Protein–RNA interactions for Protein: P35499

SCN4A, Sodium channel protein type 4 subunit alpha, humanhuman

Predictions only

Length 1,836 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCN4AP35499 AC011287.1-206ENST00000638774 2642 ntTSL 5 BASIC5.71□□□□□ -1.49
SCN4AP35499 AHNAK2-201ENST00000333244 18254 ntAPPRIS P1 TSL 5 BASIC5.71□□□□□ -1.49
SCN4AP35499 AC089984.1-201ENST00000552780 1431 ntTSL 3 BASIC5.71□□□□□ -1.49
SCN4AP35499 HHLA1-201ENST00000414222 4105 ntAPPRIS ALT2 TSL 5 BASIC5.71□□□□□ -1.5
SCN4AP35499 ITGAV-204ENST00000433736 3288 ntAPPRIS ALT2 TSL 2 BASIC5.71□□□□□ -1.5
SCN4AP35499 SYNJ2BP-201ENST00000256366 7015 ntAPPRIS P1 TSL 1 (best) BASIC5.71□□□□□ -1.5
SCN4AP35499 DTNA-229ENST00000598142 2509 ntTSL 1 (best) BASIC5.71□□□□□ -1.5
SCN4AP35499 SNORD46.1-201ENST00000364139 104 ntBASIC5.71□□□□□ -1.5
SCN4AP35499 GTSF1L-202ENST00000373005 459 ntAPPRIS ALT2 TSL 3 BASIC5.71□□□□□ -1.5
SCN4AP35499 LRRC37BP1-201ENST00000398851 714 ntBASIC5.71□□□□□ -1.5
SCN4AP35499 RPS29P17-201ENST00000430795 166 ntBASIC5.71□□□□□ -1.5
SCN4AP35499 RPL23AP83-201ENST00000434984 473 ntBASIC5.71□□□□□ -1.5
SCN4AP35499 VN1R34P-201ENST00000447387 883 ntBASIC5.71□□□□□ -1.5
SCN4AP35499 NUTF2P3-201ENST00000448540 384 ntBASIC5.71□□□□□ -1.5
SCN4AP35499 PCBP1-AS1-237ENST00000452431 1194 ntTSL 4 BASIC5.71□□□□□ -1.5
SCN4AP35499 RNU1-45P-201ENST00000517191 141 ntBASIC5.71□□□□□ -1.5
SCN4AP35499 AC090692.1-202ENST00000525363 607 ntTSL 4 BASIC5.71□□□□□ -1.5
SCN4AP35499 AC079064.1-201ENST00000528365 362 ntBASIC5.71□□□□□ -1.5
SCN4AP35499 AC011477.5-201ENST00000586571 259 ntBASIC5.71□□□□□ -1.5
SCN4AP35499 AC112200.1-201ENST00000625015 234 ntBASIC5.71□□□□□ -1.5
SCN4AP35499 U3.53-201ENST00000628922 216 ntBASIC5.71□□□□□ -1.5
SCN4AP35499 MYBPC1-202ENST00000361685 3871 ntAPPRIS ALT2 TSL 1 (best) BASIC5.71□□□□□ -1.5
SCN4AP35499 UNC79-203ENST00000553484 9100 ntTSL 5 BASIC5.71□□□□□ -1.5
SCN4AP35499 CYP1D1P-201ENST00000416662 1433 ntBASIC5.71□□□□□ -1.5
SCN4AP35499 SLC1A2-203ENST00000395753 11689 ntAPPRIS ALT1 TSL 2 BASIC5.71□□□□□ -1.5
SCN4AP35499 ZNF85-201ENST00000300540 1531 ntTSL 1 (best) BASIC5.71□□□□□ -1.5
SCN4AP35499 RPL7-204ENST00000396467 1526 ntTSL 3 BASIC5.71□□□□□ -1.5
SCN4AP35499 CCT6B-203ENST00000436961 1639 ntTSL 2 BASIC5.71□□□□□ -1.5
SCN4AP35499 PSMA8-205ENST00000612461 1619 ntTSL 5 BASIC5.71□□□□□ -1.5
SCN4AP35499 LINC01676-202ENST00000435253 1849 ntTSL 1 (best) BASIC5.71□□□□□ -1.5
SCN4AP35499 CNTN1-208ENST00000551295 5557 ntAPPRIS P1 TSL 1 (best) BASIC5.7□□□□□ -1.5
SCN4AP35499 FHL1-218ENST00000543669 2878 ntTSL 1 (best) BASIC5.7□□□□□ -1.5
SCN4AP35499 DENND4A-201ENST00000431932 5875 ntAPPRIS P1 TSL 1 (best) BASIC5.7□□□□□ -1.5
SCN4AP35499 R3HCC1L-202ENST00000314594 3198 ntAPPRIS P1 TSL 5 BASIC5.7□□□□□ -1.5
SCN4AP35499 NRIP1-201ENST00000318948 7556 ntAPPRIS P1 TSL 2 BASIC5.7□□□□□ -1.5
SCN4AP35499 C2CD6-202ENST00000439140 5512 ntAPPRIS ALT2 TSL 1 (best) BASIC5.7□□□□□ -1.5
SCN4AP35499 R3HCC1L-201ENST00000298999 3379 ntAPPRIS P1 TSL 5 BASIC5.7□□□□□ -1.5
SCN4AP35499 IQGAP2-203ENST00000396234 3376 ntTSL 1 (best) BASIC5.7□□□□□ -1.5
SCN4AP35499 AL357515.1-201ENST00000402967 542 ntBASIC5.7□□□□□ -1.5
SCN4AP35499 SNORA11C-201ENST00000408532 129 ntBASIC5.7□□□□□ -1.5
SCN4AP35499 DYDC1-203ENST00000421924 708 ntAPPRIS P1 TSL 1 (best) BASIC5.7□□□□□ -1.5
SCN4AP35499 ATF2-212ENST00000426833 4132 ntAPPRIS P1 TSL 1 (best) BASIC5.7□□□□□ -1.5
SCN4AP35499 TEX41-206ENST00000432608 661 ntTSL 3 BASIC5.7□□□□□ -1.5
SCN4AP35499 AL132765.1-201ENST00000434165 553 ntBASIC5.7□□□□□ -1.5
SCN4AP35499 AC098820.1-201ENST00000453157 512 ntTSL 2 BASIC5.7□□□□□ -1.5
SCN4AP35499 CLEC2A-202ENST00000455827 916 ntAPPRIS P1 TSL 1 (best) BASIC5.7□□□□□ -1.5
SCN4AP35499 RN7SL542P-201ENST00000467147 294 ntBASIC5.7□□□□□ -1.5
SCN4AP35499 SLIT2-IT1-201ENST00000515882 601 ntTSL 1 (best) BASIC5.7□□□□□ -1.5
SCN4AP35499 SCGB2A2-202ENST00000525380 1305 ntTSL 2 BASIC5.7□□□□□ -1.5
SCN4AP35499 NDUFB4P11-201ENST00000560510 395 ntBASIC5.7□□□□□ -1.5
SCN4AP35499 RORB-201ENST00000376896 9551 ntAPPRIS P1 TSL 1 (best) BASIC5.7□□□□□ -1.5
SCN4AP35499 RGS5-212ENST00000618415 5812 ntTSL 4 BASIC5.7□□□□□ -1.5
SCN4AP35499 PEX26-201ENST00000329627 18445 ntAPPRIS P1 TSL 1 (best) BASIC5.7□□□□□ -1.5
SCN4AP35499 AC010266.2-201ENST00000564741 3255 ntBASIC5.7□□□□□ -1.5
SCN4AP35499 ANK2-226ENST00000612754 6134 ntTSL 5 BASIC5.7□□□□□ -1.5
SCN4AP35499 OR14L1P-202ENST00000641545 3009 ntBASIC5.7□□□□□ -1.5
SCN4AP35499 NDRG3-202ENST00000359675 2917 ntAPPRIS ALT1 TSL 1 (best) BASIC5.69□□□□□ -1.5
SCN4AP35499 BDNF-210ENST00000438929 4059 ntTSL 1 (best) BASIC5.69□□□□□ -1.5
SCN4AP35499 AL031428.1-201ENST00000427154 666 ntTSL 2 BASIC5.69□□□□□ -1.5
SCN4AP35499 RPL7AP49-201ENST00000429522 581 ntBASIC5.69□□□□□ -1.5
SCN4AP35499 AL591438.1-201ENST00000433508 581 ntBASIC5.69□□□□□ -1.5
SCN4AP35499 LINC01704-202ENST00000442358 649 ntTSL 3 BASIC5.69□□□□□ -1.5
SCN4AP35499 RPL21P126-201ENST00000470049 478 ntBASIC5.69□□□□□ -1.5
SCN4AP35499 AC104763.1-201ENST00000475274 360 ntBASIC5.69□□□□□ -1.5
SCN4AP35499 AC010255.3-204ENST00000514637 454 ntTSL 2 BASIC5.69□□□□□ -1.5
SCN4AP35499 NRG3-205ENST00000537893 1174 ntTSL 1 (best) BASIC5.69□□□□□ -1.5
SCN4AP35499 AC125603.1-201ENST00000552718 366 ntTSL 3 BASIC5.69□□□□□ -1.5
SCN4AP35499 AC090518.1-202ENST00000568246 578 ntTSL 4 BASIC5.69□□□□□ -1.5
SCN4AP35499 LINC02186-201ENST00000575767 885 ntTSL 1 (best) BASIC5.69□□□□□ -1.5
SCN4AP35499 RN7SL176P-201ENST00000580352 264 ntBASIC5.69□□□□□ -1.5
SCN4AP35499 AC022916.3-201ENST00000592961 742 ntBASIC5.69□□□□□ -1.5
SCN4AP35499 LINC01905-206ENST00000593180 524 ntTSL 2 BASIC5.69□□□□□ -1.5
SCN4AP35499 DTNA-207ENST00000444659 6343 ntAPPRIS ALT2 TSL 5 BASIC5.69□□□□□ -1.5
SCN4AP35499 GRIK2-203ENST00000369134 4185 ntTSL 5 BASIC5.69□□□□□ -1.5
SCN4AP35499 CCDC186-203ENST00000369287 7245 ntAPPRIS P1 TSL 1 (best) BASIC5.69□□□□□ -1.5
SCN4AP35499 STAU2-210ENST00000521210 1950 ntTSL 2 BASIC5.69□□□□□ -1.5
SCN4AP35499 SASS6-201ENST00000287482 3880 ntAPPRIS P1 TSL 1 (best) BASIC5.69□□□□□ -1.5
SCN4AP35499 GTDC1-204ENST00000392869 10514 ntAPPRIS P1 TSL 5 BASIC5.69□□□□□ -1.5
SCN4AP35499 ZNF585B-205ENST00000532828 6210 ntAPPRIS P1 TSL 1 (best) BASIC5.69□□□□□ -1.5
SCN4AP35499 ZNF418-205ENST00000595830 3543 ntAPPRIS P3 TSL 1 (best) BASIC5.69□□□□□ -1.5
SCN4AP35499 AC010531.4-202ENST00000569872 1718 ntTSL 2 BASIC5.69□□□□□ -1.5
SCN4AP35499 RGSL1-201ENST00000294854 3696 ntAPPRIS P1 TSL 1 (best) BASIC5.69□□□□□ -1.5
SCN4AP35499 TMEM200A-202ENST00000392429 5017 ntAPPRIS P1 TSL 1 (best) BASIC5.69□□□□□ -1.5
SCN4AP35499 SNORA70.6-201ENST00000383934 134 ntBASIC5.69□□□□□ -1.5
SCN4AP35499 U3.23-201ENST00000391132 200 ntBASIC5.69□□□□□ -1.5
SCN4AP35499 PPIAP31-201ENST00000405422 495 ntBASIC5.69□□□□□ -1.5
SCN4AP35499 CYCSP19-201ENST00000411715 316 ntBASIC5.69□□□□□ -1.5
SCN4AP35499 AC064875.1-202ENST00000421112 561 ntTSL 4 BASIC5.69□□□□□ -1.5
SCN4AP35499 AC062021.1-201ENST00000429008 557 ntTSL 4 BASIC5.69□□□□□ -1.5
SCN4AP35499 NDUFB4P8-201ENST00000435351 367 ntBASIC5.69□□□□□ -1.5
SCN4AP35499 RRM2P4-201ENST00000441721 562 ntBASIC5.69□□□□□ -1.5
SCN4AP35499 PRKACB-213ENST00000446538 1112 ntTSL 2 BASIC5.69□□□□□ -1.5
SCN4AP35499 MRPL35P2-201ENST00000448009 511 ntBASIC5.69□□□□□ -1.5
SCN4AP35499 AC090804.1-201ENST00000448870 490 ntBASIC5.69□□□□□ -1.5
SCN4AP35499 AL136537.1-202ENST00000501725 430 ntTSL 3 BASIC5.69□□□□□ -1.5
SCN4AP35499 ZBED3-AS1-209ENST00000512213 681 ntTSL 3 BASIC5.69□□□□□ -1.5
SCN4AP35499 AC023136.1-201ENST00000513093 1105 ntTSL 1 (best) BASIC5.69□□□□□ -1.5
SCN4AP35499 OR8A2P-201ENST00000528631 952 ntBASIC5.69□□□□□ -1.5
SCN4AP35499 RN7SL652P-201ENST00000577769 300 ntBASIC5.69□□□□□ -1.5
SCN4AP35499 AC006270.1-201ENST00000582889 478 ntTSL 3 BASIC5.69□□□□□ -1.5
Retrieved 100 of 98,524 protein–RNA pairs in 81.2 ms