Protein–RNA interactions for Protein: O60663

LMX1B, LIM homeobox transcription factor 1-beta, humanhuman

Predictions only

Length 402 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1BO60663 PTCD2-202ENST00000380639 11151 ntAPPRIS P1 TSL 5 BASIC4.69□□□□□ -1.66
LMX1BO60663 CCAR1-217ENST00000543719 3521 ntTSL 5 BASIC4.69□□□□□ -1.66
LMX1BO60663 OR2A7-202ENST00000641841 2062 ntAPPRIS P1 BASIC4.69□□□□□ -1.66
LMX1BO60663 PLD1-203ENST00000356327 5855 ntAPPRIS P1 TSL 1 (best) BASIC4.69□□□□□ -1.66
LMX1BO60663 AC138409.2-201ENST00000514048 5001 ntTSL 5 BASIC4.69□□□□□ -1.66
LMX1BO60663 RNMT-202ENST00000383314 6250 ntAPPRIS P1 TSL 1 (best) BASIC4.69□□□□□ -1.66
LMX1BO60663 CSNK1G3-205ENST00000510842 1979 ntAPPRIS ALT2 TSL 2 BASIC4.69□□□□□ -1.66
LMX1BO60663 CSPP1-201ENST00000262210 4367 ntAPPRIS P3 TSL 1 (best) BASIC4.69□□□□□ -1.66
LMX1BO60663 PSG1-202ENST00000312439 1882 ntAPPRIS ALT2 TSL 1 (best) BASIC4.69□□□□□ -1.66
LMX1BO60663 C4orf17-201ENST00000326581 1636 ntAPPRIS P2 TSL 1 (best) BASIC4.69□□□□□ -1.66
LMX1BO60663 PLEKHG7-201ENST00000344636 3868 ntTSL 5 BASIC4.69□□□□□ -1.66
LMX1BO60663 LMO3-209ENST00000447609 3365 ntAPPRIS P1 TSL 1 (best) BASIC4.69□□□□□ -1.66
LMX1BO60663 MIPOL1-204ENST00000539062 2389 ntTSL 1 (best) BASIC4.69□□□□□ -1.66
LMX1BO60663 ERVFRD-3-201ENST00000578561 1617 ntBASIC4.69□□□□□ -1.66
LMX1BO60663 AC018557.1-201ENST00000569274 1790 ntTSL 5 BASIC4.69□□□□□ -1.66
LMX1BO60663 MCM9-209ENST00000619706 4822 ntAPPRIS P1 TSL 5 BASIC4.69□□□□□ -1.66
LMX1BO60663 RNU5E-10P-201ENST00000363506 118 ntBASIC4.69□□□□□ -1.66
LMX1BO60663 RN7SKP28-201ENST00000364770 305 ntBASIC4.69□□□□□ -1.66
LMX1BO60663 TRAV9-1-201ENST00000390431 338 ntAPPRIS P1 BASIC4.69□□□□□ -1.66
LMX1BO60663 U3.23-201ENST00000391132 200 ntBASIC4.69□□□□□ -1.66
LMX1BO60663 RPL22P22-201ENST00000395439 379 ntBASIC4.69□□□□□ -1.66
LMX1BO60663 MTND4P13-201ENST00000402078 1023 ntBASIC4.69□□□□□ -1.66
LMX1BO60663 RN7SKP125-201ENST00000410481 302 ntBASIC4.69□□□□□ -1.66
LMX1BO60663 RPL12P9-201ENST00000412942 488 ntBASIC4.69□□□□□ -1.66
LMX1BO60663 AL158050.1-201ENST00000416077 457 ntBASIC4.69□□□□□ -1.66
LMX1BO60663 MTND2P16-201ENST00000419987 799 ntBASIC4.69□□□□□ -1.66
LMX1BO60663 RAB3GAP1-202ENST00000425393 1139 ntTSL 2 BASIC4.69□□□□□ -1.66
LMX1BO60663 AL359878.2-201ENST00000435531 407 ntTSL 3 BASIC4.69□□□□□ -1.66
LMX1BO60663 AC008269.1-201ENST00000438070 646 ntTSL 3 BASIC4.69□□□□□ -1.66
LMX1BO60663 RPL12P3-201ENST00000440080 396 ntBASIC4.69□□□□□ -1.66
LMX1BO60663 CEACAMP7-201ENST00000444105 496 ntBASIC4.69□□□□□ -1.66
LMX1BO60663 AC073174.1-201ENST00000444155 415 ntTSL 5 BASIC4.69□□□□□ -1.66
LMX1BO60663 Z77249.1-201ENST00000444622 1175 ntBASIC4.69□□□□□ -1.66
LMX1BO60663 AL161629.1-201ENST00000446201 457 ntTSL 3 BASIC4.69□□□□□ -1.66
LMX1BO60663 SDCBP-205ENST00000447267 772 ntTSL 3 BASIC4.69□□□□□ -1.66
LMX1BO60663 AL589963.1-201ENST00000449282 727 ntTSL 3 BASIC4.69□□□□□ -1.66
LMX1BO60663 AL022329.1-203ENST00000453811 451 ntTSL 3 BASIC4.69□□□□□ -1.66
LMX1BO60663 CBX1P2-201ENST00000453841 458 ntBASIC4.69□□□□□ -1.66
LMX1BO60663 AC069277.2-201ENST00000454211 432 ntBASIC4.69□□□□□ -1.66
LMX1BO60663 AL035090.1-201ENST00000454835 332 ntBASIC4.69□□□□□ -1.66
LMX1BO60663 AC090602.1-201ENST00000469695 252 ntBASIC4.69□□□□□ -1.66
LMX1BO60663 RPS21P4-201ENST00000487122 248 ntBASIC4.69□□□□□ -1.66
LMX1BO60663 CAPZA2-212ENST00000490693 809 ntTSL 2 BASIC4.69□□□□□ -1.66
LMX1BO60663 MTCO1P31-201ENST00000506355 492 ntBASIC4.69□□□□□ -1.66
LMX1BO60663 LINC01088-203ENST00000507476 785 ntTSL 3 BASIC4.69□□□□□ -1.66
LMX1BO60663 LINC02231-201ENST00000510459 447 ntTSL 3 BASIC4.69□□□□□ -1.66
LMX1BO60663 IMPA1P1-201ENST00000510718 842 ntBASIC4.69□□□□□ -1.66
LMX1BO60663 TMPRSS11BNL-205ENST00000514295 1262 ntBASIC4.69□□□□□ -1.66
LMX1BO60663 AC106791.1-201ENST00000514616 827 ntTSL 5 BASIC4.69□□□□□ -1.66
LMX1BO60663 RN7SKP99-201ENST00000517028 307 ntBASIC4.69□□□□□ -1.66
LMX1BO60663 AC087664.1-201ENST00000521456 358 ntTSL 3 BASIC4.69□□□□□ -1.66
LMX1BO60663 AC021451.1-201ENST00000523498 1129 ntBASIC4.69□□□□□ -1.66
LMX1BO60663 AP001318.3-202ENST00000528876 509 ntTSL 3 BASIC4.69□□□□□ -1.66
LMX1BO60663 AC007688.2-201ENST00000545158 369 ntTSL 3 BASIC4.69□□□□□ -1.66
LMX1BO60663 AC093014.1-201ENST00000548926 724 ntBASIC4.69□□□□□ -1.66
LMX1BO60663 PPFIA2-AS1-202ENST00000549161 1080 ntTSL 3 BASIC4.69□□□□□ -1.66
LMX1BO60663 AC124784.1-201ENST00000552426 571 ntTSL 3 BASIC4.69□□□□□ -1.66
LMX1BO60663 AC084756.1-201ENST00000558237 606 ntTSL 5 BASIC4.69□□□□□ -1.66
LMX1BO60663 AC046158.2-201ENST00000568764 707 ntTSL 3 BASIC4.69□□□□□ -1.66
LMX1BO60663 AC015845.1-202ENST00000580184 242 ntTSL 3 BASIC4.69□□□□□ -1.66
LMX1BO60663 MTCO2P2-201ENST00000591258 225 ntBASIC4.69□□□□□ -1.66
LMX1BO60663 SMIM24-204ENST00000591708 660 ntAPPRIS ALT2 TSL 2 BASIC4.69□□□□□ -1.66
LMX1BO60663 AC011492.1-201ENST00000600023 315 ntBASIC4.69□□□□□ -1.66
LMX1BO60663 AC093424.1-201ENST00000604999 338 ntBASIC4.69□□□□□ -1.66
LMX1BO60663 AL163952.1-201ENST00000612704 916 ntTSL 5 BASIC4.69□□□□□ -1.66
LMX1BO60663 AC008759.3-201ENST00000613300 508 ntBASIC4.69□□□□□ -1.66
LMX1BO60663 AC079395.3-201ENST00000615161 484 ntBASIC4.69□□□□□ -1.66
LMX1BO60663 AC009464.1-201ENST00000615731 469 ntBASIC4.69□□□□□ -1.66
LMX1BO60663 AL118522.2-201ENST00000616045 615 ntBASIC4.69□□□□□ -1.66
LMX1BO60663 CU634019.2-201ENST00000625184 593 ntTSL 3 BASIC4.69□□□□□ -1.66
LMX1BO60663 LINC02401-201ENST00000550185 3059 ntTSL 1 (best) BASIC4.69□□□□□ -1.66
LMX1BO60663 EMSY-206ENST00000525038 4376 ntTSL 1 (best) BASIC4.69□□□□□ -1.66
LMX1BO60663 ST8SIA4-201ENST00000231461 6303 ntAPPRIS P1 TSL 1 (best) BASIC4.69□□□□□ -1.66
LMX1BO60663 JCHAIN-201ENST00000254801 1438 ntAPPRIS P1 TSL 1 (best) BASIC4.69□□□□□ -1.66
LMX1BO60663 ZNF534-202ENST00000332323 2086 ntAPPRIS P4 TSL 1 (best) BASIC4.69□□□□□ -1.66
LMX1BO60663 ZNF410-211ENST00000555044 2601 ntAPPRIS P1 TSL 1 (best) BASIC4.69□□□□□ -1.66
LMX1BO60663 AC015813.1-203ENST00000585065 4722 ntTSL 2 BASIC4.69□□□□□ -1.66
LMX1BO60663 SLC15A2-201ENST00000295605 2379 ntTSL 2 BASIC4.69□□□□□ -1.66
LMX1BO60663 AC016576.1-201ENST00000637153 3585 ntTSL 5 BASIC4.69□□□□□ -1.66
LMX1BO60663 ZNF573-208ENST00000536220 2257 ntAPPRIS P1 TSL 3 BASIC4.69□□□□□ -1.66
LMX1BO60663 MEIOB-205ENST00000470044 1857 ntTSL 2 BASIC4.69□□□□□ -1.66
LMX1BO60663 CNOT6LP1-201ENST00000559681 1462 ntBASIC4.69□□□□□ -1.66
LMX1BO60663 AFTPH-204ENST00000409933 2811 ntAPPRIS ALT1 TSL 1 (best) BASIC4.68□□□□□ -1.66
LMX1BO60663 DLGAP5-202ENST00000395425 2954 ntAPPRIS ALT2 TSL 1 (best) BASIC4.68□□□□□ -1.66
LMX1BO60663 GLYATL1-202ENST00000317391 1627 ntAPPRIS ALT2 TSL 1 (best) BASIC4.68□□□□□ -1.66
LMX1BO60663 OR2J3-202ENST00000641151 3297 ntAPPRIS P1 BASIC4.68□□□□□ -1.66
LMX1BO60663 AC073136.1-201ENST00000449426 2884 ntBASIC4.68□□□□□ -1.66
LMX1BO60663 EIF3M-208ENST00000531120 5051 ntAPPRIS P1 TSL 1 (best) BASIC4.68□□□□□ -1.66
LMX1BO60663 SENP1-205ENST00000549595 1932 ntAPPRIS ALT1 TSL 5 BASIC4.68□□□□□ -1.66
LMX1BO60663 ARHGAP24-201ENST00000264343 4572 ntTSL 1 (best) BASIC4.68□□□□□ -1.66
LMX1BO60663 SAMD9L-204ENST00000437805 5757 ntAPPRIS P1 TSL 1 (best) BASIC4.68□□□□□ -1.66
LMX1BO60663 ERBIN-208ENST00000506030 4386 ntTSL 1 (best) BASIC4.68□□□□□ -1.66
LMX1BO60663 CRYAB-201ENST00000227251 848 ntAPPRIS P1 TSL 5 BASIC4.68□□□□□ -1.66
LMX1BO60663 EAF2-201ENST00000273668 992 ntAPPRIS P1 TSL 1 (best) BASIC4.68□□□□□ -1.66
LMX1BO60663 RN7SKP6-201ENST00000364795 319 ntBASIC4.68□□□□□ -1.66
LMX1BO60663 MIR551A-201ENST00000385042 96 ntBASIC4.68□□□□□ -1.66
LMX1BO60663 TRAJ58-201ENST00000390481 63 ntAPPRIS P1 BASIC4.68□□□□□ -1.66
LMX1BO60663 ANAPC10P1-201ENST00000395991 556 ntBASIC4.68□□□□□ -1.66
LMX1BO60663 NPM1P37-201ENST00000403105 874 ntBASIC4.68□□□□□ -1.66
LMX1BO60663 RPL37P18-201ENST00000411602 243 ntBASIC4.68□□□□□ -1.66
Retrieved 100 of 98,524 protein–RNA pairs in 73.7 ms