Protein–RNA interactions for Protein: Q96QK1

VPS35, Vacuolar protein sorting-associated protein 35, humanhuman

Predictions only

Length 796 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35Q96QK1 AC100784.1-201ENST00000522790 310 ntBASIC5.02□□□□□ -1.61
VPS35Q96QK1 C14orf105-210ENST00000534126 1030 ntAPPRIS ALT1 TSL 1 (best) BASIC5.02□□□□□ -1.61
VPS35Q96QK1 SDHAF2-208ENST00000543265 438 ntTSL 5 BASIC5.02□□□□□ -1.61
VPS35Q96QK1 NDUFB4P11-201ENST00000560510 395 ntBASIC5.02□□□□□ -1.61
VPS35Q96QK1 AC005324.5-201ENST00000584540 571 ntTSL 5 BASIC5.02□□□□□ -1.61
VPS35Q96QK1 AC105254.2-201ENST00000603636 436 ntBASIC5.02□□□□□ -1.61
VPS35Q96QK1 AC211433.2-201ENST00000608433 387 ntBASIC5.02□□□□□ -1.61
VPS35Q96QK1 OR10X1-201ENST00000623167 981 ntAPPRIS P1 BASIC5.02□□□□□ -1.61
VPS35Q96QK1 FP236315.3-201ENST00000623587 307 ntTSL 2 BASIC5.02□□□□□ -1.61
VPS35Q96QK1 CTSLP2-203ENST00000628708 493 ntTSL 5 BASIC5.02□□□□□ -1.61
VPS35Q96QK1 SMARCA2-201ENST00000302401 2242 ntTSL 2 BASIC5.02□□□□□ -1.61
VPS35Q96QK1 PTK2-212ENST00000519419 4439 ntTSL 5 BASIC5.02□□□□□ -1.61
VPS35Q96QK1 AC011447.7-201ENST00000624228 1590 ntBASIC5.02□□□□□ -1.61
VPS35Q96QK1 Z95327.2-201ENST00000414579 1873 ntBASIC5.02□□□□□ -1.61
VPS35Q96QK1 FZD6-205ENST00000522566 3719 ntAPPRIS P1 TSL 1 (best) BASIC5.02□□□□□ -1.61
VPS35Q96QK1 ZNF12-203ENST00000404360 4474 ntTSL 1 (best) BASIC5.02□□□□□ -1.61
VPS35Q96QK1 FAM184A-204ENST00000368475 3392 ntTSL 2 BASIC5.02□□□□□ -1.61
VPS35Q96QK1 OBSCN-210ENST00000570156 26925 ntAPPRIS P1 TSL 5 BASIC5.02□□□□□ -1.61
VPS35Q96QK1 DNAH7-202ENST00000409063 1845 ntTSL 1 (best) BASIC5.02□□□□□ -1.61
VPS35Q96QK1 PAK3-213ENST00000620137 2130 ntTSL 5 BASIC5.02□□□□□ -1.61
VPS35Q96QK1 C2CD6-202ENST00000439140 5512 ntAPPRIS ALT2 TSL 1 (best) BASIC5.01□□□□□ -1.61
VPS35Q96QK1 ABI1-210ENST00000376170 3362 ntTSL 1 (best) BASIC5.01□□□□□ -1.61
VPS35Q96QK1 BX664718.1-201ENST00000439824 3224 ntTSL 2 BASIC5.01□□□□□ -1.61
VPS35Q96QK1 BMPR2-201ENST00000374574 9683 ntTSL 2 BASIC5.01□□□□□ -1.61
VPS35Q96QK1 AC000374.1-201ENST00000434698 1745 ntBASIC5.01□□□□□ -1.61
VPS35Q96QK1 FAS-205ENST00000357339 1044 ntAPPRIS ALT2 TSL 1 (best) BASIC5.01□□□□□ -1.61
VPS35Q96QK1 MIR365B-201ENST00000362317 111 ntBASIC5.01□□□□□ -1.61
VPS35Q96QK1 RNU4-4P-201ENST00000364588 130 ntBASIC5.01□□□□□ -1.61
VPS35Q96QK1 RNU6-729P-201ENST00000384399 107 ntBASIC5.01□□□□□ -1.61
VPS35Q96QK1 TRAJ58-201ENST00000390481 63 ntAPPRIS P1 BASIC5.01□□□□□ -1.61
VPS35Q96QK1 AL645927.1-201ENST00000396783 406 ntBASIC5.01□□□□□ -1.61
VPS35Q96QK1 ATP5HP3-201ENST00000396994 486 ntBASIC5.01□□□□□ -1.61
VPS35Q96QK1 VDAC2P1-201ENST00000399358 958 ntBASIC5.01□□□□□ -1.61
VPS35Q96QK1 CHMP1B2P-201ENST00000399581 597 ntBASIC5.01□□□□□ -1.61
VPS35Q96QK1 RNF212B-201ENST00000399905 1071 ntTSL 5 BASIC5.01□□□□□ -1.61
VPS35Q96QK1 Z97832.1-201ENST00000402490 328 ntBASIC5.01□□□□□ -1.61
VPS35Q96QK1 RPL21P67-201ENST00000402896 478 ntBASIC5.01□□□□□ -1.61
VPS35Q96QK1 AL049812.3-201ENST00000412348 417 ntTSL 3 BASIC5.01□□□□□ -1.61
VPS35Q96QK1 IFNA17-201ENST00000413767 980 ntAPPRIS P1 BASIC5.01□□□□□ -1.61
VPS35Q96QK1 AC093162.1-201ENST00000419682 124 ntBASIC5.01□□□□□ -1.61
VPS35Q96QK1 CYP1B1-AS1-202ENST00000427168 484 ntTSL 4 BASIC5.01□□□□□ -1.61
VPS35Q96QK1 MIR99AHG-205ENST00000435697 716 ntTSL 2 BASIC5.01□□□□□ -1.61
VPS35Q96QK1 RPL34P20-201ENST00000442771 351 ntBASIC5.01□□□□□ -1.61
VPS35Q96QK1 AC092647.3-201ENST00000443044 633 ntBASIC5.01□□□□□ -1.61
VPS35Q96QK1 C1DP3-201ENST00000455013 423 ntBASIC5.01□□□□□ -1.61
VPS35Q96QK1 CREM-220ENST00000463314 964 ntTSL 2 BASIC5.01□□□□□ -1.61
VPS35Q96QK1 AC026316.2-201ENST00000473110 263 ntTSL 3 BASIC5.01□□□□□ -1.61
VPS35Q96QK1 RN7SL244P-201ENST00000493405 297 ntBASIC5.01□□□□□ -1.61
VPS35Q96QK1 AC055758.1-201ENST00000494509 569 ntTSL 3 BASIC5.01□□□□□ -1.61
VPS35Q96QK1 MYL12BP2-201ENST00000503948 512 ntBASIC5.01□□□□□ -1.61
VPS35Q96QK1 AC010350.1-201ENST00000504908 231 ntBASIC5.01□□□□□ -1.61
VPS35Q96QK1 RNA5SP43-201ENST00000516559 110 ntBASIC5.01□□□□□ -1.61
VPS35Q96QK1 RNU6ATAC24P-201ENST00000516811 135 ntBASIC5.01□□□□□ -1.61
VPS35Q96QK1 AC027308.1-201ENST00000517993 110 ntBASIC5.01□□□□□ -1.61
VPS35Q96QK1 EIF1AXP2-201ENST00000555940 413 ntBASIC5.01□□□□□ -1.61
VPS35Q96QK1 AC104938.1-202ENST00000563041 630 ntTSL 3 BASIC5.01□□□□□ -1.61
VPS35Q96QK1 SNORD39.2-201ENST00000579995 76 ntBASIC5.01□□□□□ -1.61
VPS35Q96QK1 MIR4691-201ENST00000583764 85 ntBASIC5.01□□□□□ -1.61
VPS35Q96QK1 AC006504.5-212ENST00000587188 746 ntTSL 3 BASIC5.01□□□□□ -1.61
VPS35Q96QK1 PCDH9-203ENST00000456367 5072 ntTSL 1 (best) BASIC5.01□□□□□ -1.61
VPS35Q96QK1 ATF7IP2-202ENST00000356427 3463 ntAPPRIS P1 TSL 1 (best) BASIC5.01□□□□□ -1.61
VPS35Q96QK1 AL731566.1-201ENST00000620490 1937 ntBASIC5.01□□□□□ -1.61
VPS35Q96QK1 AL158066.1-201ENST00000451298 3796 ntTSL 2 BASIC5.01□□□□□ -1.61
VPS35Q96QK1 AC092821.1-204ENST00000518709 3552 ntTSL 5 BASIC5□□□□□ -1.61
VPS35Q96QK1 MAP2-202ENST00000360351 9711 ntAPPRIS P2 TSL 5 BASIC5□□□□□ -1.61
VPS35Q96QK1 BMPR1APS1-201ENST00000403332 1598 ntBASIC5□□□□□ -1.61
VPS35Q96QK1 CASC19-281ENST00000642118 1554 ntBASIC5□□□□□ -1.61
VPS35Q96QK1 GRIK2-201ENST00000318991 4317 ntTSL 5 BASIC5□□□□□ -1.61
VPS35Q96QK1 GABRG2-202ENST00000361925 3767 ntTSL 3 BASIC5□□□□□ -1.61
VPS35Q96QK1 AC107021.2-201ENST00000567714 2095 ntBASIC5□□□□□ -1.61
VPS35Q96QK1 EPHA7-202ENST00000369303 6588 ntAPPRIS P1 TSL 1 (best) BASIC5□□□□□ -1.61
VPS35Q96QK1 ITGB1-205ENST00000423113 3729 ntAPPRIS ALT1 TSL 5 BASIC5□□□□□ -1.61
VPS35Q96QK1 AC007996.1-201ENST00000620414 2821 ntBASIC5□□□□□ -1.61
VPS35Q96QK1 AC090826.1-202ENST00000562009 3337 ntTSL 1 (best) BASIC5□□□□□ -1.61
VPS35Q96QK1 ELOC-201ENST00000284811 683 ntAPPRIS P1 TSL 3 BASIC5□□□□□ -1.61
VPS35Q96QK1 BMS1P3-201ENST00000372011 932 ntBASIC5□□□□□ -1.61
VPS35Q96QK1 U3.32-201ENST00000408116 212 ntBASIC5□□□□□ -1.61
VPS35Q96QK1 PPP3R1-203ENST00000409752 851 ntTSL 3 BASIC5□□□□□ -1.61
VPS35Q96QK1 AC013472.2-201ENST00000416226 306 ntTSL 3 BASIC5□□□□□ -1.61
VPS35Q96QK1 AL136368.1-201ENST00000416249 401 ntTSL 2 BASIC5□□□□□ -1.61
VPS35Q96QK1 PCBP1-AS1-224ENST00000429599 1045 ntTSL 5 BASIC5□□□□□ -1.61
VPS35Q96QK1 AL353689.2-201ENST00000433837 440 ntTSL 3 BASIC5□□□□□ -1.61
VPS35Q96QK1 KCNIP1-205ENST00000434108 726 ntTSL 1 (best) BASIC5□□□□□ -1.61
VPS35Q96QK1 AL392003.1-201ENST00000434394 243 ntBASIC5□□□□□ -1.61
VPS35Q96QK1 TMX2P1-201ENST00000436507 708 ntBASIC5□□□□□ -1.61
VPS35Q96QK1 PTMAP6-201ENST00000439110 327 ntBASIC5□□□□□ -1.61
VPS35Q96QK1 RAB28P3-201ENST00000448325 597 ntBASIC5□□□□□ -1.61
VPS35Q96QK1 IGHV5-78-201ENST00000450948 295 ntBASIC5□□□□□ -1.61
VPS35Q96QK1 Z99916.1-201ENST00000454253 482 ntTSL 3 BASIC5□□□□□ -1.61
VPS35Q96QK1 AC245028.2-201ENST00000458673 253 ntBASIC5□□□□□ -1.61
VPS35Q96QK1 AC107015.1-201ENST00000466902 747 ntBASIC5□□□□□ -1.61
VPS35Q96QK1 RN7SL329P-201ENST00000467740 299 ntBASIC5□□□□□ -1.61
VPS35Q96QK1 AC004453.1-201ENST00000487895 408 ntBASIC5□□□□□ -1.61
VPS35Q96QK1 TRIM36-IT1-201ENST00000503723 881 ntBASIC5□□□□□ -1.61
VPS35Q96QK1 HMGB1P19-201ENST00000517578 577 ntBASIC5□□□□□ -1.61
VPS35Q96QK1 AP001970.1-201ENST00000531681 701 ntTSL 3 BASIC5□□□□□ -1.61
VPS35Q96QK1 AC005906.2-204ENST00000541095 481 ntTSL 3 BASIC5□□□□□ -1.61
VPS35Q96QK1 AC006349.1-201ENST00000555526 235 ntBASIC5□□□□□ -1.61
VPS35Q96QK1 AC044860.2-201ENST00000561005 179 ntBASIC5□□□□□ -1.61
VPS35Q96QK1 LINC02137-203ENST00000567448 930 ntTSL 5 BASIC5□□□□□ -1.61
Retrieved 100 of 98,524 protein–RNA pairs in 78.6 ms