Protein–RNA interactions for Protein: Q3V6T2

CCDC88A, Girdin, humanhuman

Predictions only

Length 1,871 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88AQ3V6T2 AC124067.3-201ENST00000522643 847 ntTSL 3 BASIC5.92□□□□□ -1.46
CCDC88AQ3V6T2 TMEM106C-220ENST00000552561 810 ntAPPRIS P1 TSL 1 (best) BASIC5.92□□□□□ -1.46
CCDC88AQ3V6T2 LINC02284-202ENST00000560924 566 ntTSL 4 BASIC5.92□□□□□ -1.46
CCDC88AQ3V6T2 OCLM-201ENST00000574641 884 ntAPPRIS P1 BASIC5.92□□□□□ -1.46
CCDC88AQ3V6T2 RN7SL802P-201ENST00000577858 299 ntBASIC5.92□□□□□ -1.46
CCDC88AQ3V6T2 AP005059.1-201ENST00000578391 456 ntTSL 2 BASIC5.92□□□□□ -1.46
CCDC88AQ3V6T2 IGKV1OR2-118-201ENST00000603238 347 ntBASIC5.92□□□□□ -1.46
CCDC88AQ3V6T2 LINC00904-201ENST00000604453 471 ntTSL 2 BASIC5.92□□□□□ -1.46
CCDC88AQ3V6T2 ENKUR-205ENST00000615958 3294 ntTSL 1 (best) BASIC5.92□□□□□ -1.46
CCDC88AQ3V6T2 TCEANC-201ENST00000380600 2988 ntAPPRIS P1 TSL 3 BASIC5.92□□□□□ -1.46
CCDC88AQ3V6T2 ABI1-210ENST00000376170 3362 ntTSL 1 (best) BASIC5.92□□□□□ -1.46
CCDC88AQ3V6T2 ZNF510-201ENST00000223428 5154 ntAPPRIS P1 TSL 1 (best) BASIC5.92□□□□□ -1.46
CCDC88AQ3V6T2 AL390036.1-202ENST00000634635 2439 ntTSL 5 BASIC5.92□□□□□ -1.46
CCDC88AQ3V6T2 NDRG3-202ENST00000359675 2917 ntAPPRIS ALT1 TSL 1 (best) BASIC5.92□□□□□ -1.46
CCDC88AQ3V6T2 AC090826.1-202ENST00000562009 3337 ntTSL 1 (best) BASIC5.92□□□□□ -1.46
CCDC88AQ3V6T2 AC020656.2-201ENST00000613291 5309 ntBASIC5.92□□□□□ -1.46
CCDC88AQ3V6T2 CLEC12A-205ENST00000434319 1515 ntTSL 1 (best) BASIC5.92□□□□□ -1.46
CCDC88AQ3V6T2 AQP4-201ENST00000383168 5274 ntAPPRIS P1 TSL 1 (best) BASIC5.92□□□□□ -1.46
CCDC88AQ3V6T2 RNA5SP509-201ENST00000364577 119 ntBASIC5.92□□□□□ -1.46
CCDC88AQ3V6T2 AC131571.1-201ENST00000429821 577 ntTSL 5 BASIC5.92□□□□□ -1.46
CCDC88AQ3V6T2 AC002465.1-201ENST00000436097 349 ntTSL 2 BASIC5.92□□□□□ -1.46
CCDC88AQ3V6T2 AP001434.1-201ENST00000444977 287 ntTSL 3 BASIC5.92□□□□□ -1.46
CCDC88AQ3V6T2 LINC02201-203ENST00000514657 674 ntTSL 3 BASIC5.92□□□□□ -1.46
CCDC88AQ3V6T2 AC022679.1-202ENST00000520251 376 ntTSL 3 BASIC5.92□□□□□ -1.46
CCDC88AQ3V6T2 MRPL49P2-201ENST00000521066 465 ntBASIC5.92□□□□□ -1.46
CCDC88AQ3V6T2 AP002444.1-201ENST00000534252 620 ntTSL 3 BASIC5.92□□□□□ -1.46
CCDC88AQ3V6T2 AC015660.3-201ENST00000559569 198 ntTSL 3 BASIC5.92□□□□□ -1.46
CCDC88AQ3V6T2 AC126323.3-201ENST00000565136 564 ntTSL 4 BASIC5.92□□□□□ -1.46
CCDC88AQ3V6T2 AP005119.2-201ENST00000579735 1105 ntBASIC5.92□□□□□ -1.46
CCDC88AQ3V6T2 BNIP3P33-201ENST00000598912 569 ntBASIC5.92□□□□□ -1.46
CCDC88AQ3V6T2 AC018695.5-201ENST00000605872 315 ntBASIC5.92□□□□□ -1.46
CCDC88AQ3V6T2 FAM27B-201ENST00000610601 213 ntBASIC5.92□□□□□ -1.46
CCDC88AQ3V6T2 PDCD6IPP1-202ENST00000622242 1064 ntBASIC5.92□□□□□ -1.46
CCDC88AQ3V6T2 FAM111B-206ENST00000620384 3405 ntAPPRIS P1 TSL 2 BASIC5.92□□□□□ -1.46
CCDC88AQ3V6T2 MS4A1-207ENST00000532073 2560 ntTSL 1 (best) BASIC5.92□□□□□ -1.46
CCDC88AQ3V6T2 POF1B-201ENST00000262753 3941 ntAPPRIS P3 TSL 1 (best) BASIC5.92□□□□□ -1.46
CCDC88AQ3V6T2 LINC01204-202ENST00000435394 2214 ntTSL 1 (best) BASIC5.92□□□□□ -1.46
CCDC88AQ3V6T2 VSNL1-203ENST00000406397 2725 ntAPPRIS P1 TSL 5 BASIC5.91□□□□□ -1.46
CCDC88AQ3V6T2 SAMD12-202ENST00000409003 8866 ntAPPRIS P1 TSL 5 BASIC5.91□□□□□ -1.46
CCDC88AQ3V6T2 CFH-201ENST00000359637 1454 ntTSL 1 (best) BASIC5.91□□□□□ -1.46
CCDC88AQ3V6T2 ZNF410-211ENST00000555044 2601 ntAPPRIS P1 TSL 1 (best) BASIC5.91□□□□□ -1.46
CCDC88AQ3V6T2 AP000641.1-201ENST00000531988 1639 ntBASIC5.91□□□□□ -1.46
CCDC88AQ3V6T2 MCMDC2-204ENST00000422365 5096 ntAPPRIS P1 TSL 2 BASIC5.91□□□□□ -1.46
CCDC88AQ3V6T2 MEF2C-202ENST00000424173 6336 ntAPPRIS P3 TSL 1 (best) BASIC5.91□□□□□ -1.46
CCDC88AQ3V6T2 SPINK5-202ENST00000359874 3656 ntAPPRIS ALT2 TSL 1 (best) BASIC5.91□□□□□ -1.46
CCDC88AQ3V6T2 CARF-208ENST00000428585 2513 ntTSL 2 BASIC5.91□□□□□ -1.46
CCDC88AQ3V6T2 GUCA1C-201ENST00000261047 982 ntAPPRIS P1 TSL 1 (best) BASIC5.91□□□□□ -1.46
CCDC88AQ3V6T2 RPL36AP36-201ENST00000418616 301 ntBASIC5.91□□□□□ -1.46
CCDC88AQ3V6T2 PPP1R11P1-201ENST00000486095 376 ntBASIC5.91□□□□□ -1.46
CCDC88AQ3V6T2 AC010255.1-201ENST00000504829 731 ntTSL 5 BASIC5.91□□□□□ -1.46
CCDC88AQ3V6T2 LINC02365-202ENST00000520280 607 ntTSL 3 BASIC5.91□□□□□ -1.46
CCDC88AQ3V6T2 AC009803.1-202ENST00000551940 544 ntTSL 4 BASIC5.91□□□□□ -1.46
CCDC88AQ3V6T2 LINC02156-201ENST00000552320 483 ntTSL 2 BASIC5.91□□□□□ -1.46
CCDC88AQ3V6T2 ARPP19-204ENST00000563277 955 ntTSL 2 BASIC5.91□□□□□ -1.46
CCDC88AQ3V6T2 AC007497.1-201ENST00000610421 561 ntBASIC5.91□□□□□ -1.46
CCDC88AQ3V6T2 NR2C2-213ENST00000617312 8113 ntTSL 1 (best) BASIC5.91□□□□□ -1.46
CCDC88AQ3V6T2 SLC4A4-202ENST00000340595 7640 ntTSL 1 (best) BASIC5.91□□□□□ -1.46
CCDC88AQ3V6T2 AC009643.2-201ENST00000603543 1448 ntBASIC5.91□□□□□ -1.46
CCDC88AQ3V6T2 RNF32-203ENST00000392741 2260 ntTSL 1 (best) BASIC5.91□□□□□ -1.46
CCDC88AQ3V6T2 FLRT3-202ENST00000378053 4776 ntAPPRIS P1 TSL 1 (best) BASIC5.91□□□□□ -1.46
CCDC88AQ3V6T2 NKIRAS1-209ENST00000614374 1612 ntAPPRIS P2 TSL 1 (best) BASIC5.91□□□□□ -1.46
CCDC88AQ3V6T2 ATF2-202ENST00000345739 4079 ntTSL 1 (best) BASIC5.91□□□□□ -1.46
CCDC88AQ3V6T2 CRB1-203ENST00000367400 4932 ntAPPRIS P1 TSL 1 (best) BASIC5.91□□□□□ -1.46
CCDC88AQ3V6T2 PLCB4-201ENST00000278655 5430 ntAPPRIS ALT1 TSL 1 (best) BASIC5.91□□□□□ -1.46
CCDC88AQ3V6T2 AL731566.1-201ENST00000620490 1937 ntBASIC5.9□□□□□ -1.46
CCDC88AQ3V6T2 RNA5SP387-201ENST00000364226 106 ntBASIC5.9□□□□□ -1.46
CCDC88AQ3V6T2 S100A9-201ENST00000368738 577 ntAPPRIS P1 TSL 1 (best) BASIC5.9□□□□□ -1.46
CCDC88AQ3V6T2 TBCAP2-201ENST00000416175 326 ntBASIC5.9□□□□□ -1.46
CCDC88AQ3V6T2 AL136368.1-201ENST00000416249 401 ntTSL 2 BASIC5.9□□□□□ -1.46
CCDC88AQ3V6T2 TEX41-203ENST00000420472 765 ntTSL 3 BASIC5.9□□□□□ -1.46
CCDC88AQ3V6T2 BMS1P19-201ENST00000433925 393 ntBASIC5.9□□□□□ -1.46
CCDC88AQ3V6T2 AF064858.2-201ENST00000440714 292 ntTSL 3 BASIC5.9□□□□□ -1.46
CCDC88AQ3V6T2 CYCSP24-201ENST00000445119 316 ntBASIC5.9□□□□□ -1.46
CCDC88AQ3V6T2 RPL7P19-201ENST00000469948 618 ntBASIC5.9□□□□□ -1.46
CCDC88AQ3V6T2 NIFKP7-201ENST00000503365 834 ntBASIC5.9□□□□□ -1.46
CCDC88AQ3V6T2 ARL6IP1P1-201ENST00000545836 610 ntBASIC5.9□□□□□ -1.46
CCDC88AQ3V6T2 APOOP5-203ENST00000565921 410 ntTSL 3 BASIC5.9□□□□□ -1.46
CCDC88AQ3V6T2 AC069061.3-201ENST00000582254 823 ntBASIC5.9□□□□□ -1.46
CCDC88AQ3V6T2 BX005214.3-202ENST00000619809 325 ntBASIC5.9□□□□□ -1.46
CCDC88AQ3V6T2 SAMMSON-210ENST00000641260 1308 ntBASIC5.9□□□□□ -1.46
CCDC88AQ3V6T2 MYO3B-202ENST00000408978 5529 ntAPPRIS P3 TSL 1 (best) BASIC5.9□□□□□ -1.46
CCDC88AQ3V6T2 AC093671.1-201ENST00000624981 2929 ntBASIC5.9□□□□□ -1.47
CCDC88AQ3V6T2 EIF4EBP2-201ENST00000373218 7257 ntAPPRIS P1 TSL 1 (best) BASIC5.9□□□□□ -1.47
CCDC88AQ3V6T2 MUM1L1-202ENST00000357175 4173 ntAPPRIS P1 TSL 2 BASIC5.9□□□□□ -1.47
CCDC88AQ3V6T2 A1CF-205ENST00000374001 9221 ntAPPRIS ALT1 TSL 5 BASIC5.9□□□□□ -1.47
CCDC88AQ3V6T2 AL136116.2-201ENST00000404020 785 ntBASIC5.9□□□□□ -1.47
CCDC88AQ3V6T2 COX5BP7-201ENST00000414780 274 ntBASIC5.9□□□□□ -1.47
CCDC88AQ3V6T2 UQCRBP1-201ENST00000421129 336 ntBASIC5.9□□□□□ -1.47
CCDC88AQ3V6T2 ATP5J2-209ENST00000488775 306 ntTSL 2 BASIC5.9□□□□□ -1.47
CCDC88AQ3V6T2 AC108751.5-201ENST00000492880 1336 ntBASIC5.9□□□□□ -1.47
CCDC88AQ3V6T2 AC007016.1-201ENST00000512110 244 ntBASIC5.9□□□□□ -1.47
CCDC88AQ3V6T2 AC009554.1-201ENST00000559251 399 ntTSL 5 BASIC5.9□□□□□ -1.47
CCDC88AQ3V6T2 AC091073.1-201ENST00000559620 666 ntTSL 3 BASIC5.9□□□□□ -1.47
CCDC88AQ3V6T2 AC034105.4-201ENST00000568304 277 ntBASIC5.9□□□□□ -1.47
CCDC88AQ3V6T2 AC006130.2-201ENST00000586202 326 ntBASIC5.9□□□□□ -1.47
CCDC88AQ3V6T2 UBE2NL-201ENST00000618570 1185 ntAPPRIS P1 BASIC5.9□□□□□ -1.47
CCDC88AQ3V6T2 C1orf140-202ENST00000439004 4340 ntTSL 1 (best) BASIC5.89□□□□□ -1.47
CCDC88AQ3V6T2 CDC5L-201ENST00000371477 6423 ntAPPRIS P1 TSL 1 (best) BASIC5.89□□□□□ -1.47
CCDC88AQ3V6T2 KIAA1328-202ENST00000586135 1863 ntTSL 1 (best) BASIC5.89□□□□□ -1.47
CCDC88AQ3V6T2 GPR85-201ENST00000297146 5079 ntAPPRIS P1 TSL 1 (best) BASIC5.89□□□□□ -1.47
Retrieved 100 of 98,524 protein–RNA pairs in 76 ms