Protein–RNA interactions for Protein: P18827

SDC1, Syndecan-1, humanhuman

Predictions only

Length 310 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1P18827 AC022336.1-201ENST00000475510 337 ntBASIC4.66□□□□□ -1.66
SDC1P18827 RPS18P6-201ENST00000476880 458 ntBASIC4.66□□□□□ -1.66
SDC1P18827 RN7SL97P-201ENST00000486780 299 ntBASIC4.66□□□□□ -1.66
SDC1P18827 RN7SL244P-201ENST00000493405 297 ntBASIC4.66□□□□□ -1.66
SDC1P18827 OR10J4-201ENST00000504970 935 ntAPPRIS P1 BASIC4.66□□□□□ -1.66
SDC1P18827 HIGD1AP14-201ENST00000507617 282 ntBASIC4.66□□□□□ -1.66
SDC1P18827 AC093763.1-201ENST00000512464 699 ntTSL 3 BASIC4.66□□□□□ -1.66
SDC1P18827 RPL7L1P4-201ENST00000513004 707 ntBASIC4.66□□□□□ -1.66
SDC1P18827 AP001961.1-201ENST00000515782 526 ntTSL 3 BASIC4.66□□□□□ -1.66
SDC1P18827 RNA5SP392-201ENST00000516905 112 ntBASIC4.66□□□□□ -1.66
SDC1P18827 AP001775.2-201ENST00000531710 334 ntTSL 2 BASIC4.66□□□□□ -1.66
SDC1P18827 AC004825.1-201ENST00000555068 586 ntBASIC4.66□□□□□ -1.66
SDC1P18827 AC092134.1-201ENST00000563690 800 ntTSL 3 BASIC4.66□□□□□ -1.66
SDC1P18827 AL390726.5-202ENST00000564800 256 ntBASIC4.66□□□□□ -1.66
SDC1P18827 AC004596.1-201ENST00000586560 528 ntTSL 3 BASIC4.66□□□□□ -1.66
SDC1P18827 ZNF561-AS1-207ENST00000591932 676 ntTSL 5 BASIC4.66□□□□□ -1.66
SDC1P18827 AC107419.1-202ENST00000608735 1081 ntTSL 3 BASIC4.66□□□□□ -1.66
SDC1P18827 AL122125.1-201ENST00000616999 600 ntBASIC4.66□□□□□ -1.66
SDC1P18827 AL022401.1-201ENST00000619498 108 ntBASIC4.66□□□□□ -1.66
SDC1P18827 AC022106.2-201ENST00000620114 757 ntBASIC4.66□□□□□ -1.66
SDC1P18827 ATP13A5-205ENST00000620313 709 ntTSL 5 BASIC4.66□□□□□ -1.66
SDC1P18827 AC004808.2-201ENST00000627965 773 ntBASIC4.66□□□□□ -1.66
SDC1P18827 ROS1-201ENST00000368507 7417 ntAPPRIS ALT2 TSL 5 BASIC4.66□□□□□ -1.66
SDC1P18827 CKAP5-210ENST00000529230 7121 ntAPPRIS P1 TSL 5 BASIC4.66□□□□□ -1.66
SDC1P18827 ODAM-201ENST00000396094 1319 ntAPPRIS P1 TSL 5 BASIC4.66□□□□□ -1.66
SDC1P18827 EFCAB3-201ENST00000305286 1542 ntAPPRIS P1 TSL 1 (best) BASIC4.66□□□□□ -1.66
SDC1P18827 TCHHL1-201ENST00000368806 3603 ntAPPRIS P1 TSL 1 (best) BASIC4.66□□□□□ -1.66
SDC1P18827 AP001642.1-201ENST00000624727 2117 ntBASIC4.66□□□□□ -1.66
SDC1P18827 ZNF382-204ENST00000439428 2742 ntAPPRIS ALT2 TSL 1 (best) BASIC4.66□□□□□ -1.66
SDC1P18827 CASC19-281ENST00000642118 1554 ntBASIC4.65□□□□□ -1.66
SDC1P18827 PRG4-206ENST00000635041 4915 ntAPPRIS ALT2 TSL 5 BASIC4.65□□□□□ -1.66
SDC1P18827 MTERF1-201ENST00000351870 1997 ntAPPRIS P3 TSL 1 (best) BASIC4.65□□□□□ -1.66
SDC1P18827 ASB14-202ENST00000487349 3179 ntAPPRIS P2 TSL 1 (best) BASIC4.65□□□□□ -1.66
SDC1P18827 MTUS1-201ENST00000262102 6160 ntTSL 1 (best) BASIC4.65□□□□□ -1.66
SDC1P18827 MYB-239ENST00000534121 2238 ntTSL 1 (best) BASIC4.65□□□□□ -1.66
SDC1P18827 ZNF681-201ENST00000402377 6497 ntAPPRIS P1 TSL 1 (best) BASIC4.65□□□□□ -1.66
SDC1P18827 CCT6B-203ENST00000436961 1639 ntTSL 2 BASIC4.65□□□□□ -1.66
SDC1P18827 PCAT14-202ENST00000627127 3935 ntBASIC4.65□□□□□ -1.66
SDC1P18827 CNTN1-202ENST00000348761 3328 ntTSL 1 (best) BASIC4.65□□□□□ -1.66
SDC1P18827 DCX-202ENST00000358070 9405 ntAPPRIS ALT1 TSL 1 (best) BASIC4.65□□□□□ -1.66
SDC1P18827 AC107068.1-201ENST00000563286 4218 ntBASIC4.65□□□□□ -1.66
SDC1P18827 AC083799.1-201ENST00000366451 910 ntBASIC4.65□□□□□ -1.67
SDC1P18827 MIR223-201ENST00000385204 110 ntBASIC4.65□□□□□ -1.67
SDC1P18827 RNA5SP345-201ENST00000410646 108 ntBASIC4.65□□□□□ -1.67
SDC1P18827 BMS1P13-201ENST00000417301 885 ntBASIC4.65□□□□□ -1.67
SDC1P18827 AC073521.1-201ENST00000418679 625 ntTSL 3 BASIC4.65□□□□□ -1.67
SDC1P18827 EIF4A1P1-201ENST00000420241 934 ntBASIC4.65□□□□□ -1.67
SDC1P18827 GNRH1-202ENST00000421054 470 ntAPPRIS P1 TSL 1 (best) BASIC4.65□□□□□ -1.67
SDC1P18827 NMNAT1P2-201ENST00000435192 860 ntBASIC4.65□□□□□ -1.67
SDC1P18827 AL137845.2-201ENST00000444292 988 ntBASIC4.65□□□□□ -1.67
SDC1P18827 SEPT7P3-201ENST00000455017 621 ntBASIC4.65□□□□□ -1.67
SDC1P18827 MTND6P32-201ENST00000457611 483 ntBASIC4.65□□□□□ -1.67
SDC1P18827 AC098583.1-201ENST00000480875 255 ntBASIC4.65□□□□□ -1.67
SDC1P18827 AC116562.1-201ENST00000485355 781 ntBASIC4.65□□□□□ -1.67
SDC1P18827 RN7SL30P-201ENST00000488416 306 ntBASIC4.65□□□□□ -1.67
SDC1P18827 AC119150.1-201ENST00000507143 563 ntTSL 2 BASIC4.65□□□□□ -1.67
SDC1P18827 LINC00535-203ENST00000520096 790 ntTSL 3 BASIC4.65□□□□□ -1.67
SDC1P18827 THUMPD3-AS1-215ENST00000521609 793 ntTSL 5 BASIC4.65□□□□□ -1.67
SDC1P18827 AP003400.1-201ENST00000528319 231 ntTSL 5 BASIC4.65□□□□□ -1.67
SDC1P18827 AP001804.2-201ENST00000533932 910 ntBASIC4.65□□□□□ -1.67
SDC1P18827 AC092490.3-201ENST00000545370 572 ntBASIC4.65□□□□□ -1.67
SDC1P18827 AC087477.6-201ENST00000559595 843 ntBASIC4.65□□□□□ -1.67
SDC1P18827 AC233702.9-201ENST00000581528 203 ntBASIC4.65□□□□□ -1.67
SDC1P18827 MIR3176-201ENST00000582210 90 ntBASIC4.65□□□□□ -1.67
SDC1P18827 MIR4310-201ENST00000582950 57 ntBASIC4.65□□□□□ -1.67
SDC1P18827 AC245128.3-201ENST00000594721 748 ntBASIC4.65□□□□□ -1.67
SDC1P18827 MEMO1P5-201ENST00000604810 406 ntBASIC4.65□□□□□ -1.67
SDC1P18827 MIR6768-201ENST00000610734 72 ntBASIC4.65□□□□□ -1.67
SDC1P18827 Metazoa_SRP.181-201ENST00000616636 288 ntBASIC4.65□□□□□ -1.67
SDC1P18827 AC012414.7-202ENST00000622705 1090 ntBASIC4.65□□□□□ -1.67
SDC1P18827 CU634019.2-201ENST00000625184 593 ntTSL 3 BASIC4.65□□□□□ -1.67
SDC1P18827 FTX-210ENST00000603037 8347 ntTSL 5 BASIC4.65□□□□□ -1.67
SDC1P18827 IPO11-203ENST00000409534 1725 ntTSL 2 BASIC4.65□□□□□ -1.67
SDC1P18827 OR2H1-203ENST00000377136 3024 ntAPPRIS P1 BASIC4.65□□□□□ -1.67
SDC1P18827 FMN1-202ENST00000334528 12355 ntAPPRIS P3 TSL 1 (best) BASIC4.65□□□□□ -1.67
SDC1P18827 ABCA6-206ENST00000590645 1511 ntTSL 1 (best) BASIC4.65□□□□□ -1.67
SDC1P18827 CAST-201ENST00000309190 4282 ntAPPRIS P3 TSL 1 (best) BASIC4.65□□□□□ -1.67
SDC1P18827 MTRNR2L11-201ENST00000604646 1552 ntAPPRIS P1 BASIC4.65□□□□□ -1.67
SDC1P18827 TRGC1-201ENST00000443402 2730 ntAPPRIS P1 BASIC4.65□□□□□ -1.67
SDC1P18827 AC006148.1-201ENST00000484322 4310 ntTSL 1 (best) BASIC4.65□□□□□ -1.67
SDC1P18827 PCDH9-201ENST00000377861 28227 ntTSL 1 (best) BASIC4.65□□□□□ -1.67
SDC1P18827 NKIRAS1-209ENST00000614374 1612 ntAPPRIS P2 TSL 1 (best) BASIC4.64□□□□□ -1.67
SDC1P18827 AP3B1-204ENST00000519295 3986 ntTSL 1 (best) BASIC4.64□□□□□ -1.67
SDC1P18827 IGF2BP3-218ENST00000619562 2126 ntTSL 1 (best) BASIC4.64□□□□□ -1.67
SDC1P18827 CFAP47-203ENST00000378653 9943 ntAPPRIS P2 TSL 5 BASIC4.64□□□□□ -1.67
SDC1P18827 MGC32805-205ENST00000510972 1424 ntTSL 1 (best) BASIC4.64□□□□□ -1.67
SDC1P18827 OR10AB1P-202ENST00000641219 1686 ntBASIC4.64□□□□□ -1.67
SDC1P18827 ZBTB21-201ENST00000310826 7449 ntAPPRIS P1 TSL 1 (best) BASIC4.64□□□□□ -1.67
SDC1P18827 FOXP2-220ENST00000634411 4065 ntTSL 5 BASIC4.64□□□□□ -1.67
SDC1P18827 CROT-204ENST00000442291 1993 ntTSL 5 BASIC4.64□□□□□ -1.67
SDC1P18827 CYP3A43-201ENST00000222382 1515 ntAPPRIS P4 TSL 1 (best) BASIC4.64□□□□□ -1.67
SDC1P18827 MIR365B-201ENST00000362317 111 ntBASIC4.64□□□□□ -1.67
SDC1P18827 AL353740.1-201ENST00000366253 575 ntTSL 2 BASIC4.64□□□□□ -1.67
SDC1P18827 AL592291.1-201ENST00000403830 352 ntBASIC4.64□□□□□ -1.67
SDC1P18827 RNA5SP296-201ENST00000410523 111 ntBASIC4.64□□□□□ -1.67
SDC1P18827 AP000534.2-201ENST00000412729 568 ntBASIC4.64□□□□□ -1.67
SDC1P18827 AF240627.1-201ENST00000416002 879 ntTSL 3 BASIC4.64□□□□□ -1.67
SDC1P18827 E2F6P2-201ENST00000420708 748 ntBASIC4.64□□□□□ -1.67
SDC1P18827 AC079355.1-201ENST00000421770 223 ntBASIC4.64□□□□□ -1.67
SDC1P18827 AL139240.1-201ENST00000422963 505 ntTSL 2 BASIC4.64□□□□□ -1.67
Retrieved 100 of 98,524 protein–RNA pairs in 121.1 ms