Protein–RNA interactions for Protein: P09017

HOXC4, Homeobox protein Hox-C4, humanhuman

Predicted RBP Predictions only

Length 264 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC4P09017 NSD1-202ENST00000354179 12195 ntTSL 5 BASIC4.82□□□□□ -1.64
HOXC4P09017 ABCA6-206ENST00000590645 1511 ntTSL 1 (best) BASIC4.82□□□□□ -1.64
HOXC4P09017 CD226-201ENST00000280200 12319 ntAPPRIS P2 TSL 1 (best) BASIC4.82□□□□□ -1.64
HOXC4P09017 LANCL1-204ENST00000441020 4503 ntAPPRIS P1 TSL 5 BASIC4.82□□□□□ -1.64
HOXC4P09017 UGP2-229ENST00000613823 1858 ntAPPRIS ALT1 TSL 5 BASIC4.81□□□□□ -1.64
HOXC4P09017 CLVS1-201ENST00000325897 3486 ntAPPRIS P1 TSL 1 (best) BASIC4.81□□□□□ -1.64
HOXC4P09017 ZFRP1-201ENST00000457579 2970 ntBASIC4.81□□□□□ -1.64
HOXC4P09017 STXBP4-202ENST00000398391 2160 ntTSL 1 (best) BASIC4.81□□□□□ -1.64
HOXC4P09017 ATPAF1-212ENST00000542495 1779 ntTSL 2 BASIC4.81□□□□□ -1.64
HOXC4P09017 EIF1AY-201ENST00000361365 1390 ntAPPRIS P1 TSL 1 (best) BASIC4.81□□□□□ -1.64
HOXC4P09017 BTBD10P1-201ENST00000549824 1352 ntBASIC4.81□□□□□ -1.64
HOXC4P09017 SCN1A-201ENST00000303395 8533 ntAPPRIS ALT1 TSL 5 BASIC4.81□□□□□ -1.64
HOXC4P09017 ZNF652P1-201ENST00000442420 1309 ntBASIC4.81□□□□□ -1.64
HOXC4P09017 AC025574.1-201ENST00000554784 1653 ntBASIC4.81□□□□□ -1.64
HOXC4P09017 LINC00276-202ENST00000418420 3503 ntTSL 1 (best) BASIC4.81□□□□□ -1.64
HOXC4P09017 SASS6-201ENST00000287482 3880 ntAPPRIS P1 TSL 1 (best) BASIC4.81□□□□□ -1.64
HOXC4P09017 AL357515.1-201ENST00000402967 542 ntBASIC4.81□□□□□ -1.64
HOXC4P09017 RPS4XP9-201ENST00000405151 780 ntBASIC4.81□□□□□ -1.64
HOXC4P09017 RNU2-50P-201ENST00000410494 143 ntBASIC4.81□□□□□ -1.64
HOXC4P09017 AC013472.2-201ENST00000416226 306 ntTSL 3 BASIC4.81□□□□□ -1.64
HOXC4P09017 AC006369.1-201ENST00000419425 548 ntTSL 3 BASIC4.81□□□□□ -1.64
HOXC4P09017 AL138878.2-201ENST00000440581 1241 ntBASIC4.81□□□□□ -1.64
HOXC4P09017 TCEA1P3-201ENST00000443005 880 ntBASIC4.81□□□□□ -1.64
HOXC4P09017 MRPL35P2-201ENST00000448009 511 ntBASIC4.81□□□□□ -1.64
HOXC4P09017 AC115618.2-201ENST00000453810 450 ntTSL 3 BASIC4.81□□□□□ -1.64
HOXC4P09017 AC006967.1-201ENST00000467608 589 ntBASIC4.81□□□□□ -1.64
HOXC4P09017 AL035454.1-201ENST00000470758 433 ntTSL 3 BASIC4.81□□□□□ -1.64
HOXC4P09017 COX6B1P2-201ENST00000489624 230 ntBASIC4.81□□□□□ -1.64
HOXC4P09017 NECTIN3-AS1-205ENST00000491709 792 ntTSL 3 BASIC4.81□□□□□ -1.64
HOXC4P09017 USP9YP2-201ENST00000504503 1000 ntBASIC4.81□□□□□ -1.64
HOXC4P09017 USP9YP1-201ENST00000513521 1002 ntBASIC4.81□□□□□ -1.64
HOXC4P09017 AC026688.1-201ENST00000520639 1168 ntBASIC4.81□□□□□ -1.64
HOXC4P09017 AC084880.2-201ENST00000536009 501 ntTSL 3 BASIC4.81□□□□□ -1.64
HOXC4P09017 DNAL1-205ENST00000554339 548 ntTSL 5 BASIC4.81□□□□□ -1.64
HOXC4P09017 AL121932.1-201ENST00000605542 214 ntBASIC4.81□□□□□ -1.64
HOXC4P09017 LINC02112-204ENST00000606222 429 ntTSL 5 BASIC4.81□□□□□ -1.64
HOXC4P09017 AL136295.6-201ENST00000610486 658 ntBASIC4.81□□□□□ -1.64
HOXC4P09017 AP000648.2-201ENST00000624182 404 ntBASIC4.81□□□□□ -1.64
HOXC4P09017 AC012593.1-212ENST00000627058 580 ntTSL 5 BASIC4.81□□□□□ -1.64
HOXC4P09017 AC005972.4-201ENST00000636248 1131 ntTSL 5 BASIC4.81□□□□□ -1.64
HOXC4P09017 CHM-201ENST00000357749 5442 ntAPPRIS P1 TSL 1 (best) BASIC4.81□□□□□ -1.64
HOXC4P09017 FOXP2-209ENST00000393498 2617 ntTSL 5 BASIC4.81□□□□□ -1.64
HOXC4P09017 C6-202ENST00000337836 3551 ntAPPRIS P1 TSL 1 (best) BASIC4.81□□□□□ -1.64
HOXC4P09017 AP002518.1-201ENST00000534904 3837 ntTSL 1 (best) BASIC4.81□□□□□ -1.64
HOXC4P09017 CACNB4-273ENST00000638091 4061 ntTSL 5 BASIC4.81□□□□□ -1.64
HOXC4P09017 AC093909.5-201ENST00000621839 1799 ntBASIC4.81□□□□□ -1.64
HOXC4P09017 CPSF2-201ENST00000298875 13035 ntAPPRIS P1 TSL 1 (best) BASIC4.81□□□□□ -1.64
HOXC4P09017 CHRM2-203ENST00000445907 5918 ntAPPRIS P1 TSL 1 (best) BASIC4.81□□□□□ -1.64
HOXC4P09017 AC011755.1-201ENST00000623763 2049 ntBASIC4.8□□□□□ -1.64
HOXC4P09017 AC008079.2-201ENST00000623543 20396 ntBASIC4.8□□□□□ -1.64
HOXC4P09017 AC015813.1-203ENST00000585065 4722 ntTSL 2 BASIC4.8□□□□□ -1.64
HOXC4P09017 TTC39DP-201ENST00000416781 1688 ntBASIC4.8□□□□□ -1.64
HOXC4P09017 SLC1A3-216ENST00000613445 4030 ntTSL 5 BASIC4.8□□□□□ -1.64
HOXC4P09017 PIGN-217ENST00000591238 1622 ntTSL 5 BASIC4.8□□□□□ -1.64
HOXC4P09017 XRN1-201ENST00000264951 10143 ntAPPRIS P3 TSL 1 (best) BASIC4.8□□□□□ -1.64
HOXC4P09017 MFSD4BP1-201ENST00000513330 1552 ntBASIC4.8□□□□□ -1.64
HOXC4P09017 SULF1-204ENST00000458141 5551 ntAPPRIS P1 TSL 1 (best) BASIC4.8□□□□□ -1.64
HOXC4P09017 TCF4-290ENST00000638154 7801 ntAPPRIS ALT1 TSL 5 BASIC4.8□□□□□ -1.64
HOXC4P09017 AC079741.1-201ENST00000321498 212 ntBASIC4.8□□□□□ -1.64
HOXC4P09017 HMMR-202ENST00000358715 2988 ntAPPRIS P4 TSL 1 (best) BASIC4.8□□□□□ -1.64
HOXC4P09017 RNA5SP443-201ENST00000363083 132 ntBASIC4.8□□□□□ -1.64
HOXC4P09017 MIR192-201ENST00000384915 110 ntBASIC4.8□□□□□ -1.64
HOXC4P09017 SNORA81-201ENST00000408493 178 ntBASIC4.8□□□□□ -1.64
HOXC4P09017 RN7SKP16-201ENST00000410180 299 ntBASIC4.8□□□□□ -1.64
HOXC4P09017 CTSL3P-202ENST00000412179 788 ntBASIC4.8□□□□□ -1.64
HOXC4P09017 AC023347.1-202ENST00000419223 440 ntTSL 5 BASIC4.8□□□□□ -1.64
HOXC4P09017 AC079790.1-201ENST00000420365 507 ntTSL 3 BASIC4.8□□□□□ -1.64
HOXC4P09017 AC005154.2-201ENST00000438110 379 ntBASIC4.8□□□□□ -1.64
HOXC4P09017 AC003991.1-205ENST00000447758 625 ntTSL 5 BASIC4.8□□□□□ -1.64
HOXC4P09017 AL591623.2-201ENST00000449978 222 ntBASIC4.8□□□□□ -1.64
HOXC4P09017 AC017101.1-201ENST00000453665 571 ntTSL 4 BASIC4.8□□□□□ -1.64
HOXC4P09017 AC021660.1-201ENST00000465006 554 ntBASIC4.8□□□□□ -1.64
HOXC4P09017 LINC01206-203ENST00000476815 482 ntTSL 3 BASIC4.8□□□□□ -1.64
HOXC4P09017 IGLV2-34-201ENST00000490007 283 ntBASIC4.8□□□□□ -1.64
HOXC4P09017 NIFKP7-201ENST00000503365 834 ntBASIC4.8□□□□□ -1.64
HOXC4P09017 AC097460.1-204ENST00000515026 764 ntTSL 5 BASIC4.8□□□□□ -1.64
HOXC4P09017 RN7SKP276-201ENST00000516242 268 ntBASIC4.8□□□□□ -1.64
HOXC4P09017 AC105031.1-201ENST00000518550 476 ntBASIC4.8□□□□□ -1.64
HOXC4P09017 TRAPPC2-208ENST00000519885 561 ntTSL 3 BASIC4.8□□□□□ -1.64
HOXC4P09017 AGGF1P9-201ENST00000561884 913 ntBASIC4.8□□□□□ -1.64
HOXC4P09017 AC022726.1-201ENST00000587475 207 ntBASIC4.8□□□□□ -1.64
HOXC4P09017 AL137246.1-201ENST00000607072 977 ntBASIC4.8□□□□□ -1.64
HOXC4P09017 INTS6-AS1-226ENST00000610018 672 ntTSL 5 BASIC4.8□□□□□ -1.64
HOXC4P09017 IQCM-205ENST00000636414 1844 ntAPPRIS ALT2 TSL 5 BASIC4.8□□□□□ -1.64
HOXC4P09017 CSMD1-215ENST00000537824 13512 ntAPPRIS ALT2 TSL 5 BASIC4.8□□□□□ -1.64
HOXC4P09017 AC068446.1-201ENST00000556425 1549 ntBASIC4.8□□□□□ -1.64
HOXC4P09017 MYNN-203ENST00000544106 4815 ntTSL 1 (best) BASIC4.8□□□□□ -1.64
HOXC4P09017 MFSD8-216ENST00000641147 4009 ntBASIC4.8□□□□□ -1.64
HOXC4P09017 AC083843.3-201ENST00000623679 2186 ntBASIC4.8□□□□□ -1.64
HOXC4P09017 CEP120-203ENST00000328236 4710 ntAPPRIS P1 TSL 5 BASIC4.8□□□□□ -1.64
HOXC4P09017 OR5AN1-203ENST00000641998 7647 ntAPPRIS P1 BASIC4.79□□□□□ -1.64
HOXC4P09017 NBPF14-206ENST00000614999 10080 ntTSL 5 BASIC4.79□□□□□ -1.64
HOXC4P09017 FYB1-201ENST00000351578 4750 ntAPPRIS P3 TSL 1 (best) BASIC4.79□□□□□ -1.64
HOXC4P09017 TNRC6B-201ENST00000301923 15958 ntAPPRIS P3 TSL 5 BASIC4.79□□□□□ -1.64
HOXC4P09017 AC011447.7-201ENST00000624228 1590 ntBASIC4.79□□□□□ -1.64
HOXC4P09017 TSPAN8-202ENST00000393330 1516 ntAPPRIS P1 TSL 1 (best) BASIC4.79□□□□□ -1.64
HOXC4P09017 RNA5SP191-201ENST00000362585 102 ntBASIC4.79□□□□□ -1.64
HOXC4P09017 U3.30-201ENST00000391308 210 ntBASIC4.79□□□□□ -1.64
HOXC4P09017 CYB5AP4-201ENST00000396692 399 ntBASIC4.79□□□□□ -1.64
HOXC4P09017 MIR298-201ENST00000401212 88 ntBASIC4.79□□□□□ -1.64
Retrieved 100 of 98,524 protein–RNA pairs in 119 ms