Protein–RNA interactions for Protein: P48061

CXCL12, Stromal cell-derived factor 1, humanhuman

Predictions only

Length 93 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CXCL12P48061 AC007557.4-201ENST00000421907 430 ntTSL 1 (best) BASIC4.84□□□□□ -1.63
CXCL12P48061 GAS5-208ENST00000425771 242 ntTSL 3 BASIC4.84□□□□□ -1.63
CXCL12P48061 AC000111.2-201ENST00000448200 210 ntBASIC4.84□□□□□ -1.63
CXCL12P48061 AL161912.1-201ENST00000448475 524 ntTSL 3 BASIC4.84□□□□□ -1.63
CXCL12P48061 AC017007.3-201ENST00000479865 435 ntBASIC4.84□□□□□ -1.63
CXCL12P48061 AC005412.2-201ENST00000492004 341 ntBASIC4.84□□□□□ -1.63
CXCL12P48061 AC025674.1-201ENST00000507074 324 ntBASIC4.84□□□□□ -1.63
CXCL12P48061 AC139722.1-201ENST00000512502 782 ntTSL 3 BASIC4.84□□□□□ -1.63
CXCL12P48061 RNU1-6P-201ENST00000516290 144 ntBASIC4.84□□□□□ -1.63
CXCL12P48061 AC022784.4-201ENST00000518589 422 ntTSL 1 (best) BASIC4.84□□□□□ -1.63
CXCL12P48061 HMGB1P23-201ENST00000518743 568 ntBASIC4.84□□□□□ -1.63
CXCL12P48061 NSMCE2-206ENST00000519010 848 ntTSL 2 BASIC4.84□□□□□ -1.63
CXCL12P48061 LINC02402-201ENST00000550337 1212 ntTSL 1 (best) BASIC4.84□□□□□ -1.63
CXCL12P48061 AC084824.1-201ENST00000550917 1005 ntBASIC4.84□□□□□ -1.63
CXCL12P48061 AC009803.1-202ENST00000551940 544 ntTSL 4 BASIC4.84□□□□□ -1.63
CXCL12P48061 AL049839.1-201ENST00000556151 657 ntBASIC4.84□□□□□ -1.63
CXCL12P48061 AC009117.3-202ENST00000563825 557 ntTSL 4 BASIC4.84□□□□□ -1.63
CXCL12P48061 RN7SL802P-201ENST00000577858 299 ntBASIC4.84□□□□□ -1.63
CXCL12P48061 LINC01676-204ENST00000595309 871 ntTSL 5 BASIC4.84□□□□□ -1.63
CXCL12P48061 AC100847.1-201ENST00000611316 481 ntBASIC4.84□□□□□ -1.63
CXCL12P48061 AC092683.1-209ENST00000612970 1105 ntTSL 5 BASIC4.84□□□□□ -1.63
CXCL12P48061 AC108359.1-201ENST00000616451 1211 ntBASIC4.84□□□□□ -1.63
CXCL12P48061 MIR6133-201ENST00000617057 108 ntBASIC4.84□□□□□ -1.63
CXCL12P48061 YWHAEP7-201ENST00000617508 639 ntTSL 3 BASIC4.84□□□□□ -1.63
CXCL12P48061 AL121890.3-201ENST00000618494 516 ntBASIC4.84□□□□□ -1.63
CXCL12P48061 LINC00850-201ENST00000629221 685 ntTSL 1 (best) BASIC4.84□□□□□ -1.63
CXCL12P48061 PCAT19-201ENST00000588495 3472 ntTSL 1 (best) BASIC4.84□□□□□ -1.63
CXCL12P48061 AL121839.2-201ENST00000565058 6943 ntBASIC4.84□□□□□ -1.63
CXCL12P48061 STAG2-205ENST00000371160 6045 ntAPPRIS P3 TSL 1 (best) BASIC4.84□□□□□ -1.64
CXCL12P48061 DYNC1I2-225ENST00000508530 2494 ntAPPRIS ALT1 TSL 1 (best) BASIC4.84□□□□□ -1.64
CXCL12P48061 MYB-226ENST00000528774 2277 ntAPPRIS ALT1 TSL 1 (best) BASIC4.84□□□□□ -1.64
CXCL12P48061 GAS2L3-203ENST00000539410 2229 ntAPPRIS P1 TSL 2 BASIC4.84□□□□□ -1.64
CXCL12P48061 ZNF678-201ENST00000343776 8556 ntAPPRIS P1 TSL 1 (best) BASIC4.84□□□□□ -1.64
CXCL12P48061 STAU2-210ENST00000521210 1950 ntTSL 2 BASIC4.84□□□□□ -1.64
CXCL12P48061 TOX3-202ENST00000407228 3124 ntAPPRIS ALT2 TSL 2 BASIC4.83□□□□□ -1.64
CXCL12P48061 AL442639.1-201ENST00000625030 1899 ntBASIC4.83□□□□□ -1.64
CXCL12P48061 TRPC4-203ENST00000358477 2955 ntTSL 1 (best) BASIC4.83□□□□□ -1.64
CXCL12P48061 AL022311.1-201ENST00000623726 19416 ntBASIC4.83□□□□□ -1.64
CXCL12P48061 NSD1-204ENST00000439151 12892 ntAPPRIS P1 TSL 1 (best) BASIC4.83□□□□□ -1.64
CXCL12P48061 AP000756.2-201ENST00000624168 2567 ntBASIC4.83□□□□□ -1.64
CXCL12P48061 MBNL1-203ENST00000324196 5225 ntTSL 5 BASIC4.83□□□□□ -1.64
CXCL12P48061 AP004243.1-201ENST00000529108 1433 ntAPPRIS P1 TSL 5 BASIC4.83□□□□□ -1.64
CXCL12P48061 PTPRB-202ENST00000334414 12316 ntAPPRIS P4 TSL 1 (best) BASIC4.83□□□□□ -1.64
CXCL12P48061 AL359313.1-201ENST00000447311 2293 ntTSL 2 BASIC4.83□□□□□ -1.64
CXCL12P48061 UQCRC2P1-201ENST00000417777 1332 ntBASIC4.83□□□□□ -1.64
CXCL12P48061 LINC01690-201ENST00000424837 576 ntTSL 2 BASIC4.83□□□□□ -1.64
CXCL12P48061 RPL34P27-201ENST00000428810 349 ntBASIC4.83□□□□□ -1.64
CXCL12P48061 RPS27AP12-201ENST00000429552 465 ntBASIC4.83□□□□□ -1.64
CXCL12P48061 ARHGAP26-IT1-201ENST00000433186 388 ntTSL 3 BASIC4.83□□□□□ -1.64
CXCL12P48061 POU6F2-AS1-201ENST00000433519 381 ntTSL 3 BASIC4.83□□□□□ -1.64
CXCL12P48061 AC138761.5-201ENST00000433967 325 ntBASIC4.83□□□□□ -1.64
CXCL12P48061 LINC01754-201ENST00000437920 750 ntTSL 3 BASIC4.83□□□□□ -1.64
CXCL12P48061 AC122718.1-201ENST00000439448 744 ntBASIC4.83□□□□□ -1.64
CXCL12P48061 LINC01704-202ENST00000442358 649 ntTSL 3 BASIC4.83□□□□□ -1.64
CXCL12P48061 AL691482.1-201ENST00000453255 87 ntBASIC4.83□□□□□ -1.64
CXCL12P48061 AL590652.1-201ENST00000453790 850 ntTSL 3 BASIC4.83□□□□□ -1.64
CXCL12P48061 FAM133DP-201ENST00000464802 691 ntBASIC4.83□□□□□ -1.64
CXCL12P48061 OSGEPL1-AS1-203ENST00000523895 567 ntTSL 4 BASIC4.83□□□□□ -1.64
CXCL12P48061 AL110505.1-201ENST00000557062 522 ntTSL 3 BASIC4.83□□□□□ -1.64
CXCL12P48061 RN7SL652P-201ENST00000577769 300 ntBASIC4.83□□□□□ -1.64
CXCL12P48061 AP001357.1-201ENST00000586304 1053 ntBASIC4.83□□□□□ -1.64
CXCL12P48061 AC023043.4-201ENST00000612081 449 ntBASIC4.83□□□□□ -1.64
CXCL12P48061 AC004232.3-201ENST00000622977 525 ntBASIC4.83□□□□□ -1.64
CXCL12P48061 DDX20-202ENST00000475700 4332 ntTSL 2 BASIC4.83□□□□□ -1.64
CXCL12P48061 ZNF418-205ENST00000595830 3543 ntAPPRIS P3 TSL 1 (best) BASIC4.83□□□□□ -1.64
CXCL12P48061 PHC3-214ENST00000494943 5030 ntTSL 1 (best) BASIC4.83□□□□□ -1.64
CXCL12P48061 MLIP-213ENST00000514921 5743 ntAPPRIS ALT2 TSL 1 (best) BASIC4.83□□□□□ -1.64
CXCL12P48061 ANK3-201ENST00000280772 16874 ntAPPRIS P3 TSL 1 (best) BASIC4.83□□□□□ -1.64
CXCL12P48061 CDC42BPA-204ENST00000366767 9320 ntTSL 1 (best) BASIC4.83□□□□□ -1.64
CXCL12P48061 AL132656.2-201ENST00000482985 1837 ntTSL 5 BASIC4.83□□□□□ -1.64
CXCL12P48061 AC008758.3-201ENST00000507003 1829 ntBASIC4.83□□□□□ -1.64
CXCL12P48061 ASB14-201ENST00000389601 3175 ntAPPRIS ALT2 TSL 5 BASIC4.83□□□□□ -1.64
CXCL12P48061 PSMA4-201ENST00000044462 4411 ntAPPRIS P1 TSL 1 (best) BASIC4.83□□□□□ -1.64
CXCL12P48061 IFIT2-203ENST00000638108 3703 ntAPPRIS P2 TSL 5 BASIC4.83□□□□□ -1.64
CXCL12P48061 AC012078.1-201ENST00000405035 1646 ntBASIC4.83□□□□□ -1.64
CXCL12P48061 MUC12-206ENST00000536621 16321 ntAPPRIS P2 TSL 5 BASIC4.83□□□□□ -1.64
CXCL12P48061 GABRA2-205ENST00000507069 1562 ntTSL 3 BASIC4.82□□□□□ -1.64
CXCL12P48061 FUT9-201ENST00000302103 12783 ntAPPRIS P1 TSL 1 (best) BASIC4.82□□□□□ -1.64
CXCL12P48061 AL022322.2-201ENST00000624072 20397 ntBASIC4.82□□□□□ -1.64
CXCL12P48061 ZNF559-201ENST00000317221 2732 ntTSL 2 BASIC4.82□□□□□ -1.64
CXCL12P48061 MCMDC2-204ENST00000422365 5096 ntAPPRIS P1 TSL 2 BASIC4.82□□□□□ -1.64
CXCL12P48061 TET2-202ENST00000305737 9233 ntTSL 1 (best) BASIC4.82□□□□□ -1.64
CXCL12P48061 GDNF-AS1-202ENST00000510986 1941 ntTSL 1 (best) BASIC4.82□□□□□ -1.64
CXCL12P48061 HSD17B11-201ENST00000358290 1885 ntAPPRIS P1 TSL 1 (best) BASIC4.82□□□□□ -1.64
CXCL12P48061 SNORA73.1-201ENST00000363107 205 ntBASIC4.82□□□□□ -1.64
CXCL12P48061 RNU1-85P-201ENST00000364127 164 ntBASIC4.82□□□□□ -1.64
CXCL12P48061 AC007618.1-201ENST00000366455 732 ntBASIC4.82□□□□□ -1.64
CXCL12P48061 DNASE2B-202ENST00000370665 1269 ntAPPRIS P1 TSL 1 (best) BASIC4.82□□□□□ -1.64
CXCL12P48061 OR5L2-201ENST00000378397 936 ntAPPRIS P1 BASIC4.82□□□□□ -1.64
CXCL12P48061 IGLV5-48-201ENST00000390293 369 ntAPPRIS P1 BASIC4.82□□□□□ -1.64
CXCL12P48061 OR6C69P-201ENST00000394268 893 ntBASIC4.82□□□□□ -1.64
CXCL12P48061 KLRC3-202ENST00000396439 1028 ntAPPRIS ALT2 TSL 5 BASIC4.82□□□□□ -1.64
CXCL12P48061 RN7SKP267-201ENST00000410381 285 ntBASIC4.82□□□□□ -1.64
CXCL12P48061 DAB1-AS1-201ENST00000416598 1262 ntTSL 1 (best) BASIC4.82□□□□□ -1.64
CXCL12P48061 KCNMA1-AS3-201ENST00000418515 701 ntTSL 3 BASIC4.82□□□□□ -1.64
CXCL12P48061 LINC01850-201ENST00000429916 357 ntTSL 3 BASIC4.82□□□□□ -1.64
CXCL12P48061 RBBP6-204ENST00000452655 854 ntTSL 1 (best) BASIC4.82□□□□□ -1.64
CXCL12P48061 snoU13.29-201ENST00000459370 104 ntBASIC4.82□□□□□ -1.64
CXCL12P48061 OR2A3P-201ENST00000493774 953 ntBASIC4.82□□□□□ -1.64
CXCL12P48061 LINC02236-201ENST00000508881 552 ntTSL 4 BASIC4.82□□□□□ -1.64
Retrieved 100 of 98,524 protein–RNA pairs in 111.5 ms