Protein–RNA interactions for Protein: Q9HCM9

TRIM39, E3 ubiquitin-protein ligase TRIM39, humanhuman

Predictions only

Length 518 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM39Q9HCM9 RPL5P24-201ENST00000463742 885 ntBASIC6.12□□□□□ -1.43
TRIM39Q9HCM9 RPL37P23-201ENST00000492641 294 ntBASIC6.12□□□□□ -1.43
TRIM39Q9HCM9 AL035404.1-201ENST00000497982 568 ntBASIC6.12□□□□□ -1.43
TRIM39Q9HCM9 AC093225.1-201ENST00000506867 1408 ntBASIC6.12□□□□□ -1.43
TRIM39Q9HCM9 AF250324.1-203ENST00000508156 517 ntTSL 3 BASIC6.12□□□□□ -1.43
TRIM39Q9HCM9 AC079395.1-201ENST00000510981 262 ntBASIC6.12□□□□□ -1.43
TRIM39Q9HCM9 VCAN-AS1-201ENST00000512090 424 ntTSL 3 BASIC6.12□□□□□ -1.43
TRIM39Q9HCM9 LINC02241-202ENST00000512688 467 ntTSL 3 BASIC6.12□□□□□ -1.43
TRIM39Q9HCM9 AC011416.1-201ENST00000514947 1732 ntBASIC6.12□□□□□ -1.43
TRIM39Q9HCM9 RNU6-759P-201ENST00000516740 103 ntBASIC6.12□□□□□ -1.43
TRIM39Q9HCM9 HMGB1P23-201ENST00000518743 568 ntBASIC6.12□□□□□ -1.43
TRIM39Q9HCM9 AC246817.1-201ENST00000520024 610 ntTSL 3 BASIC6.12□□□□□ -1.43
TRIM39Q9HCM9 AC087808.1-201ENST00000520501 361 ntBASIC6.12□□□□□ -1.43
TRIM39Q9HCM9 AC246817.2-206ENST00000520570 582 ntTSL 4 BASIC6.12□□□□□ -1.43
TRIM39Q9HCM9 CDKL3-210ENST00000523832 1501 ntAPPRIS ALT2 TSL 1 (best) BASIC6.12□□□□□ -1.43
TRIM39Q9HCM9 OR4C2P-201ENST00000530855 1064 ntBASIC6.12□□□□□ -1.43
TRIM39Q9HCM9 AC005832.3-201ENST00000537929 631 ntBASIC6.12□□□□□ -1.43
TRIM39Q9HCM9 SOX9-AS1-214ENST00000540802 578 ntTSL 4 BASIC6.12□□□□□ -1.43
TRIM39Q9HCM9 LINC01619-203ENST00000549802 2169 ntTSL 2 BASIC6.12□□□□□ -1.43
TRIM39Q9HCM9 AC089983.1-201ENST00000549807 701 ntTSL 3 BASIC6.12□□□□□ -1.43
TRIM39Q9HCM9 AL358333.2-201ENST00000556834 529 ntTSL 5 BASIC6.12□□□□□ -1.43
TRIM39Q9HCM9 NPM1P47-201ENST00000560843 856 ntBASIC6.12□□□□□ -1.43
TRIM39Q9HCM9 AC116553.2-201ENST00000564203 463 ntBASIC6.12□□□□□ -1.43
TRIM39Q9HCM9 AC138907.7-201ENST00000568972 358 ntTSL 5 BASIC6.12□□□□□ -1.43
TRIM39Q9HCM9 AC002310.3-201ENST00000569728 723 ntBASIC6.12□□□□□ -1.43
TRIM39Q9HCM9 THCAT158-201ENST00000575039 535 ntTSL 5 BASIC6.12□□□□□ -1.43
TRIM39Q9HCM9 ZNF283-203ENST00000588797 2428 ntTSL 2 BASIC6.12□□□□□ -1.43
TRIM39Q9HCM9 AL390838.2-201ENST00000602394 274 ntBASIC6.12□□□□□ -1.43
TRIM39Q9HCM9 AC007953.2-201ENST00000603299 193 ntTSL 5 BASIC6.12□□□□□ -1.43
TRIM39Q9HCM9 AC072039.2-201ENST00000608883 439 ntBASIC6.12□□□□□ -1.43
TRIM39Q9HCM9 AC055764.2-201ENST00000610089 670 ntBASIC6.12□□□□□ -1.43
TRIM39Q9HCM9 AC023158.2-201ENST00000614876 543 ntBASIC6.12□□□□□ -1.43
TRIM39Q9HCM9 Metazoa_SRP.181-201ENST00000616636 288 ntBASIC6.12□□□□□ -1.43
TRIM39Q9HCM9 AC005840.5-201ENST00000619166 599 ntBASIC6.12□□□□□ -1.43
TRIM39Q9HCM9 FAM27E2-201ENST00000619668 403 ntBASIC6.12□□□□□ -1.43
TRIM39Q9HCM9 AP001541.1-201ENST00000623322 1904 ntBASIC6.12□□□□□ -1.43
TRIM39Q9HCM9 AP002512.4-202ENST00000641599 4530 ntBASIC6.12□□□□□ -1.43
TRIM39Q9HCM9 OR51F2-202ENST00000641672 1136 ntAPPRIS P2 BASIC6.12□□□□□ -1.43
TRIM39Q9HCM9 RNF150-202ENST00000420921 3673 ntTSL 2 BASIC6.12□□□□□ -1.43
TRIM39Q9HCM9 CUZD1-205ENST00000368904 2903 ntAPPRIS P1 TSL 1 (best) BASIC6.12□□□□□ -1.43
TRIM39Q9HCM9 AC109811.1-201ENST00000512833 2807 ntTSL 1 (best) BASIC6.12□□□□□ -1.43
TRIM39Q9HCM9 ARID4A-203ENST00000395168 4051 ntTSL 5 BASIC6.11□□□□□ -1.43
TRIM39Q9HCM9 PIH1D3-203ENST00000535523 1926 ntAPPRIS P1 TSL 5 BASIC6.11□□□□□ -1.43
TRIM39Q9HCM9 RNF6P1-201ENST00000444889 1784 ntBASIC6.11□□□□□ -1.43
TRIM39Q9HCM9 CRYZ-204ENST00000370872 1592 ntTSL 1 (best) BASIC6.11□□□□□ -1.43
TRIM39Q9HCM9 MSR1-204ENST00000381998 2826 ntTSL 1 (best) BASIC6.11□□□□□ -1.43
TRIM39Q9HCM9 OSBPL9-206ENST00000453295 2842 ntTSL 1 (best) BASIC6.11□□□□□ -1.43
TRIM39Q9HCM9 ENPP2-208ENST00000522826 2667 ntAPPRIS ALT1 TSL 1 (best) BASIC6.11□□□□□ -1.43
TRIM39Q9HCM9 ENPP2-201ENST00000075322 2651 ntAPPRIS ALT1 TSL 1 (best) BASIC6.11□□□□□ -1.43
TRIM39Q9HCM9 FILIP1L-202ENST00000354552 3970 ntTSL 1 (best) BASIC6.11□□□□□ -1.43
TRIM39Q9HCM9 RASSF8-216ENST00000615708 1328 ntTSL 5 BASIC6.11□□□□□ -1.43
TRIM39Q9HCM9 BLOC1S2-205ENST00000614731 2634 ntTSL 2 BASIC6.11□□□□□ -1.43
TRIM39Q9HCM9 GALNT13-202ENST00000409237 2591 ntTSL 1 (best) BASIC6.11□□□□□ -1.43
TRIM39Q9HCM9 AC092692.1-201ENST00000623625 2595 ntBASIC6.11□□□□□ -1.43
TRIM39Q9HCM9 AC008549.2-201ENST00000333482 706 ntBASIC6.11□□□□□ -1.43
TRIM39Q9HCM9 SNORA21-201ENST00000362423 132 ntBASIC6.11□□□□□ -1.43
TRIM39Q9HCM9 RNA5SP110-201ENST00000362638 115 ntBASIC6.11□□□□□ -1.43
TRIM39Q9HCM9 Y_RNA.77-201ENST00000362962 107 ntBASIC6.11□□□□□ -1.43
TRIM39Q9HCM9 SNORA51.12-201ENST00000384448 134 ntBASIC6.11□□□□□ -1.43
TRIM39Q9HCM9 KRTAP3-1-201ENST00000391588 594 ntAPPRIS P1 BASIC6.11□□□□□ -1.43
TRIM39Q9HCM9 RPL34-203ENST00000394668 853 ntAPPRIS P1 TSL 1 (best) BASIC6.11□□□□□ -1.43
TRIM39Q9HCM9 RPS3AP26-201ENST00000398259 784 ntBASIC6.11□□□□□ -1.43
TRIM39Q9HCM9 IQCA1-AS1-201ENST00000413353 489 ntTSL 3 BASIC6.11□□□□□ -1.43
TRIM39Q9HCM9 AL512622.1-201ENST00000414106 481 ntTSL 3 BASIC6.11□□□□□ -1.43
TRIM39Q9HCM9 GSTM2-205ENST00000414179 982 ntTSL 1 (best) BASIC6.11□□□□□ -1.43
TRIM39Q9HCM9 AC007179.1-201ENST00000415159 438 ntTSL 3 BASIC6.11□□□□□ -1.43
TRIM39Q9HCM9 AC093157.1-203ENST00000416329 713 ntTSL 5 BASIC6.11□□□□□ -1.43
TRIM39Q9HCM9 AC130360.1-201ENST00000425489 1117 ntBASIC6.11□□□□□ -1.43
TRIM39Q9HCM9 LINC00266-4P-201ENST00000427373 842 ntTSL 3 BASIC6.11□□□□□ -1.43
TRIM39Q9HCM9 RPL7P4-203ENST00000430239 730 ntBASIC6.11□□□□□ -1.43
TRIM39Q9HCM9 AC007679.3-201ENST00000434035 414 ntBASIC6.11□□□□□ -1.43
TRIM39Q9HCM9 AL035701.1-202ENST00000437249 371 ntTSL 3 BASIC6.11□□□□□ -1.43
TRIM39Q9HCM9 RPS7P5-201ENST00000441482 581 ntBASIC6.11□□□□□ -1.43
TRIM39Q9HCM9 AC079117.1-201ENST00000445178 1000 ntTSL 1 (best) BASIC6.11□□□□□ -1.43
TRIM39Q9HCM9 AC006019.3-201ENST00000446335 698 ntTSL 3 BASIC6.11□□□□□ -1.43
TRIM39Q9HCM9 AC097463.1-201ENST00000447288 481 ntBASIC6.11□□□□□ -1.43
TRIM39Q9HCM9 AL731661.2-201ENST00000448824 806 ntTSL 1 (best) BASIC6.11□□□□□ -1.43
TRIM39Q9HCM9 AC002553.3-201ENST00000453002 341 ntBASIC6.11□□□□□ -1.43
TRIM39Q9HCM9 PPIAP7-201ENST00000454070 489 ntBASIC6.11□□□□□ -1.43
TRIM39Q9HCM9 AC010149.1-201ENST00000455357 571 ntTSL 4 BASIC6.11□□□□□ -1.43
TRIM39Q9HCM9 TRAPPC2-204ENST00000458511 678 ntTSL 5 BASIC6.11□□□□□ -1.43
TRIM39Q9HCM9 VPS13A-211ENST00000484581 1155 ntTSL 2 BASIC6.11□□□□□ -1.43
TRIM39Q9HCM9 AC092666.1-203ENST00000495144 698 ntTSL 5 BASIC6.11□□□□□ -1.43
TRIM39Q9HCM9 AC104090.1-201ENST00000506341 1171 ntBASIC6.11□□□□□ -1.43
TRIM39Q9HCM9 IGBP1P5-201ENST00000507524 1000 ntBASIC6.11□□□□□ -1.43
TRIM39Q9HCM9 AC093815.1-201ENST00000508637 280 ntBASIC6.11□□□□□ -1.43
TRIM39Q9HCM9 AC093879.2-201ENST00000513645 427 ntTSL 3 BASIC6.11□□□□□ -1.43
TRIM39Q9HCM9 AC092436.2-201ENST00000515188 411 ntTSL 2 BASIC6.11□□□□□ -1.43
TRIM39Q9HCM9 HNRNPKP5-201ENST00000515300 253 ntBASIC6.11□□□□□ -1.43
TRIM39Q9HCM9 AC026719.2-201ENST00000515656 295 ntTSL 3 BASIC6.11□□□□□ -1.43
TRIM39Q9HCM9 RNA5SP434-201ENST00000516647 121 ntBASIC6.11□□□□□ -1.43
TRIM39Q9HCM9 AC090572.3-201ENST00000519041 804 ntTSL 3 BASIC6.11□□□□□ -1.43
TRIM39Q9HCM9 AC090103.1-201ENST00000520386 485 ntTSL 2 BASIC6.11□□□□□ -1.43
TRIM39Q9HCM9 AC090150.1-201ENST00000521408 585 ntTSL 4 BASIC6.11□□□□□ -1.43
TRIM39Q9HCM9 VNN2-207ENST00000525289 900 ntTSL 1 (best) BASIC6.11□□□□□ -1.43
TRIM39Q9HCM9 XIRP2-AS1-201ENST00000525330 776 ntTSL 3 BASIC6.11□□□□□ -1.43
TRIM39Q9HCM9 AC130365.2-201ENST00000525882 1201 ntBASIC6.11□□□□□ -1.43
TRIM39Q9HCM9 AP000620.1-201ENST00000527147 504 ntBASIC6.11□□□□□ -1.43
TRIM39Q9HCM9 KCTD21-AS1-203ENST00000527321 586 ntTSL 3 BASIC6.11□□□□□ -1.43
TRIM39Q9HCM9 AL133481.2-201ENST00000538322 367 ntTSL 2 BASIC6.11□□□□□ -1.43
Retrieved 100 of 98,524 protein–RNA pairs in 89 ms