Protein–RNA interactions for Protein: P55318

FOXA3, Hepatocyte nuclear factor 3-gamma, humanhuman

Predicted RBP Predictions only

Length 350 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA3P55318 AC008758.3-201ENST00000507003 1829 ntBASIC3.58□□□□□ -1.84
FOXA3P55318 EMSY-215ENST00000533248 3798 ntTSL 1 (best) BASIC3.58□□□□□ -1.84
FOXA3P55318 OR2M7-201ENST00000317965 939 ntAPPRIS P1 BASIC3.58□□□□□ -1.84
FOXA3P55318 CENPW-203ENST00000368328 750 ntAPPRIS P1 TSL 1 (best) BASIC3.58□□□□□ -1.84
FOXA3P55318 MIR708-201ENST00000390708 88 ntBASIC3.58□□□□□ -1.84
FOXA3P55318 RN7SKP114-201ENST00000410327 279 ntBASIC3.58□□□□□ -1.84
FOXA3P55318 RNA5SP345-201ENST00000410646 108 ntBASIC3.58□□□□□ -1.84
FOXA3P55318 RN7SKP216-201ENST00000411050 312 ntBASIC3.58□□□□□ -1.84
FOXA3P55318 AL133480.1-201ENST00000411561 638 ntTSL 2 BASIC3.58□□□□□ -1.84
FOXA3P55318 EEF1B2P8-201ENST00000414101 671 ntBASIC3.58□□□□□ -1.84
FOXA3P55318 LINC01980-201ENST00000414382 543 ntTSL 4 BASIC3.58□□□□□ -1.84
FOXA3P55318 AC007389.1-203ENST00000414811 556 ntTSL 4 BASIC3.58□□□□□ -1.84
FOXA3P55318 Z74021.1-201ENST00000423610 407 ntBASIC3.58□□□□□ -1.84
FOXA3P55318 AC108075.1-201ENST00000424692 529 ntBASIC3.58□□□□□ -1.84
FOXA3P55318 IPMKP1-201ENST00000425988 855 ntBASIC3.58□□□□□ -1.84
FOXA3P55318 AC060234.3-201ENST00000430438 559 ntTSL 5 BASIC3.58□□□□□ -1.84
FOXA3P55318 AL357520.1-201ENST00000441557 453 ntBASIC3.58□□□□□ -1.84
FOXA3P55318 AC011753.3-201ENST00000443436 406 ntBASIC3.58□□□□□ -1.84
FOXA3P55318 AL009050.1-201ENST00000445278 426 ntTSL 3 BASIC3.58□□□□□ -1.84
FOXA3P55318 AC006019.3-201ENST00000446335 698 ntTSL 3 BASIC3.58□□□□□ -1.84
FOXA3P55318 AC006967.1-201ENST00000467608 589 ntBASIC3.58□□□□□ -1.84
FOXA3P55318 AC092957.1-201ENST00000473299 570 ntTSL 4 BASIC3.58□□□□□ -1.84
FOXA3P55318 LINC02040-201ENST00000481004 556 ntTSL 5 BASIC3.58□□□□□ -1.84
FOXA3P55318 RPS21P4-201ENST00000487122 248 ntBASIC3.58□□□□□ -1.84
FOXA3P55318 AC092666.1-203ENST00000495144 698 ntTSL 5 BASIC3.58□□□□□ -1.84
FOXA3P55318 AC010350.1-201ENST00000504908 231 ntBASIC3.58□□□□□ -1.84
FOXA3P55318 HMGB3P13-201ENST00000511263 607 ntBASIC3.58□□□□□ -1.84
FOXA3P55318 AC025766.1-201ENST00000514061 409 ntTSL 5 BASIC3.58□□□□□ -1.84
FOXA3P55318 MOCS2-208ENST00000527216 707 ntTSL 3 BASIC3.58□□□□□ -1.84
FOXA3P55318 AC100770.1-201ENST00000532310 322 ntBASIC3.58□□□□□ -1.84
FOXA3P55318 SDHAF2-208ENST00000543265 438 ntTSL 5 BASIC3.58□□□□□ -1.84
FOXA3P55318 AC087477.4-201ENST00000560586 542 ntTSL 4 BASIC3.58□□□□□ -1.84
FOXA3P55318 TVP23CP2-201ENST00000571473 623 ntBASIC3.58□□□□□ -1.84
FOXA3P55318 AL121834.1-201ENST00000572284 509 ntBASIC3.58□□□□□ -1.84
FOXA3P55318 ZNF227-204ENST00000586228 569 ntTSL 2 BASIC3.58□□□□□ -1.84
FOXA3P55318 AC067773.1-201ENST00000603284 1094 ntBASIC3.58□□□□□ -1.84
FOXA3P55318 AC015813.4-201ENST00000610469 179 ntBASIC3.58□□□□□ -1.84
FOXA3P55318 AC087633.2-201ENST00000618611 725 ntTSL 3 BASIC3.58□□□□□ -1.84
FOXA3P55318 AC090527.3-201ENST00000619041 548 ntBASIC3.58□□□□□ -1.84
FOXA3P55318 CCDC25-212ENST00000640944 261 ntTSL 5 BASIC3.58□□□□□ -1.84
FOXA3P55318 PRLR-203ENST00000348262 1339 ntTSL 1 (best) BASIC3.58□□□□□ -1.84
FOXA3P55318 BMPR1B-203ENST00000440890 5388 ntTSL 2 BASIC3.58□□□□□ -1.84
FOXA3P55318 EMSY-207ENST00000525919 4074 ntAPPRIS ALT1 TSL 1 (best) BASIC3.58□□□□□ -1.84
FOXA3P55318 IL13RA2-201ENST00000243213 1371 ntAPPRIS P1 TSL 1 (best) BASIC3.58□□□□□ -1.84
FOXA3P55318 BRCA2-201ENST00000380152 11986 ntAPPRIS P1 TSL 5 BASIC3.58□□□□□ -1.84
FOXA3P55318 ZNF679-202ENST00000421025 1567 ntAPPRIS P1 TSL 1 (best) BASIC3.58□□□□□ -1.84
FOXA3P55318 CASC19-281ENST00000642118 1554 ntBASIC3.58□□□□□ -1.84
FOXA3P55318 ABCA8-215ENST00000615593 3264 ntTSL 5 BASIC3.58□□□□□ -1.84
FOXA3P55318 STEAP2-203ENST00000394622 6612 ntAPPRIS P1 TSL 1 (best) BASIC3.58□□□□□ -1.84
FOXA3P55318 ZFHX4-207ENST00000521891 14019 ntAPPRIS P2 TSL 5 BASIC3.58□□□□□ -1.84
FOXA3P55318 AC024940.1-203ENST00000398963 4423 ntAPPRIS ALT2 TSL 5 BASIC3.58□□□□□ -1.84
FOXA3P55318 WDR63-201ENST00000294664 2995 ntAPPRIS P3 TSL 1 (best) BASIC3.57□□□□□ -1.84
FOXA3P55318 CFAP70-203ENST00000355577 3691 ntTSL 5 BASIC3.57□□□□□ -1.84
FOXA3P55318 CHL1-216ENST00000620033 7311 ntTSL 1 (best) BASIC3.57□□□□□ -1.84
FOXA3P55318 RIMS2-201ENST00000262231 3854 ntTSL 1 (best) BASIC3.57□□□□□ -1.84
FOXA3P55318 F2RL2-201ENST00000296641 3429 ntAPPRIS P1 TSL 1 (best) BASIC3.57□□□□□ -1.84
FOXA3P55318 CREM-201ENST00000337656 900 ntAPPRIS ALT1 TSL 5 BASIC3.57□□□□□ -1.84
FOXA3P55318 RNU6-984P-201ENST00000363236 109 ntBASIC3.57□□□□□ -1.84
FOXA3P55318 RN7SKP275-201ENST00000364626 301 ntBASIC3.57□□□□□ -1.84
FOXA3P55318 MNDA-201ENST00000368141 1752 ntAPPRIS P1 TSL 1 (best) BASIC3.57□□□□□ -1.84
FOXA3P55318 KLHL13-203ENST00000371878 3234 ntTSL 2 BASIC3.57□□□□□ -1.84
FOXA3P55318 PCDH11X-205ENST00000373094 9179 ntAPPRIS P4 TSL 1 (best) BASIC3.57□□□□□ -1.84
FOXA3P55318 SNORA70-201ENST00000384436 135 ntBASIC3.57□□□□□ -1.84
FOXA3P55318 TRGV10-201ENST00000390341 512 ntAPPRIS P1 BASIC3.57□□□□□ -1.84
FOXA3P55318 TRAV36DV7-201ENST00000390463 356 ntAPPRIS P1 BASIC3.57□□□□□ -1.84
FOXA3P55318 ARL4AP5-201ENST00000404372 599 ntBASIC3.57□□□□□ -1.84
FOXA3P55318 AL390774.1-201ENST00000411924 246 ntBASIC3.57□□□□□ -1.84
FOXA3P55318 AF015720.1-201ENST00000412240 349 ntTSL 3 BASIC3.57□□□□□ -1.84
FOXA3P55318 PMCHL2-201ENST00000415808 1841 ntTSL 1 (best) BASIC3.57□□□□□ -1.84
FOXA3P55318 AL133325.1-201ENST00000421090 382 ntBASIC3.57□□□□□ -1.84
FOXA3P55318 RPL7P57-201ENST00000423238 740 ntBASIC3.57□□□□□ -1.84
FOXA3P55318 AC115283.1-201ENST00000427353 400 ntBASIC3.57□□□□□ -1.84
FOXA3P55318 DYNLL1P7-201ENST00000429273 258 ntBASIC3.57□□□□□ -1.84
FOXA3P55318 FAM96AP1-201ENST00000430879 482 ntBASIC3.57□□□□□ -1.84
FOXA3P55318 CASP12-204ENST00000433738 709 ntTSL 1 (best) BASIC3.57□□□□□ -1.84
FOXA3P55318 CYCSP6-201ENST00000434498 302 ntBASIC3.57□□□□□ -1.84
FOXA3P55318 AC008269.1-201ENST00000438070 646 ntTSL 3 BASIC3.57□□□□□ -1.84
FOXA3P55318 AC069285.2-201ENST00000440210 275 ntBASIC3.57□□□□□ -1.84
FOXA3P55318 RPL36AP39-201ENST00000445859 318 ntBASIC3.57□□□□□ -1.84
FOXA3P55318 AC092590.1-201ENST00000471672 737 ntTSL 3 BASIC3.57□□□□□ -1.84
FOXA3P55318 CREM-230ENST00000474931 626 ntTSL 2 BASIC3.57□□□□□ -1.84
FOXA3P55318 SLC17A1-204ENST00000476801 1704 ntAPPRIS P1 TSL 2 BASIC3.57□□□□□ -1.84
FOXA3P55318 AC098859.2-201ENST00000506232 563 ntTSL 4 BASIC3.57□□□□□ -1.84
FOXA3P55318 ANAPC10-213ENST00000512680 505 ntTSL 3 BASIC3.57□□□□□ -1.84
FOXA3P55318 NDUFB4P12-201ENST00000513465 390 ntBASIC3.57□□□□□ -1.84
FOXA3P55318 MYLK-AS2-202ENST00000515464 754 ntTSL 2 BASIC3.57□□□□□ -1.84
FOXA3P55318 NECAB1-202ENST00000521366 2908 ntTSL 1 (best) BASIC3.57□□□□□ -1.84
FOXA3P55318 ASB8-215ENST00000540782 659 ntTSL 3 BASIC3.57□□□□□ -1.84
FOXA3P55318 POSTN-210ENST00000541481 3113 ntTSL 1 (best) BASIC3.57□□□□□ -1.84
FOXA3P55318 FKBP1BP1-201ENST00000553366 325 ntBASIC3.57□□□□□ -1.84
FOXA3P55318 HMGB3P26-201ENST00000560051 582 ntBASIC3.57□□□□□ -1.84
FOXA3P55318 AC015912.2-201ENST00000571053 181 ntBASIC3.57□□□□□ -1.84
FOXA3P55318 AC010547.6-201ENST00000571789 193 ntBASIC3.57□□□□□ -1.84
FOXA3P55318 AC090312.1-201ENST00000580637 348 ntBASIC3.57□□□□□ -1.84
FOXA3P55318 AC090125.1-201ENST00000581541 493 ntTSL 3 BASIC3.57□□□□□ -1.84
FOXA3P55318 AC131274.1-201ENST00000582507 254 ntTSL 3 BASIC3.57□□□□□ -1.84
FOXA3P55318 LRIT3-202ENST00000594814 3566 ntAPPRIS P1 TSL 5 BASIC3.57□□□□□ -1.84
FOXA3P55318 AC069307.1-201ENST00000602820 447 ntBASIC3.57□□□□□ -1.84
FOXA3P55318 AC005377.1-201ENST00000605126 456 ntBASIC3.57□□□□□ -1.84
FOXA3P55318 AC023509.5-201ENST00000617434 807 ntBASIC3.57□□□□□ -1.84
Retrieved 100 of 98,524 protein–RNA pairs in 102.1 ms