Protein–RNA interactions for Protein: Q53GG5

PDLIM3, PDZ and LIM domain protein 3, humanhuman

Predicted RBP Predictions only

Length 364 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM3Q53GG5 LINC01630-202ENST00000578152 3188 ntTSL 2 BASIC4.63□□□□□ -1.67
PDLIM3Q53GG5 ZNF782-208ENST00000535338 3296 ntAPPRIS P1 TSL 3 BASIC4.63□□□□□ -1.67
PDLIM3Q53GG5 FILIP1-202ENST00000370020 4051 ntTSL 1 (best) BASIC4.62□□□□□ -1.67
PDLIM3Q53GG5 LINC01619-207ENST00000551843 2205 ntTSL 1 (best) BASIC4.62□□□□□ -1.67
PDLIM3Q53GG5 AC007938.2-201ENST00000604666 2634 ntBASIC4.62□□□□□ -1.67
PDLIM3Q53GG5 ZNF645-201ENST00000323684 1519 ntAPPRIS P1 BASIC4.62□□□□□ -1.67
PDLIM3Q53GG5 USP15-201ENST00000280377 4748 ntAPPRIS ALT1 TSL 1 (best) BASIC4.62□□□□□ -1.67
PDLIM3Q53GG5 BMPR1APS1-201ENST00000403332 1598 ntBASIC4.62□□□□□ -1.67
PDLIM3Q53GG5 AC092079.1-201ENST00000558620 1985 ntBASIC4.62□□□□□ -1.67
PDLIM3Q53GG5 RLIM-201ENST00000332687 8317 ntAPPRIS P1 TSL 1 (best) BASIC4.62□□□□□ -1.67
PDLIM3Q53GG5 AC079601.1-201ENST00000547824 2791 ntTSL 1 (best) BASIC4.62□□□□□ -1.67
PDLIM3Q53GG5 MROH9-202ENST00000367759 3165 ntAPPRIS ALT2 TSL 5 BASIC4.62□□□□□ -1.67
PDLIM3Q53GG5 CASC1-202ENST00000354189 2445 ntAPPRIS ALT2 TSL 1 (best) BASIC4.62□□□□□ -1.67
PDLIM3Q53GG5 MGST1-201ENST00000010404 901 ntAPPRIS P1 TSL 5 BASIC4.62□□□□□ -1.67
PDLIM3Q53GG5 WFDC8-202ENST00000357199 1268 ntAPPRIS P1 TSL 1 (best) BASIC4.62□□□□□ -1.67
PDLIM3Q53GG5 TRAJ38-201ENST00000390499 62 ntAPPRIS P1 BASIC4.62□□□□□ -1.67
PDLIM3Q53GG5 AC093719.1-202ENST00000392735 373 ntBASIC4.62□□□□□ -1.67
PDLIM3Q53GG5 MGST1-203ENST00000396207 909 ntAPPRIS P1 TSL 1 (best) BASIC4.62□□□□□ -1.67
PDLIM3Q53GG5 CXCL8-202ENST00000401931 700 ntAPPRIS ALT1 TSL 1 (best) BASIC4.62□□□□□ -1.67
PDLIM3Q53GG5 AL034374.1-201ENST00000406329 351 ntBASIC4.62□□□□□ -1.67
PDLIM3Q53GG5 AC003092.2-201ENST00000411946 446 ntTSL 2 BASIC4.62□□□□□ -1.67
PDLIM3Q53GG5 AL445190.1-201ENST00000416448 288 ntTSL 5 BASIC4.62□□□□□ -1.67
PDLIM3Q53GG5 AL590432.1-201ENST00000420071 566 ntTSL 2 BASIC4.62□□□□□ -1.67
PDLIM3Q53GG5 AL391704.3-201ENST00000425365 831 ntTSL 3 BASIC4.62□□□□□ -1.67
PDLIM3Q53GG5 AL354714.4-201ENST00000427339 575 ntTSL 3 BASIC4.62□□□□□ -1.67
PDLIM3Q53GG5 SPATA13-AS1-201ENST00000430733 433 ntTSL 3 BASIC4.62□□□□□ -1.67
PDLIM3Q53GG5 RNFT1P2-201ENST00000443064 757 ntBASIC4.62□□□□□ -1.67
PDLIM3Q53GG5 CCDC17-203ENST00000445048 443 ntAPPRIS ALT2 TSL 1 (best) BASIC4.62□□□□□ -1.67
PDLIM3Q53GG5 AL133260.2-201ENST00000445833 396 ntTSL 3 BASIC4.62□□□□□ -1.67
PDLIM3Q53GG5 PTMAP3-201ENST00000447474 330 ntBASIC4.62□□□□□ -1.67
PDLIM3Q53GG5 OR7E116P-201ENST00000448529 957 ntBASIC4.62□□□□□ -1.67
PDLIM3Q53GG5 AC079760.2-201ENST00000449361 681 ntTSL 5 BASIC4.62□□□□□ -1.67
PDLIM3Q53GG5 RPL7P61-201ENST00000451721 751 ntBASIC4.62□□□□□ -1.67
PDLIM3Q53GG5 RPL23AP23-201ENST00000452590 471 ntBASIC4.62□□□□□ -1.67
PDLIM3Q53GG5 AP000547.1-201ENST00000454360 617 ntBASIC4.62□□□□□ -1.67
PDLIM3Q53GG5 LINC01448-201ENST00000455947 1171 ntTSL 1 (best) BASIC4.62□□□□□ -1.67
PDLIM3Q53GG5 AC138866.2-201ENST00000508650 584 ntBASIC4.62□□□□□ -1.67
PDLIM3Q53GG5 C1GALT1P2-201ENST00000510813 1104 ntBASIC4.62□□□□□ -1.67
PDLIM3Q53GG5 RNU6-1308P-201ENST00000516817 103 ntBASIC4.62□□□□□ -1.67
PDLIM3Q53GG5 AP003696.1-201ENST00000519337 770 ntTSL 3 BASIC4.62□□□□□ -1.67
PDLIM3Q53GG5 AC083923.2-201ENST00000519880 574 ntTSL 4 BASIC4.62□□□□□ -1.67
PDLIM3Q53GG5 AC013644.1-202ENST00000523166 499 ntTSL 2 BASIC4.62□□□□□ -1.67
PDLIM3Q53GG5 SNHG1-218ENST00000541615 748 ntTSL 5 BASIC4.62□□□□□ -1.67
PDLIM3Q53GG5 AC139697.1-201ENST00000548429 745 ntBASIC4.62□□□□□ -1.67
PDLIM3Q53GG5 ETFRF1-208ENST00000556402 874 ntTSL 3 BASIC4.62□□□□□ -1.67
PDLIM3Q53GG5 AC074050.3-201ENST00000569175 441 ntTSL 4 BASIC4.62□□□□□ -1.67
PDLIM3Q53GG5 AC100872.1-201ENST00000577765 501 ntTSL 5 BASIC4.62□□□□□ -1.67
PDLIM3Q53GG5 AL157938.2-205ENST00000586290 891 ntTSL 5 BASIC4.62□□□□□ -1.67
PDLIM3Q53GG5 AC068020.1-201ENST00000594215 661 ntBASIC4.62□□□□□ -1.67
PDLIM3Q53GG5 AC130352.1-201ENST00000602979 661 ntBASIC4.62□□□□□ -1.67
PDLIM3Q53GG5 AC026741.1-201ENST00000605892 482 ntBASIC4.62□□□□□ -1.67
PDLIM3Q53GG5 AL512329.2-201ENST00000607350 548 ntBASIC4.62□□□□□ -1.67
PDLIM3Q53GG5 ZNF630-AS1-201ENST00000614448 397 ntTSL 3 BASIC4.62□□□□□ -1.67
PDLIM3Q53GG5 AC007204.2-201ENST00000615022 616 ntBASIC4.62□□□□□ -1.67
PDLIM3Q53GG5 AL034549.1-201ENST00000615120 578 ntTSL 2 BASIC4.62□□□□□ -1.67
PDLIM3Q53GG5 AC007389.5-201ENST00000629214 744 ntTSL 5 BASIC4.62□□□□□ -1.67
PDLIM3Q53GG5 CASC19-264ENST00000641912 1184 ntBASIC4.62□□□□□ -1.67
PDLIM3Q53GG5 NBPF10-202ENST00000617010 11630 ntTSL 5 BASIC4.62□□□□□ -1.67
PDLIM3Q53GG5 SMNDC1-202ENST00000369603 4341 ntAPPRIS P1 TSL 1 (best) BASIC4.62□□□□□ -1.67
PDLIM3Q53GG5 AC011287.1-206ENST00000638774 2642 ntTSL 5 BASIC4.62□□□□□ -1.67
PDLIM3Q53GG5 ZNF345-215ENST00000614069 3103 ntAPPRIS P1 TSL 3 BASIC4.62□□□□□ -1.67
PDLIM3Q53GG5 AP001029.2-203ENST00000589795 4910 ntBASIC4.62□□□□□ -1.67
PDLIM3Q53GG5 RALGAPA1-204ENST00000553892 6271 ntTSL 5 BASIC4.62□□□□□ -1.67
PDLIM3Q53GG5 VPS50-202ENST00000305866 3613 ntAPPRIS P1 TSL 1 (best) BASIC4.62□□□□□ -1.67
PDLIM3Q53GG5 PRG4-203ENST00000367485 4765 ntAPPRIS ALT2 TSL 5 BASIC4.62□□□□□ -1.67
PDLIM3Q53GG5 C1orf140-202ENST00000439004 4340 ntTSL 1 (best) BASIC4.62□□□□□ -1.67
PDLIM3Q53GG5 PDE7A-201ENST00000379419 2425 ntAPPRIS P3 TSL 2 BASIC4.62□□□□□ -1.67
PDLIM3Q53GG5 HMCN1-201ENST00000271588 18208 ntAPPRIS P1 TSL 1 (best) BASIC4.61□□□□□ -1.67
PDLIM3Q53GG5 IPCEF1-210ENST00000519344 1621 ntAPPRIS ALT2 TSL 5 BASIC4.61□□□□□ -1.67
PDLIM3Q53GG5 AC079298.1-201ENST00000625026 1619 ntBASIC4.61□□□□□ -1.67
PDLIM3Q53GG5 ADAM7-202ENST00000380789 3358 ntAPPRIS ALT2 TSL 5 BASIC4.61□□□□□ -1.67
PDLIM3Q53GG5 ZEB1-219ENST00000560721 3368 ntAPPRIS ALT2 TSL 2 BASIC4.61□□□□□ -1.67
PDLIM3Q53GG5 LMNTD1-207ENST00000539744 1729 ntAPPRIS ALT2 TSL 1 (best) BASIC4.61□□□□□ -1.67
PDLIM3Q53GG5 KLHL4-202ENST00000373119 5818 ntAPPRIS P1 TSL 1 (best) BASIC4.61□□□□□ -1.67
PDLIM3Q53GG5 WDR17-201ENST00000280190 4705 ntAPPRIS P3 TSL 1 (best) BASIC4.61□□□□□ -1.67
PDLIM3Q53GG5 PRPF4B-201ENST00000337659 4415 ntAPPRIS P1 TSL 1 (best) BASIC4.61□□□□□ -1.67
PDLIM3Q53GG5 TAS2R16-201ENST00000249284 997 ntAPPRIS P1 BASIC4.61□□□□□ -1.67
PDLIM3Q53GG5 BPY2-201ENST00000331070 1206 ntAPPRIS P5 TSL 1 (best) BASIC4.61□□□□□ -1.67
PDLIM3Q53GG5 SPANXN1-201ENST00000370493 1276 ntAPPRIS P1 TSL 1 (best) BASIC4.61□□□□□ -1.67
PDLIM3Q53GG5 TRPM3-206ENST00000377097 554 ntTSL 2 BASIC4.61□□□□□ -1.67
PDLIM3Q53GG5 BPY2C-201ENST00000382287 1206 ntAPPRIS P5 TSL 1 (best) BASIC4.61□□□□□ -1.67
PDLIM3Q53GG5 BPY2B-201ENST00000382392 1206 ntAPPRIS P5 TSL 1 (best) BASIC4.61□□□□□ -1.67
PDLIM3Q53GG5 RNA5SP187-201ENST00000384400 119 ntBASIC4.61□□□□□ -1.67
PDLIM3Q53GG5 RNU6-244P-201ENST00000391028 104 ntBASIC4.61□□□□□ -1.67
PDLIM3Q53GG5 RNU4-27P-201ENST00000410889 139 ntBASIC4.61□□□□□ -1.67
PDLIM3Q53GG5 GPS2P1-201ENST00000411761 986 ntBASIC4.61□□□□□ -1.67
PDLIM3Q53GG5 LINC01359-201ENST00000415842 1157 ntTSL 2 BASIC4.61□□□□□ -1.67
PDLIM3Q53GG5 BMS1P17-202ENST00000416720 316 ntBASIC4.61□□□□□ -1.67
PDLIM3Q53GG5 MTND2P9-201ENST00000422293 931 ntBASIC4.61□□□□□ -1.67
PDLIM3Q53GG5 HSFY7P-201ENST00000432672 318 ntBASIC4.61□□□□□ -1.67
PDLIM3Q53GG5 AC011891.1-201ENST00000437088 432 ntTSL 3 BASIC4.61□□□□□ -1.67
PDLIM3Q53GG5 HSFY8P-201ENST00000437934 318 ntBASIC4.61□□□□□ -1.67
PDLIM3Q53GG5 AC007327.2-201ENST00000440788 457 ntTSL 3 BASIC4.61□□□□□ -1.67
PDLIM3Q53GG5 CNOT7P2-201ENST00000441051 832 ntBASIC4.61□□□□□ -1.67
PDLIM3Q53GG5 AL357052.1-201ENST00000443504 381 ntTSL 3 BASIC4.61□□□□□ -1.67
PDLIM3Q53GG5 CEACAMP7-201ENST00000444105 496 ntBASIC4.61□□□□□ -1.67
PDLIM3Q53GG5 AC025947.1-201ENST00000447943 299 ntTSL 5 BASIC4.61□□□□□ -1.67
PDLIM3Q53GG5 HSFY5P-201ENST00000453726 309 ntBASIC4.61□□□□□ -1.67
PDLIM3Q53GG5 ATP5J-207ENST00000457143 589 ntTSL 2 BASIC4.61□□□□□ -1.67
PDLIM3Q53GG5 RN7SL172P-201ENST00000460535 303 ntBASIC4.61□□□□□ -1.67
Retrieved 100 of 98,524 protein–RNA pairs in 119.4 ms