Protein–RNA interactions for Protein: Q2UY09

COL28A1, Collagen alpha-1(XXVIII) chain, humanhuman

Predictions only

Length 1,125 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1Q2UY09 INPP4B-206ENST00000506217 673 ntTSL 1 (best) BASIC5.28□□□□□ -1.56
COL28A1Q2UY09 AC105384.2-201ENST00000508433 640 ntBASIC5.28□□□□□ -1.56
COL28A1Q2UY09 MTATP6P9-201ENST00000515039 680 ntBASIC5.28□□□□□ -1.56
COL28A1Q2UY09 NSMCE2-202ENST00000517315 996 ntTSL 3 BASIC5.28□□□□□ -1.56
COL28A1Q2UY09 AC087855.1-201ENST00000518178 430 ntTSL 3 BASIC5.28□□□□□ -1.56
COL28A1Q2UY09 AF117829.1-210ENST00000523859 696 ntTSL 3 BASIC5.28□□□□□ -1.56
COL28A1Q2UY09 AC104248.1-202ENST00000524134 486 ntTSL 5 BASIC5.28□□□□□ -1.56
COL28A1Q2UY09 AC109635.6-201ENST00000525487 1113 ntBASIC5.28□□□□□ -1.56
COL28A1Q2UY09 AP001318.3-202ENST00000528876 509 ntTSL 3 BASIC5.28□□□□□ -1.56
COL28A1Q2UY09 AC090680.2-201ENST00000550279 742 ntTSL 3 BASIC5.28□□□□□ -1.56
COL28A1Q2UY09 TIMM9-203ENST00000555061 598 ntAPPRIS P1 TSL 1 (best) BASIC5.28□□□□□ -1.56
COL28A1Q2UY09 AC106730.2-201ENST00000566641 540 ntBASIC5.28□□□□□ -1.56
COL28A1Q2UY09 AC106729.1-201ENST00000567777 466 ntTSL 3 BASIC5.28□□□□□ -1.56
COL28A1Q2UY09 AC104072.1-201ENST00000568817 668 ntBASIC5.28□□□□□ -1.56
COL28A1Q2UY09 ZNF836-203ENST00000597065 808 ntTSL 1 (best) BASIC5.28□□□□□ -1.56
COL28A1Q2UY09 AL513327.3-201ENST00000602618 469 ntBASIC5.28□□□□□ -1.56
COL28A1Q2UY09 AC105148.1-201ENST00000604961 409 ntBASIC5.28□□□□□ -1.56
COL28A1Q2UY09 AL133481.2-203ENST00000607558 139 ntBASIC5.28□□□□□ -1.56
COL28A1Q2UY09 AL391834.1-201ENST00000609609 560 ntBASIC5.28□□□□□ -1.56
COL28A1Q2UY09 AC018926.1-201ENST00000616335 435 ntBASIC5.28□□□□□ -1.56
COL28A1Q2UY09 AC005618.4-201ENST00000625053 554 ntBASIC5.28□□□□□ -1.56
COL28A1Q2UY09 METTL8-218ENST00000638989 876 ntTSL 5 BASIC5.28□□□□□ -1.56
COL28A1Q2UY09 METTL8-219ENST00000640734 726 ntTSL 2 BASIC5.28□□□□□ -1.56
COL28A1Q2UY09 GABRG2-203ENST00000414552 3927 ntTSL 1 (best) BASIC5.28□□□□□ -1.56
COL28A1Q2UY09 MECOM-217ENST00000494292 3939 ntAPPRIS ALT2 TSL 5 BASIC5.28□□□□□ -1.56
COL28A1Q2UY09 AC007750.1-202ENST00000418968 4098 ntTSL 5 BASIC5.28□□□□□ -1.56
COL28A1Q2UY09 ESRRG-204ENST00000361525 5363 ntAPPRIS P1 TSL 5 BASIC5.28□□□□□ -1.56
COL28A1Q2UY09 IFRD1-217ENST00000621379 3232 ntTSL 2 BASIC5.28□□□□□ -1.56
COL28A1Q2UY09 CEP85L-201ENST00000360290 1736 ntTSL 1 (best) BASIC5.28□□□□□ -1.56
COL28A1Q2UY09 AL359538.1-201ENST00000453498 1710 ntTSL 1 (best) BASIC5.28□□□□□ -1.56
COL28A1Q2UY09 PPEF1-201ENST00000349874 2687 ntTSL 5 BASIC5.28□□□□□ -1.56
COL28A1Q2UY09 AC083899.2-201ENST00000423285 1376 ntBASIC5.28□□□□□ -1.56
COL28A1Q2UY09 SCN2A-203ENST00000375437 8792 ntAPPRIS ALT1 TSL 5 BASIC5.28□□□□□ -1.56
COL28A1Q2UY09 MROH2B-201ENST00000399564 5239 ntAPPRIS P1 TSL 1 (best) BASIC5.28□□□□□ -1.56
COL28A1Q2UY09 AL161911.1-202ENST00000464488 1534 ntAPPRIS P1 TSL 5 BASIC5.28□□□□□ -1.56
COL28A1Q2UY09 LCMT1-AS2-202ENST00000565214 5666 ntBASIC5.28□□□□□ -1.56
COL28A1Q2UY09 HYKK-206ENST00000569878 4097 ntAPPRIS P1 TSL 5 BASIC5.28□□□□□ -1.56
COL28A1Q2UY09 PTPRD-206ENST00000397617 8248 ntTSL 5 BASIC5.28□□□□□ -1.56
COL28A1Q2UY09 DSC2-201ENST00000251081 4826 ntTSL 1 (best) BASIC5.27□□□□□ -1.57
COL28A1Q2UY09 OR9K1P-202ENST00000641111 3217 ntBASIC5.27□□□□□ -1.57
COL28A1Q2UY09 TBCK-205ENST00000432496 3362 ntAPPRIS P1 TSL 2 BASIC5.27□□□□□ -1.57
COL28A1Q2UY09 MTND4P9-201ENST00000507819 1346 ntBASIC5.27□□□□□ -1.57
COL28A1Q2UY09 PPP1R9A-206ENST00000433360 5369 ntTSL 1 (best) BASIC5.27□□□□□ -1.57
COL28A1Q2UY09 EXO1-208ENST00000518483 2899 ntAPPRIS ALT2 TSL 1 (best) BASIC5.27□□□□□ -1.57
COL28A1Q2UY09 SLCO1C1-208ENST00000545102 2868 ntTSL 2 BASIC5.27□□□□□ -1.57
COL28A1Q2UY09 UGT2B26P-201ENST00000508672 1613 ntBASIC5.27□□□□□ -1.57
COL28A1Q2UY09 ADH6-202ENST00000394897 3337 ntTSL 2 BASIC5.27□□□□□ -1.57
COL28A1Q2UY09 ARFGEF2-201ENST00000371917 8852 ntAPPRIS P1 TSL 1 (best) BASIC5.27□□□□□ -1.57
COL28A1Q2UY09 PTPRD-213ENST00000537002 8224 ntTSL 1 (best) BASIC5.27□□□□□ -1.57
COL28A1Q2UY09 GAS2L3-203ENST00000539410 2229 ntAPPRIS P1 TSL 2 BASIC5.27□□□□□ -1.57
COL28A1Q2UY09 ADAM21-201ENST00000603540 2658 ntAPPRIS P1 TSL 3 BASIC5.27□□□□□ -1.57
COL28A1Q2UY09 EDA2R-203ENST00000396050 3429 ntAPPRIS ALT2 TSL 5 BASIC5.27□□□□□ -1.57
COL28A1Q2UY09 RABL3-201ENST00000273375 3883 ntAPPRIS P1 TSL 1 (best) BASIC5.27□□□□□ -1.57
COL28A1Q2UY09 MECOM-201ENST00000264674 4900 ntTSL 1 (best) BASIC5.27□□□□□ -1.57
COL28A1Q2UY09 RNU6-252P-201ENST00000363232 107 ntBASIC5.27□□□□□ -1.57
COL28A1Q2UY09 CRYZ-203ENST00000370871 1292 ntTSL 1 (best) BASIC5.27□□□□□ -1.57
COL28A1Q2UY09 SSX1-201ENST00000376919 1298 ntAPPRIS P1 TSL 1 (best) BASIC5.27□□□□□ -1.57
COL28A1Q2UY09 SIRPD-201ENST00000381621 823 ntAPPRIS ALT2 TSL 3 BASIC5.27□□□□□ -1.57
COL28A1Q2UY09 HMGB1P10-201ENST00000395823 563 ntBASIC5.27□□□□□ -1.57
COL28A1Q2UY09 RNF212B-201ENST00000399905 1071 ntTSL 5 BASIC5.27□□□□□ -1.57
COL28A1Q2UY09 BTBD9-203ENST00000403056 1155 ntTSL 5 BASIC5.27□□□□□ -1.57
COL28A1Q2UY09 AC092675.1-201ENST00000409490 561 ntTSL 4 BASIC5.27□□□□□ -1.57
COL28A1Q2UY09 AL158050.1-201ENST00000416077 457 ntBASIC5.27□□□□□ -1.57
COL28A1Q2UY09 AL590139.1-201ENST00000416267 400 ntBASIC5.27□□□□□ -1.57
COL28A1Q2UY09 KCNMA1-AS3-201ENST00000418515 701 ntTSL 3 BASIC5.27□□□□□ -1.57
COL28A1Q2UY09 ERMN-209ENST00000420719 1246 ntTSL 2 BASIC5.27□□□□□ -1.57
COL28A1Q2UY09 SEC63P1-201ENST00000425785 1258 ntBASIC5.27□□□□□ -1.57
COL28A1Q2UY09 AL451042.1-201ENST00000426353 544 ntTSL 3 BASIC5.27□□□□□ -1.57
COL28A1Q2UY09 DNAJC19P7-201ENST00000428811 344 ntBASIC5.27□□□□□ -1.57
COL28A1Q2UY09 TEX41-206ENST00000432608 661 ntTSL 3 BASIC5.27□□□□□ -1.57
COL28A1Q2UY09 Z82198.2-201ENST00000434741 567 ntTSL 4 BASIC5.27□□□□□ -1.57
COL28A1Q2UY09 RAPH1-209ENST00000439222 1854 ntAPPRIS ALT2 TSL 5 BASIC5.27□□□□□ -1.57
COL28A1Q2UY09 LMO3-209ENST00000447609 3365 ntAPPRIS P1 TSL 1 (best) BASIC5.27□□□□□ -1.57
COL28A1Q2UY09 RPL31P44-201ENST00000447680 377 ntBASIC5.27□□□□□ -1.57
COL28A1Q2UY09 AC096741.1-201ENST00000472250 846 ntBASIC5.27□□□□□ -1.57
COL28A1Q2UY09 SETP6-201ENST00000479329 568 ntBASIC5.27□□□□□ -1.57
COL28A1Q2UY09 IGLV2-34-201ENST00000490007 283 ntBASIC5.27□□□□□ -1.57
COL28A1Q2UY09 C1orf143-202ENST00000491260 813 ntTSL 3 BASIC5.27□□□□□ -1.57
COL28A1Q2UY09 AC087667.1-201ENST00000500180 1422 ntTSL 1 (best) BASIC5.27□□□□□ -1.57
COL28A1Q2UY09 AC096576.3-201ENST00000505528 721 ntTSL 5 BASIC5.27□□□□□ -1.57
COL28A1Q2UY09 AC010230.1-202ENST00000506265 592 ntTSL 5 BASIC5.27□□□□□ -1.57
COL28A1Q2UY09 LINC02271-202ENST00000506379 596 ntTSL 4 BASIC5.27□□□□□ -1.57
COL28A1Q2UY09 GLUD1P3-202ENST00000508551 200 ntBASIC5.27□□□□□ -1.57
COL28A1Q2UY09 AC122710.1-201ENST00000510622 553 ntTSL 5 BASIC5.27□□□□□ -1.57
COL28A1Q2UY09 AC112198.4-201ENST00000515450 351 ntBASIC5.27□□□□□ -1.57
COL28A1Q2UY09 RNA5SP230-201ENST00000517039 122 ntBASIC5.27□□□□□ -1.57
COL28A1Q2UY09 FTH1P11-201ENST00000517577 551 ntBASIC5.27□□□□□ -1.57
COL28A1Q2UY09 AC139365.2-201ENST00000517972 253 ntBASIC5.27□□□□□ -1.57
COL28A1Q2UY09 IGKV2D-10-201ENST00000520194 281 ntBASIC5.27□□□□□ -1.57
COL28A1Q2UY09 SOX5P1-201ENST00000524155 1127 ntBASIC5.27□□□□□ -1.57
COL28A1Q2UY09 AKAP7-209ENST00000541650 2008 ntTSL 5 BASIC5.27□□□□□ -1.57
COL28A1Q2UY09 AC009396.1-201ENST00000553628 1079 ntTSL 2 BASIC5.27□□□□□ -1.57
COL28A1Q2UY09 AC091544.7-201ENST00000554000 240 ntTSL 3 BASIC5.27□□□□□ -1.57
COL28A1Q2UY09 LYRM1-211ENST00000569023 769 ntAPPRIS P1 TSL 3 BASIC5.27□□□□□ -1.57
COL28A1Q2UY09 DHFRP1-201ENST00000579682 559 ntBASIC5.27□□□□□ -1.57
COL28A1Q2UY09 AC005034.4-201ENST00000603612 899 ntBASIC5.27□□□□□ -1.57
COL28A1Q2UY09 RDM1-226ENST00000619828 687 ntTSL 1 (best) BASIC5.27□□□□□ -1.57
COL28A1Q2UY09 OR10A6-202ENST00000623991 945 ntAPPRIS P1 BASIC5.27□□□□□ -1.57
COL28A1Q2UY09 AC087632.1-216ENST00000625619 487 ntAPPRIS P1 TSL 3 BASIC5.27□□□□□ -1.57
COL28A1Q2UY09 DLGAP1-AS2-202ENST00000573177 1388 ntBASIC5.27□□□□□ -1.57
Retrieved 100 of 98,524 protein–RNA pairs in 81.3 ms