Protein–RNA interactions for Protein: Q53GS9

USP39, U4/U6.U5 tri-snRNP-associated protein 2, humanhuman

Known RBP Predictions only

Length 565 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP39Q53GS9 ZNF701-202ENST00000391785 2634 ntAPPRIS P3 TSL 1 (best) BASIC5.95□□□□□ -1.46
USP39Q53GS9 LGALSL-202ENST00000409537 3298 ntTSL 5 BASIC5.94□□□□□ -1.46
USP39Q53GS9 SPATA31D5P-202ENST00000527857 4863 ntTSL 1 (best) BASIC5.94□□□□□ -1.46
USP39Q53GS9 ZNF638-201ENST00000264447 6505 ntAPPRIS P1 TSL 1 (best) BASIC5.94□□□□□ -1.46
USP39Q53GS9 CD226-201ENST00000280200 12319 ntAPPRIS P2 TSL 1 (best) BASIC5.94□□□□□ -1.46
USP39Q53GS9 OR5B2-202ENST00000641342 2184 ntAPPRIS P1 BASIC5.94□□□□□ -1.46
USP39Q53GS9 TRIM77-201ENST00000398290 1353 ntAPPRIS P1 TSL 5 BASIC5.94□□□□□ -1.46
USP39Q53GS9 AL365214.2-201ENST00000433684 1365 ntTSL 2 BASIC5.94□□□□□ -1.46
USP39Q53GS9 CASC19-248ENST00000641674 1356 ntBASIC5.94□□□□□ -1.46
USP39Q53GS9 SLC26A7-210ENST00000617233 5257 ntAPPRIS P1 TSL 5 BASIC5.94□□□□□ -1.46
USP39Q53GS9 KIF27-204ENST00000413982 4493 ntAPPRIS ALT2 TSL 1 (best) BASIC5.94□□□□□ -1.46
USP39Q53GS9 ADAM29-202ENST00000404450 3171 ntAPPRIS P1 TSL 1 (best) BASIC5.94□□□□□ -1.46
USP39Q53GS9 SNW1-205ENST00000555761 1855 ntTSL 2 BASIC5.94□□□□□ -1.46
USP39Q53GS9 CLUL1-205ENST00000579494 1742 ntAPPRIS P1 TSL 1 (best) BASIC5.94□□□□□ -1.46
USP39Q53GS9 PLEKHA5-202ENST00000424268 4391 ntTSL 2 BASIC5.94□□□□□ -1.46
USP39Q53GS9 SMIM21-203ENST00000584508 2554 ntAPPRIS ALT2 TSL 1 (best) BASIC5.94□□□□□ -1.46
USP39Q53GS9 EXD1-201ENST00000314992 2942 ntAPPRIS P3 TSL 1 (best) BASIC5.94□□□□□ -1.46
USP39Q53GS9 FLRT3-202ENST00000378053 4776 ntAPPRIS P1 TSL 1 (best) BASIC5.94□□□□□ -1.46
USP39Q53GS9 RIMS1-205ENST00000414192 1787 ntTSL 2 BASIC5.94□□□□□ -1.46
USP39Q53GS9 AC020656.2-201ENST00000613291 5309 ntBASIC5.94□□□□□ -1.46
USP39Q53GS9 PRDM2-206ENST00000413440 6175 ntTSL 1 (best) BASIC5.94□□□□□ -1.46
USP39Q53GS9 Y_RNA.77-201ENST00000362962 107 ntBASIC5.94□□□□□ -1.46
USP39Q53GS9 RNA5-8SP5-201ENST00000365304 152 ntBASIC5.94□□□□□ -1.46
USP39Q53GS9 AL353625.1-202ENST00000366273 571 ntBASIC5.94□□□□□ -1.46
USP39Q53GS9 RPS3AP26-201ENST00000398259 784 ntBASIC5.94□□□□□ -1.46
USP39Q53GS9 SPTLC1P2-201ENST00000407089 121 ntBASIC5.94□□□□□ -1.46
USP39Q53GS9 MTCO3P41-201ENST00000414801 328 ntBASIC5.94□□□□□ -1.46
USP39Q53GS9 AC007179.1-201ENST00000415159 438 ntTSL 3 BASIC5.94□□□□□ -1.46
USP39Q53GS9 AL138733.1-201ENST00000415477 853 ntTSL 5 BASIC5.94□□□□□ -1.46
USP39Q53GS9 AC097467.3-223ENST00000417474 449 ntTSL 3 BASIC5.94□□□□□ -1.46
USP39Q53GS9 PTP4A1P5-201ENST00000420305 455 ntBASIC5.94□□□□□ -1.46
USP39Q53GS9 SLC9B1P4-201ENST00000421957 1288 ntBASIC5.94□□□□□ -1.46
USP39Q53GS9 REREP1Y-201ENST00000422655 198 ntBASIC5.94□□□□□ -1.46
USP39Q53GS9 AL365203.2-201ENST00000423444 196 ntBASIC5.94□□□□□ -1.46
USP39Q53GS9 AL451047.1-201ENST00000424451 814 ntTSL 3 BASIC5.94□□□□□ -1.46
USP39Q53GS9 VN1R42P-201ENST00000424651 344 ntBASIC5.94□□□□□ -1.46
USP39Q53GS9 LINC02238-201ENST00000424953 557 ntTSL 5 BASIC5.94□□□□□ -1.46
USP39Q53GS9 AL031428.1-201ENST00000427154 666 ntTSL 2 BASIC5.94□□□□□ -1.46
USP39Q53GS9 RPL34P27-201ENST00000428810 349 ntBASIC5.94□□□□□ -1.46
USP39Q53GS9 GCA-203ENST00000429691 824 ntTSL 3 BASIC5.94□□□□□ -1.46
USP39Q53GS9 ISM1-AS1-201ENST00000431407 652 ntTSL 1 (best) BASIC5.94□□□□□ -1.46
USP39Q53GS9 HMGB3P24-201ENST00000433260 622 ntBASIC5.94□□□□□ -1.46
USP39Q53GS9 REREP2Y-201ENST00000439103 200 ntBASIC5.94□□□□□ -1.46
USP39Q53GS9 BX679664.2-201ENST00000439282 283 ntBASIC5.94□□□□□ -1.46
USP39Q53GS9 AL360221.1-201ENST00000445989 335 ntBASIC5.94□□□□□ -1.46
USP39Q53GS9 AL606490.1-201ENST00000452266 765 ntBASIC5.94□□□□□ -1.46
USP39Q53GS9 AC104164.1-201ENST00000460282 590 ntBASIC5.94□□□□□ -1.46
USP39Q53GS9 RN7SL352P-201ENST00000466002 277 ntBASIC5.94□□□□□ -1.46
USP39Q53GS9 OR2AO1P-201ENST00000476497 403 ntBASIC5.94□□□□□ -1.46
USP39Q53GS9 PFN1P6-201ENST00000476786 399 ntBASIC5.94□□□□□ -1.46
USP39Q53GS9 RPS12P31-201ENST00000491419 398 ntBASIC5.94□□□□□ -1.46
USP39Q53GS9 AC112206.2-204ENST00000504068 793 ntTSL 3 BASIC5.94□□□□□ -1.46
USP39Q53GS9 AC006296.2-201ENST00000507932 764 ntTSL 3 BASIC5.94□□□□□ -1.46
USP39Q53GS9 AC113349.1-201ENST00000512105 583 ntTSL 4 BASIC5.94□□□□□ -1.46
USP39Q53GS9 AC008549.1-201ENST00000512900 643 ntBASIC5.94□□□□□ -1.46
USP39Q53GS9 THUMPD3-AS1-210ENST00000519043 1115 ntTSL 3 BASIC5.94□□□□□ -1.46
USP39Q53GS9 MINCR-206ENST00000524335 499 ntTSL 2 BASIC5.94□□□□□ -1.46
USP39Q53GS9 AC007115.1-201ENST00000546853 234 ntBASIC5.94□□□□□ -1.46
USP39Q53GS9 AC008126.1-201ENST00000549019 480 ntBASIC5.94□□□□□ -1.46
USP39Q53GS9 CYB5AP5-201ENST00000549779 389 ntBASIC5.94□□□□□ -1.46
USP39Q53GS9 AC055855.2-201ENST00000565993 500 ntTSL 2 BASIC5.94□□□□□ -1.46
USP39Q53GS9 AC010761.5-201ENST00000579468 287 ntTSL 3 BASIC5.94□□□□□ -1.46
USP39Q53GS9 MIR1269B-201ENST00000580405 75 ntBASIC5.94□□□□□ -1.46
USP39Q53GS9 ZNF415P1-201ENST00000582279 1166 ntBASIC5.94□□□□□ -1.46
USP39Q53GS9 MIR4260-201ENST00000583107 67 ntBASIC5.94□□□□□ -1.46
USP39Q53GS9 AC069366.1-201ENST00000583159 838 ntBASIC5.94□□□□□ -1.46
USP39Q53GS9 AC012588.1-201ENST00000583852 358 ntTSL 3 BASIC5.94□□□□□ -1.46
USP39Q53GS9 CT45A1-202ENST00000594565 1007 ntAPPRIS P1 TSL 1 (best) BASIC5.94□□□□□ -1.46
USP39Q53GS9 Z98949.1-204ENST00000595102 731 ntTSL 5 BASIC5.94□□□□□ -1.46
USP39Q53GS9 ZNF649-AS1-201ENST00000600329 579 ntTSL 4 BASIC5.94□□□□□ -1.46
USP39Q53GS9 AP001981.2-201ENST00000603241 418 ntBASIC5.94□□□□□ -1.46
USP39Q53GS9 AP000811.1-201ENST00000603803 651 ntBASIC5.94□□□□□ -1.46
USP39Q53GS9 Z82195.1-201ENST00000604558 398 ntBASIC5.94□□□□□ -1.46
USP39Q53GS9 AC124312.4-201ENST00000605533 310 ntBASIC5.94□□□□□ -1.46
USP39Q53GS9 AC004890.3-201ENST00000605566 1095 ntBASIC5.94□□□□□ -1.46
USP39Q53GS9 AL096803.3-201ENST00000609032 532 ntBASIC5.94□□□□□ -1.46
USP39Q53GS9 Z98949.1-207ENST00000609157 814 ntTSL 5 BASIC5.94□□□□□ -1.46
USP39Q53GS9 AC009163.6-201ENST00000612367 342 ntBASIC5.94□□□□□ -1.46
USP39Q53GS9 AC008115.3-201ENST00000614874 549 ntBASIC5.94□□□□□ -1.46
USP39Q53GS9 AL158062.1-201ENST00000619632 745 ntBASIC5.94□□□□□ -1.46
USP39Q53GS9 CU639417.4-201ENST00000623928 207 ntBASIC5.94□□□□□ -1.46
USP39Q53GS9 ELAVL4-202ENST00000371819 2467 ntAPPRIS ALT1 TSL 2 BASIC5.94□□□□□ -1.46
USP39Q53GS9 AC087258.1-203ENST00000545400 1629 ntTSL 2 BASIC5.94□□□□□ -1.46
USP39Q53GS9 STAU2-210ENST00000521210 1950 ntTSL 2 BASIC5.94□□□□□ -1.46
USP39Q53GS9 AL050403.1-201ENST00000448859 2006 ntTSL 1 (best) BASIC5.94□□□□□ -1.46
USP39Q53GS9 AC117409.1-201ENST00000470499 1310 ntBASIC5.94□□□□□ -1.46
USP39Q53GS9 ABI2-204ENST00000295851 22209 ntTSL 1 (best) BASIC5.94□□□□□ -1.46
USP39Q53GS9 RNASEL-202ENST00000539397 4046 ntTSL 2 BASIC5.94□□□□□ -1.46
USP39Q53GS9 ORC4-214ENST00000535373 6710 ntAPPRIS P1 TSL 5 BASIC5.94□□□□□ -1.46
USP39Q53GS9 FILIP1L-201ENST00000331335 4219 ntAPPRIS P1 TSL 1 (best) BASIC5.94□□□□□ -1.46
USP39Q53GS9 RYR3-201ENST00000389232 15552 ntAPPRIS ALT2 TSL 5 BASIC5.93□□□□□ -1.46
USP39Q53GS9 WDR12-201ENST00000261015 8100 ntAPPRIS P1 TSL 1 (best) BASIC5.93□□□□□ -1.46
USP39Q53GS9 PALMD-203ENST00000605497 1942 ntTSL 1 (best) BASIC5.93□□□□□ -1.46
USP39Q53GS9 AC007342.5-201ENST00000571340 2142 ntBASIC5.93□□□□□ -1.46
USP39Q53GS9 ECM1P2-201ENST00000503354 1577 ntBASIC5.93□□□□□ -1.46
USP39Q53GS9 ADAM18-202ENST00000379866 2314 ntAPPRIS ALT2 TSL 1 (best) BASIC5.93□□□□□ -1.46
USP39Q53GS9 AP005432.1-201ENST00000580891 3485 ntBASIC5.93□□□□□ -1.46
USP39Q53GS9 ROR1-AS1-202ENST00000424995 2189 ntTSL 2 BASIC5.93□□□□□ -1.46
USP39Q53GS9 RBM48-202ENST00000481551 4093 ntTSL 1 (best) BASIC5.93□□□□□ -1.46
USP39Q53GS9 LINGO2-204ENST00000613945 2981 ntAPPRIS P1 TSL 5 BASIC5.93□□□□□ -1.46
Retrieved 100 of 98,524 protein–RNA pairs in 95.4 ms