -1.58
HDDC3Q8N4P3 ZNF573-217ENST00000590414 2225 ntAPPRIS P1 TSL 1 (best) BASIC5.2□□□□□ -1.58
HDDC3Q8N4P3 PLCXD3-201ENST00000328457 7538 ntAPPRIS P1 TSL 5 BASIC5.2□□□□□ -1.58
HDDC3Q8N4P3 ENKUR-205ENST00000615958 3294 ntTSL 1 (best) BASIC5.2□□□□□ -1.58
HDDC3Q8N4P3 CDC42BPA-204ENST00000366767 9320 ntTSL 1 (best) BASIC5.2□□□□□ -1.58
HDDC3Q8N4P3 FAM72A-201ENST00000341209 1774 ntTSL 1 (best) BASIC5.2□□□□□ -1.58
HDDC3Q8N4P3 ERVW-1-201ENST00000493463 2925 ntAPPRIS P1 BASIC5.2□□□□□ -1.58
HDDC3Q8N4P3 OR5AS1-201ENST00000313555 975 ntAPPRIS P1 BASIC5.2□□□□□ -1.58
Retrieved 100 of 98,524 protein–RNA pairs in 89.9 ms