Protein–RNA interactions for Protein: A0A1B0GU29

SMIM28, Small integral membrane protein 28, humanhuman

Predictions only

Length 152 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMIM28A0A1B0GU29 GABRG1-201ENST00000295452 6785 ntAPPRIS P1 TSL 1 (best) BASIC5.11□□□□□ -1.59
SMIM28A0A1B0GU29 DHX40P1-201ENST00000588725 1412 ntBASIC5.11□□□□□ -1.59
SMIM28A0A1B0GU29 RFC3-202ENST00000434425 1461 ntTSL 5 BASIC5.11□□□□□ -1.59
SMIM28A0A1B0GU29 LINC00276-202ENST00000418420 3503 ntTSL 1 (best) BASIC5.11□□□□□ -1.59
SMIM28A0A1B0GU29 TDRD3-204ENST00000377894 2484 ntTSL 2 BASIC5.11□□□□□ -1.59
SMIM28A0A1B0GU29 ELMO1-207ENST00000442504 3154 ntAPPRIS P1 TSL 2 BASIC5.1□□□□□ -1.59
SMIM28A0A1B0GU29 R3HCC1L-201ENST00000298999 3379 ntAPPRIS P1 TSL 5 BASIC5.1□□□□□ -1.59
SMIM28A0A1B0GU29 RPGRIP1L-201ENST00000262135 8195 ntAPPRIS P3 TSL 5 BASIC5.1□□□□□ -1.59
SMIM28A0A1B0GU29 OR4K15-201ENST00000305051 1216 ntBASIC5.1□□□□□ -1.59
SMIM28A0A1B0GU29 RNU1-32P-201ENST00000363937 159 ntBASIC5.1□□□□□ -1.59
SMIM28A0A1B0GU29 RNA5SP332-201ENST00000391063 115 ntBASIC5.1□□□□□ -1.59
SMIM28A0A1B0GU29 KRTAP3-2-201ENST00000391587 702 ntAPPRIS P1 BASIC5.1□□□□□ -1.59
SMIM28A0A1B0GU29 AL590762.2-201ENST00000395798 571 ntBASIC5.1□□□□□ -1.59
SMIM28A0A1B0GU29 RPS3AP23-201ENST00000401762 784 ntBASIC5.1□□□□□ -1.59
SMIM28A0A1B0GU29 MAST4-207ENST00000407621 559 ntTSL 2 BASIC5.1□□□□□ -1.59
SMIM28A0A1B0GU29 DOCK9-207ENST00000442173 7643 ntAPPRIS ALT2 TSL 5 BASIC5.1□□□□□ -1.59
SMIM28A0A1B0GU29 BTF3P6-201ENST00000448054 499 ntBASIC5.1□□□□□ -1.59
SMIM28A0A1B0GU29 AC005518.1-201ENST00000448131 1116 ntTSL 2 BASIC5.1□□□□□ -1.59
SMIM28A0A1B0GU29 ZFRP1-201ENST00000457579 2970 ntBASIC5.1□□□□□ -1.59
SMIM28A0A1B0GU29 AC073218.1-201ENST00000458413 171 ntTSL 5 BASIC5.1□□□□□ -1.59
SMIM28A0A1B0GU29 RPL5P22-201ENST00000480199 884 ntBASIC5.1□□□□□ -1.59
SMIM28A0A1B0GU29 RN7SKP92-201ENST00000517266 244 ntBASIC5.1□□□□□ -1.59
SMIM28A0A1B0GU29 IGHVIII-47-1-201ENST00000518187 331 ntBASIC5.1□□□□□ -1.59
SMIM28A0A1B0GU29 AC064807.2-201ENST00000521188 672 ntTSL 3 BASIC5.1□□□□□ -1.59
SMIM28A0A1B0GU29 VNN2-206ENST00000525270 1608 ntAPPRIS ALT2 TSL 2 BASIC5.1□□□□□ -1.59
SMIM28A0A1B0GU29 AP001775.2-201ENST00000531710 334 ntTSL 2 BASIC5.1□□□□□ -1.59
SMIM28A0A1B0GU29 RERGL-203ENST00000538724 973 ntAPPRIS P1 TSL 2 BASIC5.1□□□□□ -1.59
SMIM28A0A1B0GU29 LINC01619-207ENST00000551843 2205 ntTSL 1 (best) BASIC5.1□□□□□ -1.59
SMIM28A0A1B0GU29 AC116158.1-201ENST00000560231 2129 ntBASIC5.1□□□□□ -1.59
SMIM28A0A1B0GU29 AC144836.1-201ENST00000575911 340 ntTSL 2 BASIC5.1□□□□□ -1.59
SMIM28A0A1B0GU29 AC209154.1-201ENST00000582156 337 ntBASIC5.1□□□□□ -1.59
SMIM28A0A1B0GU29 SYT14P1-202ENST00000600441 1448 ntBASIC5.1□□□□□ -1.59
SMIM28A0A1B0GU29 AC024075.3-201ENST00000601687 453 ntTSL 5 BASIC5.1□□□□□ -1.59
SMIM28A0A1B0GU29 LINC01587-204ENST00000623565 873 ntTSL 2 BASIC5.1□□□□□ -1.59
SMIM28A0A1B0GU29 AC048338.2-201ENST00000623601 684 ntTSL 5 BASIC5.1□□□□□ -1.59
SMIM28A0A1B0GU29 MIR7641-1-201ENST00000627518 61 ntBASIC5.1□□□□□ -1.59
SMIM28A0A1B0GU29 OR4K15-202ENST00000641512 1216 ntAPPRIS P1 BASIC5.1□□□□□ -1.59
SMIM28A0A1B0GU29 MAPK10-328ENST00000641553 4009 ntBASIC5.1□□□□□ -1.59
SMIM28A0A1B0GU29 GRIA2-202ENST00000296526 5621 ntAPPRIS P3 TSL 1 (best) BASIC5.1□□□□□ -1.59
SMIM28A0A1B0GU29 ATP8B4-211ENST00000559829 4894 ntAPPRIS P1 TSL 5 BASIC5.1□□□□□ -1.59
SMIM28A0A1B0GU29 CXCL9-201ENST00000264888 2740 ntAPPRIS P1 TSL 1 (best) BASIC5.1□□□□□ -1.59
SMIM28A0A1B0GU29 FCHO2-207ENST00000512348 2700 ntTSL 2 BASIC5.1□□□□□ -1.59
SMIM28A0A1B0GU29 TET1P1-201ENST00000426627 2301 ntBASIC5.09□□□□□ -1.59
SMIM28A0A1B0GU29 TJP1-202ENST00000356107 6747 ntAPPRIS ALT2 TSL 5 BASIC5.09□□□□□ -1.59
SMIM28A0A1B0GU29 AL031320.2-201ENST00000591892 2079 ntTSL 5 BASIC5.09□□□□□ -1.59
SMIM28A0A1B0GU29 AC093155.3-201ENST00000370548 2013 ntAPPRIS P1 TSL 2 BASIC5.09□□□□□ -1.59
SMIM28A0A1B0GU29 ACKR4-201ENST00000249887 1914 ntAPPRIS P1 TSL 1 (best) BASIC5.09□□□□□ -1.59
SMIM28A0A1B0GU29 TRIM69-201ENST00000329464 1901 ntAPPRIS P1 TSL 1 (best) BASIC5.09□□□□□ -1.59
SMIM28A0A1B0GU29 BBX-201ENST00000325805 3517 ntAPPRIS ALT2 TSL 1 (best) BASIC5.09□□□□□ -1.59
SMIM28A0A1B0GU29 CDY11P-201ENST00000447168 1651 ntBASIC5.09□□□□□ -1.59
SMIM28A0A1B0GU29 AL132640.2-201ENST00000559968 1698 ntBASIC5.09□□□□□ -1.59
SMIM28A0A1B0GU29 PDE4D-205ENST00000360047 3122 ntTSL 1 (best) BASIC5.09□□□□□ -1.59
SMIM28A0A1B0GU29 AC073136.1-201ENST00000449426 2884 ntBASIC5.09□□□□□ -1.59
SMIM28A0A1B0GU29 OR2J3-201ENST00000377169 1325 ntAPPRIS P1 BASIC5.09□□□□□ -1.59
SMIM28A0A1B0GU29 DDX18P5-201ENST00000534547 1306 ntBASIC5.09□□□□□ -1.59
SMIM28A0A1B0GU29 DNAJC12-201ENST00000225171 1201 ntAPPRIS P1 TSL 1 (best) BASIC5.09□□□□□ -1.59
SMIM28A0A1B0GU29 AC010132.2-201ENST00000295493 1043 ntBASIC5.09□□□□□ -1.59
SMIM28A0A1B0GU29 AC017079.1-201ENST00000333650 415 ntBASIC5.09□□□□□ -1.59
SMIM28A0A1B0GU29 SNORD113.2-201ENST00000364166 89 ntBASIC5.09□□□□□ -1.59
SMIM28A0A1B0GU29 HSPB11-202ENST00000371376 765 ntTSL 3 BASIC5.09□□□□□ -1.59
SMIM28A0A1B0GU29 CEBPZOS-205ENST00000406711 687 ntAPPRIS P1 TSL 5 BASIC5.09□□□□□ -1.59
SMIM28A0A1B0GU29 RN7SKP267-201ENST00000410381 285 ntBASIC5.09□□□□□ -1.59
SMIM28A0A1B0GU29 VN1R37P-201ENST00000419096 748 ntBASIC5.09□□□□□ -1.59
SMIM28A0A1B0GU29 VTI1BP4-201ENST00000427516 527 ntBASIC5.09□□□□□ -1.59
SMIM28A0A1B0GU29 H2AFZP5-201ENST00000446960 382 ntBASIC5.09□□□□□ -1.59
SMIM28A0A1B0GU29 AC108463.1-201ENST00000450258 347 ntBASIC5.09□□□□□ -1.59
SMIM28A0A1B0GU29 AC068707.1-201ENST00000451438 391 ntTSL 3 BASIC5.09□□□□□ -1.59
SMIM28A0A1B0GU29 AC009220.1-201ENST00000451614 275 ntBASIC5.09□□□□□ -1.59
SMIM28A0A1B0GU29 LINC01181-201ENST00000503718 556 ntTSL 4 BASIC5.09□□□□□ -1.59
SMIM28A0A1B0GU29 AC111000.3-201ENST00000508057 576 ntBASIC5.09□□□□□ -1.59
SMIM28A0A1B0GU29 AC079921.1-201ENST00000509449 946 ntTSL 3 BASIC5.09□□□□□ -1.59
SMIM28A0A1B0GU29 AC069272.1-201ENST00000514843 680 ntTSL 3 BASIC5.09□□□□□ -1.59
SMIM28A0A1B0GU29 CASP1-206ENST00000526568 1061 ntTSL 1 (best) BASIC5.09□□□□□ -1.59
SMIM28A0A1B0GU29 HNRNPRP2-201ENST00000528421 743 ntBASIC5.09□□□□□ -1.59
SMIM28A0A1B0GU29 AC010197.1-201ENST00000541860 578 ntTSL 4 BASIC5.09□□□□□ -1.59
SMIM28A0A1B0GU29 RAD51AP1-213ENST00000544927 787 ntTSL 4 BASIC5.09□□□□□ -1.59
SMIM28A0A1B0GU29 GSTP1P1-201ENST00000548078 319 ntBASIC5.09□□□□□ -1.59
SMIM28A0A1B0GU29 AC109630.1-202ENST00000560552 579 ntTSL 4 BASIC5.09□□□□□ -1.59
SMIM28A0A1B0GU29 ALOX12P2-208ENST00000574183 519 ntTSL 3 BASIC5.09□□□□□ -1.59
SMIM28A0A1B0GU29 DAB1-AS1-208ENST00000586465 748 ntTSL 5 BASIC5.09□□□□□ -1.59
SMIM28A0A1B0GU29 AL050403.2-203ENST00000603180 558 ntTSL 4 BASIC5.09□□□□□ -1.59
SMIM28A0A1B0GU29 AL583832.1-201ENST00000603227 784 ntBASIC5.09□□□□□ -1.59
SMIM28A0A1B0GU29 AC015849.6-201ENST00000605454 474 ntBASIC5.09□□□□□ -1.59
SMIM28A0A1B0GU29 LINC00706-201ENST00000628989 699 ntTSL 3 BASIC5.09□□□□□ -1.59
SMIM28A0A1B0GU29 RAP1GDS1-206ENST00000453712 2470 ntAPPRIS ALT1 TSL 1 (best) BASIC5.09□□□□□ -1.59
SMIM28A0A1B0GU29 PIGN-241ENST00000640050 3154 ntAPPRIS P1 TSL 5 BASIC5.09□□□□□ -1.59
SMIM28A0A1B0GU29 OR56A4-202ENST00000641156 3768 ntAPPRIS P1 BASIC5.09□□□□□ -1.6
SMIM28A0A1B0GU29 R3HDM1-201ENST00000264160 4648 ntAPPRIS P3 TSL 1 (best) BASIC5.09□□□□□ -1.6
SMIM28A0A1B0GU29 AC100778.3-201ENST00000580060 1750 ntBASIC5.09□□□□□ -1.6
SMIM28A0A1B0GU29 UGT2A1-203ENST00000503640 2595 ntAPPRIS P1 TSL 1 (best) BASIC5.09□□□□□ -1.6
SMIM28A0A1B0GU29 SERPINA7-202ENST00000372563 1600 ntAPPRIS P1 TSL 5 BASIC5.08□□□□□ -1.6
SMIM28A0A1B0GU29 SSR1-202ENST00000397511 3248 ntTSL 5 BASIC5.08□□□□□ -1.6
SMIM28A0A1B0GU29 OR2AT4-205ENST00000641931 8357 ntAPPRIS P1 BASIC5.08□□□□□ -1.6
SMIM28A0A1B0GU29 HGF-201ENST00000222390 5989 ntAPPRIS P3 TSL 1 (best) BASIC5.08□□□□□ -1.6
SMIM28A0A1B0GU29 SLC10A7-203ENST00000432059 3747 ntTSL 1 (best) BASIC5.08□□□□□ -1.6
SMIM28A0A1B0GU29 HDAC9-204ENST00000406451 9705 ntAPPRIS ALT1 TSL 1 (best) BASIC5.08□□□□□ -1.6
SMIM28A0A1B0GU29 BAALC-AS1-201ENST00000499522 1353 ntTSL 5 BASIC5.08□□□□□ -1.6
SMIM28A0A1B0GU29 SDR42E1-201ENST00000328945 11566 ntAPPRIS P1 TSL 1 (best) BASIC5.08□□□□□ -1.6
SMIM28A0A1B0GU29 TTF2-201ENST00000369466 9462 ntAPPRIS P1 TSL 1 (best) BASIC5.08□□□□□ -1.6
SMIM28A0A1B0GU29 PRR4-201ENST00000228811 563 ntAPPRIS P3 TSL 1 (best) BASIC5.08□□□□□ -1.6
Retrieved 100 of 98,524 protein–RNA pairs in 118.9 ms