Protein–RNA interactions for Protein: P52701

MSH6, DNA mismatch repair protein Msh6, humanhuman

Predictions only

Length 1,360 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6P52701 RN7SL802P-201ENST00000577858 299 ntBASIC6.74□□□□□ -1.33
MSH6P52701 SP2-AS1-204ENST00000585280 405 ntTSL 3 BASIC6.74□□□□□ -1.33
MSH6P52701 ARF4P1-201ENST00000605447 541 ntBASIC6.74□□□□□ -1.33
MSH6P52701 AC010424.2-201ENST00000607594 443 ntBASIC6.74□□□□□ -1.33
MSH6P52701 Metazoa_SRP.111-201ENST00000614073 259 ntBASIC6.74□□□□□ -1.33
MSH6P52701 AC114781.5-201ENST00000615297 108 ntBASIC6.74□□□□□ -1.33
MSH6P52701 OFD1P9Y-201ENST00000417699 1491 ntBASIC6.74□□□□□ -1.33
MSH6P52701 AL442639.1-201ENST00000625030 1899 ntBASIC6.74□□□□□ -1.33
MSH6P52701 RPGRIP1L-212ENST00000621565 6038 ntAPPRIS ALT1 TSL 1 (best) BASIC6.74□□□□□ -1.33
MSH6P52701 IL31RA-204ENST00000396834 2903 ntAPPRIS ALT2 TSL 1 (best) BASIC6.74□□□□□ -1.33
MSH6P52701 SLC26A7-208ENST00000523719 2902 ntAPPRIS P1 TSL 2 BASIC6.74□□□□□ -1.33
MSH6P52701 AC007382.1-201ENST00000624376 2618 ntBASIC6.74□□□□□ -1.33
MSH6P52701 KSR2-201ENST00000339824 17726 ntAPPRIS P1 TSL 5 BASIC6.74□□□□□ -1.33
MSH6P52701 PCLO-201ENST00000333891 20329 ntAPPRIS P1 TSL 2 BASIC6.74□□□□□ -1.33
MSH6P52701 STIL-204ENST00000396221 4558 ntAPPRIS ALT2 TSL 1 (best) BASIC6.74□□□□□ -1.33
MSH6P52701 PHF7-211ENST00000615126 1328 ntTSL 5 BASIC6.74□□□□□ -1.33
MSH6P52701 ATP1B4-201ENST00000218008 3868 ntAPPRIS ALT1 TSL 1 (best) BASIC6.74□□□□□ -1.33
MSH6P52701 AF127577.4-201ENST00000432230 5929 ntTSL 5 BASIC6.74□□□□□ -1.33
MSH6P52701 ELMO1-207ENST00000442504 3154 ntAPPRIS P1 TSL 2 BASIC6.74□□□□□ -1.33
MSH6P52701 PLS3-201ENST00000289290 2277 ntTSL 2 BASIC6.74□□□□□ -1.33
MSH6P52701 LCLAT1-203ENST00000379509 4888 ntAPPRIS P1 TSL 1 (best) BASIC6.73□□□□□ -1.33
MSH6P52701 HMMR-204ENST00000432118 2084 ntAPPRIS ALT2 TSL 2 BASIC6.73□□□□□ -1.33
MSH6P52701 NAV2-AS5-201ENST00000528726 3307 ntTSL 1 (best) BASIC6.73□□□□□ -1.33
MSH6P52701 OR12D3-201ENST00000396806 1869 ntAPPRIS P1 BASIC6.73□□□□□ -1.33
MSH6P52701 GABRA1-220ENST00000638159 4088 ntTSL 5 BASIC6.73□□□□□ -1.33
MSH6P52701 ALB-202ENST00000401494 1659 ntTSL 5 BASIC6.73□□□□□ -1.33
MSH6P52701 VSNL1-203ENST00000406397 2725 ntAPPRIS P1 TSL 5 BASIC6.73□□□□□ -1.33
MSH6P52701 CBX5-201ENST00000209875 11528 ntAPPRIS P1 TSL 1 (best) BASIC6.73□□□□□ -1.33
MSH6P52701 OR8A1-201ENST00000284287 1146 ntAPPRIS P1 BASIC6.73□□□□□ -1.33
MSH6P52701 ATP5F1P2-201ENST00000398143 760 ntBASIC6.73□□□□□ -1.33
MSH6P52701 CASKP1-201ENST00000412870 582 ntBASIC6.73□□□□□ -1.33
MSH6P52701 RPL34P6-201ENST00000432390 345 ntBASIC6.73□□□□□ -1.33
MSH6P52701 LINC00911-201ENST00000555272 546 ntTSL 2 BASIC6.73□□□□□ -1.33
MSH6P52701 AC009562.1-202ENST00000558755 565 ntTSL 4 BASIC6.73□□□□□ -1.33
MSH6P52701 AC105129.1-201ENST00000560250 297 ntBASIC6.73□□□□□ -1.33
MSH6P52701 ARPP19-204ENST00000563277 955 ntTSL 2 BASIC6.73□□□□□ -1.33
MSH6P52701 ALOX12P2-208ENST00000574183 519 ntTSL 3 BASIC6.73□□□□□ -1.33
MSH6P52701 AC006130.2-201ENST00000586202 326 ntBASIC6.73□□□□□ -1.33
MSH6P52701 MIR99AHG-211ENST00000602323 475 ntTSL 5 BASIC6.73□□□□□ -1.33
MSH6P52701 AL162574.1-201ENST00000615702 950 ntBASIC6.73□□□□□ -1.33
MSH6P52701 AL445567.2-201ENST00000618935 498 ntBASIC6.73□□□□□ -1.33
MSH6P52701 AHCTF1-201ENST00000326225 8633 ntAPPRIS P2 TSL 1 (best) BASIC6.73□□□□□ -1.33
MSH6P52701 FRMD7-202ENST00000370879 2864 ntTSL 1 (best) BASIC6.73□□□□□ -1.33
MSH6P52701 SLC1A3-201ENST00000265113 4170 ntAPPRIS P1 TSL 1 (best) BASIC6.73□□□□□ -1.33
MSH6P52701 TMLHE-AS1-201ENST00000433624 1702 ntTSL 1 (best) BASIC6.73□□□□□ -1.33
MSH6P52701 ESRRG-208ENST00000391890 5542 ntAPPRIS P1 TSL 5 BASIC6.73□□□□□ -1.33
MSH6P52701 OLFM3-201ENST00000338858 2189 ntAPPRIS ALT1 TSL 1 (best) BASIC6.73□□□□□ -1.33
MSH6P52701 RAB3GAP1-207ENST00000539493 3161 ntTSL 5 BASIC6.73□□□□□ -1.33
MSH6P52701 CYP1D1P-201ENST00000416662 1433 ntBASIC6.73□□□□□ -1.33
MSH6P52701 ZNF681-201ENST00000402377 6497 ntAPPRIS P1 TSL 1 (best) BASIC6.73□□□□□ -1.33
MSH6P52701 ANO3-204ENST00000531568 3117 ntAPPRIS ALT2 TSL 2 BASIC6.73□□□□□ -1.33
MSH6P52701 AC097634.1-201ENST00000604491 2467 ntBASIC6.73□□□□□ -1.33
MSH6P52701 SLC35F5-213ENST00000638402 1554 ntTSL 5 BASIC6.73□□□□□ -1.33
MSH6P52701 PSD3-201ENST00000286485 6665 ntAPPRIS P3 TSL 1 (best) BASIC6.73□□□□□ -1.33
MSH6P52701 AC099673.1-201ENST00000452199 2296 ntTSL 2 BASIC6.72□□□□□ -1.33
MSH6P52701 SNCA-AS1-201ENST00000501215 2646 ntTSL 2 BASIC6.72□□□□□ -1.33
MSH6P52701 NFKBIZ-203ENST00000394054 3787 ntAPPRIS ALT2 TSL 1 (best) BASIC6.72□□□□□ -1.33
MSH6P52701 NRXN1-242ENST00000635519 3553 ntTSL 5 BASIC6.72□□□□□ -1.33
MSH6P52701 RN7SKP280-201ENST00000364196 304 ntBASIC6.72□□□□□ -1.33
MSH6P52701 SNORA70.4-201ENST00000365509 134 ntBASIC6.72□□□□□ -1.33
MSH6P52701 RNA5SP345-201ENST00000410646 108 ntBASIC6.72□□□□□ -1.33
MSH6P52701 LINC02527-201ENST00000449069 762 ntTSL 3 BASIC6.72□□□□□ -1.33
MSH6P52701 AP001596.1-202ENST00000452460 644 ntTSL 3 BASIC6.72□□□□□ -1.33
MSH6P52701 RN7SL303P-201ENST00000469773 251 ntBASIC6.72□□□□□ -1.33
MSH6P52701 AC117383.1-201ENST00000507698 422 ntTSL 3 BASIC6.72□□□□□ -1.33
MSH6P52701 LINC02236-201ENST00000508881 552 ntTSL 4 BASIC6.72□□□□□ -1.33
MSH6P52701 CDV3-208ENST00000511392 554 ntTSL 5 BASIC6.72□□□□□ -1.33
MSH6P52701 AC139722.1-201ENST00000512502 782 ntTSL 3 BASIC6.72□□□□□ -1.33
MSH6P52701 AC002428.2-201ENST00000522973 414 ntTSL 3 BASIC6.72□□□□□ -1.33
MSH6P52701 AC053481.3-201ENST00000577881 843 ntBASIC6.72□□□□□ -1.33
MSH6P52701 AC010618.3-202ENST00000598141 476 ntTSL 3 BASIC6.72□□□□□ -1.33
MSH6P52701 AC090948.2-201ENST00000607363 564 ntBASIC6.72□□□□□ -1.33
MSH6P52701 AC090948.1-201ENST00000607464 549 ntBASIC6.72□□□□□ -1.33
MSH6P52701 AC012409.3-201ENST00000611343 981 ntBASIC6.72□□□□□ -1.33
MSH6P52701 AJ239318.1-201ENST00000624445 607 ntTSL 1 (best) BASIC6.72□□□□□ -1.33
MSH6P52701 PSMA8-205ENST00000612461 1619 ntTSL 5 BASIC6.72□□□□□ -1.33
MSH6P52701 RBMS1-202ENST00000392753 3781 ntTSL 5 BASIC6.72□□□□□ -1.33
MSH6P52701 CALN1-203ENST00000395276 9189 ntAPPRIS P3 TSL 1 (best) BASIC6.72□□□□□ -1.33
MSH6P52701 RNF32-203ENST00000392741 2260 ntTSL 1 (best) BASIC6.72□□□□□ -1.33
MSH6P52701 INSIG2-208ENST00000614681 1347 ntTSL 5 BASIC6.72□□□□□ -1.33
MSH6P52701 PCDH15-207ENST00000395430 7002 ntTSL 5 BASIC6.72□□□□□ -1.33
MSH6P52701 AC005162.3-201ENST00000609389 3695 ntTSL 5 BASIC6.72□□□□□ -1.33
MSH6P52701 ZNF266-207ENST00000592904 4401 ntAPPRIS P1 TSL 1 (best) BASIC6.72□□□□□ -1.33
MSH6P52701 POLR2B-213ENST00000639658 3300 ntTSL 5 BASIC6.72□□□□□ -1.33
MSH6P52701 CLSPN-206ENST00000520551 4010 ntTSL 1 (best) BASIC6.71□□□□□ -1.33
MSH6P52701 BCORP1-203ENST00000513194 5093 ntBASIC6.71□□□□□ -1.33
MSH6P52701 AL121657.1-201ENST00000327215 531 ntBASIC6.71□□□□□ -1.33
MSH6P52701 IGLV5-48-201ENST00000390293 369 ntAPPRIS P1 BASIC6.71□□□□□ -1.33
MSH6P52701 RPS26P8-201ENST00000393490 348 ntBASIC6.71□□□□□ -1.33
MSH6P52701 AC087276.2-201ENST00000394183 183 ntTSL 5 BASIC6.71□□□□□ -1.33
MSH6P52701 AL357515.1-201ENST00000402967 542 ntBASIC6.71□□□□□ -1.33
MSH6P52701 NPM1P18-201ENST00000434232 732 ntBASIC6.71□□□□□ -1.33
MSH6P52701 AC016772.1-201ENST00000444170 1261 ntBASIC6.71□□□□□ -1.33
MSH6P52701 AC007655.1-201ENST00000444324 357 ntTSL 3 BASIC6.71□□□□□ -1.33
MSH6P52701 AC098484.1-201ENST00000447572 484 ntTSL 3 BASIC6.71□□□□□ -1.33
MSH6P52701 NUTF2P3-201ENST00000448540 384 ntBASIC6.71□□□□□ -1.33
MSH6P52701 PCBP1-AS1-237ENST00000452431 1194 ntTSL 4 BASIC6.71□□□□□ -1.33
MSH6P52701 AC073358.1-201ENST00000505671 684 ntBASIC6.71□□□□□ -1.33
MSH6P52701 APOOP5-203ENST00000565921 410 ntTSL 3 BASIC6.71□□□□□ -1.33
MSH6P52701 AC004147.1-201ENST00000580658 299 ntTSL 3 BASIC6.71□□□□□ -1.33
Retrieved 100 of 98,524 protein–RNA pairs in 75.6 ms