Protein–RNA interactions for Protein: P35548

MSX2, Homeobox protein MSX-2, humanhuman

Predicted RBP Predictions only

Length 267 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX2P35548 AC069234.5-201ENST00000611056 416 ntBASIC5.67□□□□□ -1.5
MSX2P35548 RAB30-216ENST00000612684 9783 ntAPPRIS P1 TSL 3 BASIC5.67□□□□□ -1.5
MSX2P35548 AL139418.1-201ENST00000613613 177 ntBASIC5.67□□□□□ -1.5
MSX2P35548 DARS-AS1-225ENST00000615163 824 ntTSL 5 BASIC5.67□□□□□ -1.5
MSX2P35548 CCL4-202ENST00000615863 904 ntAPPRIS P1 TSL 1 (best) BASIC5.67□□□□□ -1.5
MSX2P35548 U6atac.1-201ENST00000616025 117 ntBASIC5.67□□□□□ -1.5
MSX2P35548 MALAT1-209ENST00000616691 587 ntTSL 2 BASIC5.67□□□□□ -1.5
MSX2P35548 CT45A10-202ENST00000617981 578 ntAPPRIS P1 TSL 1 (best) BASIC5.67□□□□□ -1.5
MSX2P35548 MIR6849-201ENST00000618543 69 ntBASIC5.67□□□□□ -1.5
MSX2P35548 AC022400.9-201ENST00000623633 273 ntBASIC5.67□□□□□ -1.5
MSX2P35548 BANCR-201ENST00000624238 473 ntTSL 2 BASIC5.67□□□□□ -1.5
MSX2P35548 MBD5-221ENST00000637159 902 ntTSL 5 BASIC5.67□□□□□ -1.5
MSX2P35548 AL357060.1-201ENST00000638039 977 ntTSL 5 BASIC5.67□□□□□ -1.5
MSX2P35548 THAP6-202ENST00000380837 3423 ntAPPRIS ALT2 TSL 1 (best) BASIC5.67□□□□□ -1.5
MSX2P35548 ZNF788-203ENST00000430298 3941 ntTSL 2 BASIC5.67□□□□□ -1.5
MSX2P35548 ORC4-215ENST00000536575 6328 ntTSL 2 BASIC5.67□□□□□ -1.5
MSX2P35548 KSR2-202ENST00000425217 17008 ntTSL 5 BASIC5.67□□□□□ -1.5
MSX2P35548 PROS2P-201ENST00000474651 1951 ntBASIC5.67□□□□□ -1.5
MSX2P35548 CCDC62-205ENST00000537566 3537 ntAPPRIS ALT2 TSL 2 BASIC5.67□□□□□ -1.5
MSX2P35548 IL1RAP-205ENST00000412504 4875 ntAPPRIS P1 TSL 1 (best) BASIC5.67□□□□□ -1.5
MSX2P35548 LMO3-201ENST00000261169 3810 ntTSL 1 (best) BASIC5.67□□□□□ -1.5
MSX2P35548 EMCN-202ENST00000305864 1575 ntTSL 1 (best) BASIC5.67□□□□□ -1.5
MSX2P35548 AC107021.2-201ENST00000567714 2095 ntBASIC5.67□□□□□ -1.5
MSX2P35548 GART-205ENST00000381839 3469 ntAPPRIS P1 TSL 1 (best) BASIC5.67□□□□□ -1.5
MSX2P35548 PREPL-216ENST00000541738 6049 ntTSL 2 BASIC5.67□□□□□ -1.5
MSX2P35548 CCDC54-201ENST00000261058 1444 ntAPPRIS P1 BASIC5.66□□□□□ -1.5
MSX2P35548 CFAP70-202ENST00000340329 1403 ntTSL 5 BASIC5.66□□□□□ -1.5
MSX2P35548 AL158152.1-201ENST00000602652 1435 ntBASIC5.66□□□□□ -1.5
MSX2P35548 AC004023.1-201ENST00000561473 1744 ntBASIC5.66□□□□□ -1.5
MSX2P35548 CYP2C8-210ENST00000535898 1799 ntTSL 2 BASIC5.66□□□□□ -1.5
MSX2P35548 AC110079.2-201ENST00000629462 1512 ntTSL 1 (best) BASIC5.66□□□□□ -1.5
MSX2P35548 SPATA9-201ENST00000274432 1100 ntAPPRIS P1 TSL 1 (best) BASIC5.66□□□□□ -1.5
MSX2P35548 CD84-201ENST00000311224 1116 ntAPPRIS ALT2 TSL 1 (best) BASIC5.66□□□□□ -1.5
MSX2P35548 OR10AG1-201ENST00000312345 1016 ntAPPRIS P1 BASIC5.66□□□□□ -1.5
MSX2P35548 OR52H1-201ENST00000322653 1057 ntAPPRIS P1 BASIC5.66□□□□□ -1.5
MSX2P35548 RN7SKP184-201ENST00000362348 333 ntBASIC5.66□□□□□ -1.5
MSX2P35548 Y_RNA.6-201ENST00000362350 114 ntBASIC5.66□□□□□ -1.5
MSX2P35548 RNU1-5P-201ENST00000362684 144 ntBASIC5.66□□□□□ -1.5
MSX2P35548 Y_RNA.192-201ENST00000363977 102 ntBASIC5.66□□□□□ -1.5
MSX2P35548 C1orf194-203ENST00000369948 663 ntAPPRIS P1 TSL 2 BASIC5.66□□□□□ -1.5
MSX2P35548 PPCS-201ENST00000372556 984 ntTSL 2 BASIC5.66□□□□□ -1.5
MSX2P35548 SAR1A-201ENST00000373236 437 ntTSL 1 (best) BASIC5.66□□□□□ -1.5
MSX2P35548 PLIN2-203ENST00000380465 631 ntTSL 2 BASIC5.66□□□□□ -1.5
MSX2P35548 Y_RNA.516-201ENST00000384541 124 ntBASIC5.66□□□□□ -1.5
MSX2P35548 Y_RNA.560-201ENST00000384689 102 ntBASIC5.66□□□□□ -1.5
MSX2P35548 AL663109.1-201ENST00000411498 844 ntBASIC5.66□□□□□ -1.5
MSX2P35548 AC002511.2-201ENST00000413796 450 ntTSL 2 BASIC5.66□□□□□ -1.5
MSX2P35548 P2RY10P2-201ENST00000416730 913 ntBASIC5.66□□□□□ -1.5
MSX2P35548 AC097717.1-228ENST00000417006 754 ntTSL 3 BASIC5.66□□□□□ -1.5
MSX2P35548 NENFP1-201ENST00000419476 466 ntBASIC5.66□□□□□ -1.5
MSX2P35548 AL672212.1-201ENST00000422246 400 ntBASIC5.66□□□□□ -1.5
MSX2P35548 REREP1Y-201ENST00000422655 198 ntBASIC5.66□□□□□ -1.5
MSX2P35548 AL162414.1-201ENST00000426204 744 ntTSL 3 BASIC5.66□□□□□ -1.5
MSX2P35548 AL158212.1-201ENST00000428766 315 ntTSL 5 BASIC5.66□□□□□ -1.5
MSX2P35548 REREP2Y-201ENST00000439103 200 ntBASIC5.66□□□□□ -1.5
MSX2P35548 MTCYBP34-201ENST00000439552 670 ntBASIC5.66□□□□□ -1.5
MSX2P35548 ARAFP2-201ENST00000440565 559 ntBASIC5.66□□□□□ -1.5
MSX2P35548 UBQLN1P1-207ENST00000441056 1169 ntBASIC5.66□□□□□ -1.5
MSX2P35548 AL357520.1-201ENST00000441557 453 ntBASIC5.66□□□□□ -1.5
MSX2P35548 AL592437.1-201ENST00000443781 492 ntBASIC5.66□□□□□ -1.5
MSX2P35548 OSBPL10-AS1-205ENST00000444503 526 ntTSL 4 BASIC5.66□□□□□ -1.5
MSX2P35548 AC026320.1-202ENST00000444729 672 ntTSL 3 BASIC5.66□□□□□ -1.5
MSX2P35548 HMGB1P48-201ENST00000446155 598 ntBASIC5.66□□□□□ -1.5
MSX2P35548 AC009244.1-201ENST00000450566 258 ntBASIC5.66□□□□□ -1.5
MSX2P35548 ATP5A1P7-201ENST00000453978 1279 ntBASIC5.66□□□□□ -1.5
MSX2P35548 AC055758.1-201ENST00000494509 569 ntTSL 3 BASIC5.66□□□□□ -1.5
MSX2P35548 LTV1P1-201ENST00000510683 1237 ntBASIC5.66□□□□□ -1.5
MSX2P35548 LINC02485-202ENST00000511899 770 ntTSL 3 BASIC5.66□□□□□ -1.5
MSX2P35548 MTRNR2L5-201ENST00000512524 739 ntAPPRIS P1 BASIC5.66□□□□□ -1.5
MSX2P35548 AC040970.1-202ENST00000517908 505 ntTSL 3 BASIC5.66□□□□□ -1.5
MSX2P35548 AC022915.3-201ENST00000518620 594 ntTSL 4 BASIC5.66□□□□□ -1.5
MSX2P35548 AC015468.2-201ENST00000519605 550 ntTSL 3 BASIC5.66□□□□□ -1.5
MSX2P35548 IGKV1OR22-1-201ENST00000521497 360 ntBASIC5.66□□□□□ -1.5
MSX2P35548 AF117829.1-208ENST00000521996 915 ntTSL 3 BASIC5.66□□□□□ -1.5
MSX2P35548 AC013701.1-201ENST00000522657 465 ntBASIC5.66□□□□□ -1.5
MSX2P35548 VNN2-207ENST00000525289 900 ntTSL 1 (best) BASIC5.66□□□□□ -1.5
MSX2P35548 AC022874.1-201ENST00000526382 550 ntTSL 3 BASIC5.66□□□□□ -1.5
MSX2P35548 OR8Q1P-201ENST00000526467 655 ntBASIC5.66□□□□□ -1.5
MSX2P35548 PLCZ1-203ENST00000534932 525 ntTSL 4 BASIC5.66□□□□□ -1.5
MSX2P35548 AC090424.1-201ENST00000535243 736 ntBASIC5.66□□□□□ -1.5
MSX2P35548 AC079866.2-201ENST00000541870 515 ntTSL 3 BASIC5.66□□□□□ -1.5
MSX2P35548 AC034102.2-201ENST00000548861 489 ntAPPRIS P1 TSL 5 BASIC5.66□□□□□ -1.5
MSX2P35548 AL161757.5-202ENST00000556696 570 ntTSL 3 BASIC5.66□□□□□ -1.5
MSX2P35548 AL133241.1-201ENST00000556832 487 ntBASIC5.66□□□□□ -1.5
MSX2P35548 AC040918.1-201ENST00000560056 632 ntTSL 2 BASIC5.66□□□□□ -1.5
MSX2P35548 NR2F2-AS1-211ENST00000561402 589 ntTSL 3 BASIC5.66□□□□□ -1.5
MSX2P35548 AC234778.2-201ENST00000566241 354 ntBASIC5.66□□□□□ -1.5
MSX2P35548 LCMT1-AS1-204ENST00000569920 474 ntTSL 2 BASIC5.66□□□□□ -1.5
MSX2P35548 AC074051.3-201ENST00000570238 358 ntBASIC5.66□□□□□ -1.5
MSX2P35548 AC100844.1-201ENST00000580622 440 ntTSL 5 BASIC5.66□□□□□ -1.5
MSX2P35548 AL136084.2-213ENST00000585704 690 ntTSL 5 BASIC5.66□□□□□ -1.5
MSX2P35548 ZNF66-203ENST00000594534 757 ntTSL 5 BASIC5.66□□□□□ -1.5
MSX2P35548 AC125494.3-201ENST00000602759 455 ntBASIC5.66□□□□□ -1.5
MSX2P35548 AC247036.1-201ENST00000605005 389 ntTSL 2 BASIC5.66□□□□□ -1.5
MSX2P35548 CLK4-214ENST00000611575 1206 ntTSL 1 (best) BASIC5.66□□□□□ -1.5
MSX2P35548 AL355974.3-201ENST00000617383 467 ntBASIC5.66□□□□□ -1.5
MSX2P35548 CT45A6-202ENST00000620654 878 ntAPPRIS P1 TSL 1 (best) BASIC5.66□□□□□ -1.5
MSX2P35548 AC006453.3-201ENST00000635891 377 ntBASIC5.66□□□□□ -1.5
MSX2P35548 AC002384.2-201ENST00000636036 790 ntTSL 3 BASIC5.66□□□□□ -1.5
MSX2P35548 AC068137.3-201ENST00000639191 341 ntBASIC5.66□□□□□ -1.5
Retrieved 100 of 98,524 protein–RNA pairs in 98.4 ms