Protein–RNA interactions for Protein: Q9Y5H4

PCDHGA1, Protocadherin gamma-A1, humanhuman

Predictions only

Length 931 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHGA1Q9Y5H4 AC079075.1-201ENST00000559543 878 ntBASIC5.13□□□□□ -1.59
PCDHGA1Q9Y5H4 AC022166.1-201ENST00000567851 581 ntTSL 5 BASIC5.13□□□□□ -1.59
PCDHGA1Q9Y5H4 RN7SL356P-201ENST00000582228 248 ntBASIC5.13□□□□□ -1.59
PCDHGA1Q9Y5H4 CERS6-AS1-204ENST00000599361 536 ntTSL 4 BASIC5.13□□□□□ -1.59
PCDHGA1Q9Y5H4 AC005252.1-201ENST00000604518 1063 ntBASIC5.13□□□□□ -1.59
PCDHGA1Q9Y5H4 AC073111.2-201ENST00000605657 1075 ntBASIC5.13□□□□□ -1.59
PCDHGA1Q9Y5H4 AC243654.3-201ENST00000617427 735 ntTSL 5 BASIC5.13□□□□□ -1.59
PCDHGA1Q9Y5H4 AL118508.4-201ENST00000624142 1176 ntBASIC5.13□□□□□ -1.59
PCDHGA1Q9Y5H4 MIR7641-1-201ENST00000627518 61 ntBASIC5.13□□□□□ -1.59
PCDHGA1Q9Y5H4 SMARCA2-231ENST00000634931 939 ntTSL 5 BASIC5.13□□□□□ -1.59
PCDHGA1Q9Y5H4 KMT5B-215ENST00000615954 4306 ntAPPRIS P1 TSL 1 (best) BASIC5.13□□□□□ -1.59
PCDHGA1Q9Y5H4 PHF11-215ENST00000488958 1318 ntAPPRIS ALT2 TSL 1 (best) BASIC5.13□□□□□ -1.59
PCDHGA1Q9Y5H4 AC007557.3-201ENST00000418591 3135 ntTSL 2 BASIC5.13□□□□□ -1.59
PCDHGA1Q9Y5H4 PPP1R9A-206ENST00000433360 5369 ntTSL 1 (best) BASIC5.13□□□□□ -1.59
PCDHGA1Q9Y5H4 AK9-204ENST00000424296 6326 ntAPPRIS P1 TSL 5 BASIC5.13□□□□□ -1.59
PCDHGA1Q9Y5H4 UNC80-203ENST00000439458 13562 ntAPPRIS P1 TSL 5 BASIC5.13□□□□□ -1.59
PCDHGA1Q9Y5H4 NELL2-205ENST00000452445 3196 ntAPPRIS P1 TSL 1 (best) BASIC5.13□□□□□ -1.59
PCDHGA1Q9Y5H4 MAP3K7-203ENST00000369327 4558 ntTSL 1 (best) BASIC5.13□□□□□ -1.59
PCDHGA1Q9Y5H4 TCP11X1-202ENST00000622971 1372 ntBASIC5.13□□□□□ -1.59
PCDHGA1Q9Y5H4 CASC19-221ENST00000641309 1382 ntBASIC5.13□□□□□ -1.59
PCDHGA1Q9Y5H4 PCGF5-201ENST00000336126 7018 ntAPPRIS P1 TSL 1 (best) BASIC5.13□□□□□ -1.59
PCDHGA1Q9Y5H4 ZNF788-203ENST00000430298 3941 ntTSL 2 BASIC5.13□□□□□ -1.59
PCDHGA1Q9Y5H4 NOSTRIN-206ENST00000444448 2537 ntTSL 5 BASIC5.13□□□□□ -1.59
PCDHGA1Q9Y5H4 TCN1-201ENST00000257264 1582 ntAPPRIS P1 TSL 1 (best) BASIC5.12□□□□□ -1.59
PCDHGA1Q9Y5H4 KCNRG-202ENST00000360473 1623 ntTSL 1 (best) BASIC5.12□□□□□ -1.59
PCDHGA1Q9Y5H4 TCF7L2-206ENST00000355995 4073 ntTSL 1 (best) BASIC5.12□□□□□ -1.59
PCDHGA1Q9Y5H4 LZTFL1-216ENST00000539217 4113 ntTSL 2 BASIC5.12□□□□□ -1.59
PCDHGA1Q9Y5H4 CRISP1-204ENST00000507853 1793 ntTSL 1 (best) BASIC5.12□□□□□ -1.59
PCDHGA1Q9Y5H4 LRRC8B-201ENST00000330947 7593 ntAPPRIS P1 TSL 5 BASIC5.12□□□□□ -1.59
PCDHGA1Q9Y5H4 OR5AS1-201ENST00000313555 975 ntAPPRIS P1 BASIC5.12□□□□□ -1.59
PCDHGA1Q9Y5H4 OR6C65-201ENST00000379665 1076 ntAPPRIS P1 BASIC5.12□□□□□ -1.59
PCDHGA1Q9Y5H4 PLIN2-202ENST00000380464 655 ntTSL 2 BASIC5.12□□□□□ -1.59
PCDHGA1Q9Y5H4 RNU6-152P-201ENST00000384037 107 ntBASIC5.12□□□□□ -1.59
PCDHGA1Q9Y5H4 ARL4A-204ENST00000396664 1144 ntAPPRIS P1 TSL 1 (best) BASIC5.12□□□□□ -1.59
PCDHGA1Q9Y5H4 MTERF4-204ENST00000406593 802 ntTSL 2 BASIC5.12□□□□□ -1.59
PCDHGA1Q9Y5H4 OR2A25-201ENST00000408898 1014 ntAPPRIS P1 BASIC5.12□□□□□ -1.59
PCDHGA1Q9Y5H4 RPL26P37-201ENST00000411983 438 ntBASIC5.12□□□□□ -1.59
PCDHGA1Q9Y5H4 LINC00161-201ENST00000412526 870 ntTSL 2 BASIC5.12□□□□□ -1.59
PCDHGA1Q9Y5H4 BMS1P17-201ENST00000413661 723 ntTSL 1 (best) BASIC5.12□□□□□ -1.59
PCDHGA1Q9Y5H4 AC009302.1-201ENST00000417147 390 ntBASIC5.12□□□□□ -1.59
PCDHGA1Q9Y5H4 Z82198.2-201ENST00000434741 567 ntTSL 4 BASIC5.12□□□□□ -1.59
PCDHGA1Q9Y5H4 MRPS33P4-201ENST00000434892 317 ntBASIC5.12□□□□□ -1.59
PCDHGA1Q9Y5H4 AL450263.2-201ENST00000439400 589 ntBASIC5.12□□□□□ -1.59
PCDHGA1Q9Y5H4 USP12-AS1-201ENST00000440657 268 ntTSL 5 BASIC5.12□□□□□ -1.59
PCDHGA1Q9Y5H4 AC099063.2-201ENST00000446360 662 ntBASIC5.12□□□□□ -1.59
PCDHGA1Q9Y5H4 AC093581.1-201ENST00000446411 461 ntTSL 2 BASIC5.12□□□□□ -1.59
PCDHGA1Q9Y5H4 IGBP1P3-201ENST00000447449 1000 ntBASIC5.12□□□□□ -1.59
PCDHGA1Q9Y5H4 AL157827.1-201ENST00000447622 132 ntBASIC5.12□□□□□ -1.59
PCDHGA1Q9Y5H4 KCNMB2-AS1-205ENST00000451742 844 ntTSL 4 BASIC5.12□□□□□ -1.59
PCDHGA1Q9Y5H4 SNORD125-201ENST00000459538 96 ntBASIC5.12□□□□□ -1.59
PCDHGA1Q9Y5H4 AC092754.1-201ENST00000472975 479 ntBASIC5.12□□□□□ -1.59
PCDHGA1Q9Y5H4 RN7SL481P-201ENST00000477764 299 ntBASIC5.12□□□□□ -1.59
PCDHGA1Q9Y5H4 EIF4E-204ENST00000504432 1132 ntTSL 5 BASIC5.12□□□□□ -1.59
PCDHGA1Q9Y5H4 AC021087.2-201ENST00000504656 1203 ntBASIC5.12□□□□□ -1.59
PCDHGA1Q9Y5H4 AC024587.2-201ENST00000509458 805 ntTSL 3 BASIC5.12□□□□□ -1.59
PCDHGA1Q9Y5H4 HHIP-AS1-203ENST00000512359 646 ntTSL 3 BASIC5.12□□□□□ -1.59
PCDHGA1Q9Y5H4 AC107918.3-201ENST00000533272 382 ntBASIC5.12□□□□□ -1.59
PCDHGA1Q9Y5H4 SNHG1-218ENST00000541615 748 ntTSL 5 BASIC5.12□□□□□ -1.59
PCDHGA1Q9Y5H4 AC008033.2-201ENST00000542626 177 ntBASIC5.12□□□□□ -1.59
PCDHGA1Q9Y5H4 BNIP3P1-201ENST00000547295 580 ntBASIC5.12□□□□□ -1.59
PCDHGA1Q9Y5H4 AC025263.2-201ENST00000550437 548 ntAPPRIS P1 TSL 5 BASIC5.12□□□□□ -1.59
PCDHGA1Q9Y5H4 MGAT4C-206ENST00000552435 550 ntTSL 4 BASIC5.12□□□□□ -1.59
PCDHGA1Q9Y5H4 AC131532.1-201ENST00000555596 519 ntTSL 4 BASIC5.12□□□□□ -1.59
PCDHGA1Q9Y5H4 AL355076.2-201ENST00000555736 544 ntTSL 5 BASIC5.12□□□□□ -1.59
PCDHGA1Q9Y5H4 LINC02188-201ENST00000562064 550 ntTSL 4 BASIC5.12□□□□□ -1.59
PCDHGA1Q9Y5H4 MIR378J-201ENST00000611988 109 ntBASIC5.12□□□□□ -1.59
PCDHGA1Q9Y5H4 AC087385.3-201ENST00000620477 187 ntBASIC5.12□□□□□ -1.59
PCDHGA1Q9Y5H4 LINC01002-236ENST00000634022 378 ntTSL 5 BASIC5.12□□□□□ -1.59
PCDHGA1Q9Y5H4 AC092079.1-201ENST00000558620 1985 ntBASIC5.12□□□□□ -1.59
PCDHGA1Q9Y5H4 SCN2A-203ENST00000375437 8792 ntAPPRIS ALT1 TSL 5 BASIC5.12□□□□□ -1.59
PCDHGA1Q9Y5H4 PTPRO-204ENST00000445537 4062 ntAPPRIS ALT2 TSL 2 BASIC5.12□□□□□ -1.59
PCDHGA1Q9Y5H4 TRAPPC13-201ENST00000231526 2715 ntAPPRIS ALT1 TSL 5 BASIC5.12□□□□□ -1.59
PCDHGA1Q9Y5H4 LINC00824-203ENST00000520206 2055 ntTSL 1 (best) BASIC5.12□□□□□ -1.59
PCDHGA1Q9Y5H4 LRRC49-201ENST00000260382 2784 ntAPPRIS P3 TSL 1 (best) BASIC5.12□□□□□ -1.59
PCDHGA1Q9Y5H4 CYP7A1-201ENST00000301645 2950 ntAPPRIS P1 TSL 1 (best) BASIC5.12□□□□□ -1.59
PCDHGA1Q9Y5H4 TSPAN6-204ENST00000612152 3796 ntTSL 5 BASIC5.12□□□□□ -1.59
PCDHGA1Q9Y5H4 OPRM1-215ENST00000520708 1519 ntTSL 1 (best) BASIC5.12□□□□□ -1.59
PCDHGA1Q9Y5H4 ZNF248-201ENST00000357328 4795 ntAPPRIS P1 TSL 2 BASIC5.12□□□□□ -1.59
PCDHGA1Q9Y5H4 CACNB4-243ENST00000637217 8188 ntTSL 5 BASIC5.12□□□□□ -1.59
PCDHGA1Q9Y5H4 IPCEF1-202ENST00000367220 1658 ntAPPRIS ALT2 TSL 2 BASIC5.12□□□□□ -1.59
PCDHGA1Q9Y5H4 CFL2-201ENST00000298159 6747 ntAPPRIS P1 TSL 1 (best) BASIC5.12□□□□□ -1.59
PCDHGA1Q9Y5H4 LINC01676-202ENST00000435253 1849 ntTSL 1 (best) BASIC5.11□□□□□ -1.59
PCDHGA1Q9Y5H4 BX005019.1-201ENST00000561881 1810 ntBASIC5.11□□□□□ -1.59
PCDHGA1Q9Y5H4 PPP2R2A-201ENST00000315985 1878 ntAPPRIS ALT1 TSL 2 BASIC5.11□□□□□ -1.59
PCDHGA1Q9Y5H4 SENP1-205ENST00000549595 1932 ntAPPRIS ALT1 TSL 5 BASIC5.11□□□□□ -1.59
PCDHGA1Q9Y5H4 ADAMDEC1-204ENST00000522298 2044 ntAPPRIS ALT2 TSL 2 BASIC5.11□□□□□ -1.59
PCDHGA1Q9Y5H4 CLEC1B-204ENST00000428126 3054 ntTSL 1 (best) BASIC5.11□□□□□ -1.59
PCDHGA1Q9Y5H4 MEPE-202ENST00000395102 2123 ntAPPRIS ALT2 TSL 5 BASIC5.11□□□□□ -1.59
PCDHGA1Q9Y5H4 NSD1-202ENST00000354179 12195 ntTSL 5 BASIC5.11□□□□□ -1.59
PCDHGA1Q9Y5H4 KIF2A-203ENST00000407818 2315 ntTSL 1 (best) BASIC5.11□□□□□ -1.59
PCDHGA1Q9Y5H4 ZNF280B-201ENST00000613655 3714 ntAPPRIS P1 TSL 5 BASIC5.11□□□□□ -1.59
PCDHGA1Q9Y5H4 CLEC7A-203ENST00000310002 425 ntTSL 1 (best) BASIC5.11□□□□□ -1.59
PCDHGA1Q9Y5H4 RNU4-44P-201ENST00000363050 141 ntBASIC5.11□□□□□ -1.59
PCDHGA1Q9Y5H4 RNA5SP326-201ENST00000363209 110 ntBASIC5.11□□□□□ -1.59
PCDHGA1Q9Y5H4 SPATA42-201ENST00000369989 535 ntTSL 1 (best) BASIC5.11□□□□□ -1.59
PCDHGA1Q9Y5H4 GJA6P-201ENST00000415117 1042 ntBASIC5.11□□□□□ -1.59
PCDHGA1Q9Y5H4 OR10T1P-201ENST00000424327 947 ntBASIC5.11□□□□□ -1.59
PCDHGA1Q9Y5H4 AC068481.1-202ENST00000428379 555 ntTSL 4 BASIC5.11□□□□□ -1.59
PCDHGA1Q9Y5H4 VDAC1P6-201ENST00000430062 855 ntBASIC5.11□□□□□ -1.59
PCDHGA1Q9Y5H4 TEX41-205ENST00000431734 529 ntTSL 4 BASIC5.11□□□□□ -1.59
Retrieved 100 of 98,524 protein–RNA pairs in 76.9 ms