Protein–RNA interactions for Protein: Q96MF4

CCDC140, Coiled-coil domain-containing protein 140, humanhuman

Predictions only

Length 163 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC140Q96MF4 RPL14P5-201ENST00000436474 730 ntBASIC5.47□□□□□ -1.53
CCDC140Q96MF4 AL604028.2-201ENST00000437848 788 ntBASIC5.47□□□□□ -1.53
CCDC140Q96MF4 SNRPEP8-201ENST00000442866 260 ntBASIC5.47□□□□□ -1.53
CCDC140Q96MF4 RPS4XP4-201ENST00000443195 763 ntBASIC5.47□□□□□ -1.53
CCDC140Q96MF4 AL929410.2-201ENST00000451170 189 ntBASIC5.47□□□□□ -1.53
CCDC140Q96MF4 HMGB1P36-201ENST00000487709 576 ntBASIC5.47□□□□□ -1.53
CCDC140Q96MF4 AC069439.1-201ENST00000494739 167 ntBASIC5.47□□□□□ -1.53
CCDC140Q96MF4 AC111000.4-201ENST00000504301 569 ntTSL 5 BASIC5.47□□□□□ -1.53
CCDC140Q96MF4 LYRM7-202ENST00000507584 317 ntTSL 2 BASIC5.47□□□□□ -1.53
CCDC140Q96MF4 AC018797.3-201ENST00000513388 1241 ntBASIC5.47□□□□□ -1.53
CCDC140Q96MF4 UBE2Q2P10-201ENST00000514854 900 ntBASIC5.47□□□□□ -1.53
CCDC140Q96MF4 LACTB2-AS1-203ENST00000518553 817 ntTSL 5 BASIC5.47□□□□□ -1.53
CCDC140Q96MF4 AC024958.1-201ENST00000519364 902 ntTSL 5 BASIC5.47□□□□□ -1.53
CCDC140Q96MF4 AC011333.1-201ENST00000520587 436 ntTSL 3 BASIC5.47□□□□□ -1.53
CCDC140Q96MF4 OR5AQ1P-201ENST00000527596 927 ntBASIC5.47□□□□□ -1.53
CCDC140Q96MF4 OR4C1P-201ENST00000530880 937 ntBASIC5.47□□□□□ -1.53
CCDC140Q96MF4 AP003122.4-201ENST00000530980 758 ntBASIC5.47□□□□□ -1.53
CCDC140Q96MF4 SNHG1-212ENST00000539975 955 ntTSL 5 BASIC5.47□□□□□ -1.53
CCDC140Q96MF4 AL352984.1-201ENST00000556949 276 ntTSL 3 BASIC5.47□□□□□ -1.53
CCDC140Q96MF4 AC090181.1-201ENST00000560446 264 ntTSL 3 BASIC5.47□□□□□ -1.53
CCDC140Q96MF4 LYRM1-208ENST00000567954 460 ntAPPRIS P1 TSL 1 (best) BASIC5.47□□□□□ -1.53
CCDC140Q96MF4 AC011193.2-201ENST00000582638 367 ntBASIC5.47□□□□□ -1.53
CCDC140Q96MF4 AL354733.2-210ENST00000586211 647 ntTSL 5 BASIC5.47□□□□□ -1.53
CCDC140Q96MF4 AC011509.1-201ENST00000589512 164 ntTSL 3 BASIC5.47□□□□□ -1.53
CCDC140Q96MF4 SLC14A2-AS1-203ENST00000592286 528 ntTSL 4 BASIC5.47□□□□□ -1.53
CCDC140Q96MF4 BNIP3P33-201ENST00000598912 569 ntBASIC5.47□□□□□ -1.53
CCDC140Q96MF4 AC092032.1-201ENST00000603090 165 ntBASIC5.47□□□□□ -1.53
CCDC140Q96MF4 AC080013.4-201ENST00000607624 649 ntBASIC5.47□□□□□ -1.53
CCDC140Q96MF4 AC012510.1-201ENST00000607946 759 ntBASIC5.47□□□□□ -1.53
CCDC140Q96MF4 AC108673.3-201ENST00000609183 335 ntBASIC5.47□□□□□ -1.53
CCDC140Q96MF4 FAM13A-AS1_2.1-201ENST00000611121 108 ntBASIC5.47□□□□□ -1.53
CCDC140Q96MF4 AL391425.1-201ENST00000613658 807 ntTSL 5 BASIC5.47□□□□□ -1.53
CCDC140Q96MF4 Metazoa_SRP.66-201ENST00000615609 282 ntBASIC5.47□□□□□ -1.53
CCDC140Q96MF4 MLECP1-201ENST00000615893 709 ntBASIC5.47□□□□□ -1.53
CCDC140Q96MF4 AL359880.1-201ENST00000621879 266 ntBASIC5.47□□□□□ -1.53
CCDC140Q96MF4 AC009268.2-201ENST00000621925 457 ntBASIC5.47□□□□□ -1.53
CCDC140Q96MF4 AC022140.2-201ENST00000623500 188 ntBASIC5.47□□□□□ -1.53
CCDC140Q96MF4 PISRT1-201ENST00000626175 531 ntBASIC5.47□□□□□ -1.53
CCDC140Q96MF4 LINC00251-201ENST00000627569 1055 ntTSL 3 BASIC5.47□□□□□ -1.53
CCDC140Q96MF4 OR4K15-202ENST00000641512 1216 ntAPPRIS P1 BASIC5.47□□□□□ -1.53
CCDC140Q96MF4 AL356585.10-201ENST00000641883 123 ntBASIC5.47□□□□□ -1.53
CCDC140Q96MF4 MID1-205ENST00000380785 6092 ntAPPRIS P1 TSL 2 BASIC5.47□□□□□ -1.53
CCDC140Q96MF4 KCNIP4-201ENST00000359001 2168 ntTSL 1 (best) BASIC5.47□□□□□ -1.53
CCDC140Q96MF4 TIAL1-203ENST00000369093 5072 ntTSL 2 BASIC5.47□□□□□ -1.53
CCDC140Q96MF4 NLRP13-202ENST00000588751 3533 ntAPPRIS ALT2 TSL 5 BASIC5.47□□□□□ -1.53
CCDC140Q96MF4 DCAF10-201ENST00000242323 7393 ntTSL 1 (best) BASIC5.47□□□□□ -1.53
CCDC140Q96MF4 LINC01559-201ENST00000318426 2750 ntTSL 2 BASIC5.47□□□□□ -1.53
CCDC140Q96MF4 NIN-217ENST00000530997 8368 ntAPPRIS P5 TSL 5 BASIC5.47□□□□□ -1.53
CCDC140Q96MF4 AC008560.1-201ENST00000510585 1766 ntAPPRIS P5 TSL 2 BASIC5.47□□□□□ -1.53
CCDC140Q96MF4 SNTN-203ENST00000496807 3746 ntTSL 4 BASIC5.47□□□□□ -1.53
CCDC140Q96MF4 NCOA4-206ENST00000585056 2124 ntTSL 2 BASIC5.47□□□□□ -1.53
CCDC140Q96MF4 AC119674.1-204ENST00000641348 1343 ntBASIC5.47□□□□□ -1.53
CCDC140Q96MF4 ABCA9-201ENST00000340001 6514 ntAPPRIS P1 TSL 1 (best) BASIC5.47□□□□□ -1.53
CCDC140Q96MF4 IL5RA-201ENST00000256452 2001 ntAPPRIS P4 TSL 1 (best) BASIC5.47□□□□□ -1.53
CCDC140Q96MF4 ZNF285-204ENST00000591679 2388 ntAPPRIS ALT2 TSL 4 BASIC5.47□□□□□ -1.53
CCDC140Q96MF4 VTI1A-201ENST00000393077 4131 ntAPPRIS P1 TSL 2 BASIC5.46□□□□□ -1.53
CCDC140Q96MF4 VTCN1-203ENST00000369458 2612 ntAPPRIS P2 TSL 1 (best) BASIC5.46□□□□□ -1.53
CCDC140Q96MF4 FNDC7-201ENST00000370017 3332 ntAPPRIS P1 TSL 5 BASIC5.46□□□□□ -1.53
CCDC140Q96MF4 DNM1L-203ENST00000381000 4397 ntTSL 1 (best) BASIC5.46□□□□□ -1.53
CCDC140Q96MF4 CD163-201ENST00000359156 4268 ntAPPRIS P3 TSL 1 (best) BASIC5.46□□□□□ -1.53
CCDC140Q96MF4 NUP93-202ENST00000542526 8257 ntTSL 2 BASIC5.46□□□□□ -1.53
CCDC140Q96MF4 DCP1A-206ENST00000610213 5994 ntAPPRIS P1 TSL 1 (best) BASIC5.46□□□□□ -1.53
CCDC140Q96MF4 MUC4-209ENST00000463781 17110 ntAPPRIS ALT2 TSL 5 BASIC5.46□□□□□ -1.53
CCDC140Q96MF4 ZNF268-201ENST00000228289 3543 ntAPPRIS P1 TSL 1 (best) BASIC5.46□□□□□ -1.54
CCDC140Q96MF4 CASC19-221ENST00000641309 1382 ntBASIC5.46□□□□□ -1.54
CCDC140Q96MF4 ZNF519-207ENST00000590202 2830 ntAPPRIS P1 TSL 1 (best) BASIC5.46□□□□□ -1.54
CCDC140Q96MF4 RMST-210ENST00000640149 2844 ntTSL 5 BASIC5.46□□□□□ -1.54
CCDC140Q96MF4 DCX-203ENST00000371993 9231 ntAPPRIS ALT1 TSL 5 BASIC5.46□□□□□ -1.54
CCDC140Q96MF4 HYDIN-215ENST00000541601 3058 ntAPPRIS ALT2 TSL 2 BASIC5.46□□□□□ -1.54
CCDC140Q96MF4 FBXO7-202ENST00000397426 1888 ntTSL 2 BASIC5.46□□□□□ -1.54
CCDC140Q96MF4 CACNB4-254ENST00000637514 1880 ntTSL 5 BASIC5.46□□□□□ -1.54
CCDC140Q96MF4 FBXW7-203ENST00000296555 3572 ntTSL 1 (best) BASIC5.46□□□□□ -1.54
CCDC140Q96MF4 ATP5J2-201ENST00000292475 607 ntTSL 1 (best) BASIC5.46□□□□□ -1.54
CCDC140Q96MF4 AC023886.2-201ENST00000321285 411 ntBASIC5.46□□□□□ -1.54
CCDC140Q96MF4 TMSB4XP4-201ENST00000323496 618 ntBASIC5.46□□□□□ -1.54
CCDC140Q96MF4 RPL23AP57-201ENST00000332361 466 ntBASIC5.46□□□□□ -1.54
CCDC140Q96MF4 RNA5SP391-201ENST00000363456 119 ntBASIC5.46□□□□□ -1.54
CCDC140Q96MF4 SNORA72.1-201ENST00000363485 129 ntBASIC5.46□□□□□ -1.54
CCDC140Q96MF4 RNU6-1090P-201ENST00000364065 94 ntBASIC5.46□□□□□ -1.54
CCDC140Q96MF4 NCR2-201ENST00000373083 1154 ntAPPRIS ALT2 TSL 1 (best) BASIC5.46□□□□□ -1.54
CCDC140Q96MF4 OR10A4-201ENST00000379829 995 ntAPPRIS P1 BASIC5.46□□□□□ -1.54
CCDC140Q96MF4 Y_RNA.409-201ENST00000383990 98 ntBASIC5.46□□□□□ -1.54
CCDC140Q96MF4 SNORA51.6-201ENST00000384151 125 ntBASIC5.46□□□□□ -1.54
CCDC140Q96MF4 AP001468.1-201ENST00000415026 557 ntTSL 4 BASIC5.46□□□□□ -1.54
CCDC140Q96MF4 AC013402.2-201ENST00000424257 437 ntTSL 3 BASIC5.46□□□□□ -1.54
CCDC140Q96MF4 TRIM60P10Y-201ENST00000425589 751 ntBASIC5.46□□□□□ -1.54
CCDC140Q96MF4 PCDH9-AS1-201ENST00000430861 532 ntTSL 2 BASIC5.46□□□□□ -1.54
CCDC140Q96MF4 FTLP17-201ENST00000432567 525 ntBASIC5.46□□□□□ -1.54
CCDC140Q96MF4 AL035691.1-201ENST00000434562 595 ntTSL 3 BASIC5.46□□□□□ -1.54
CCDC140Q96MF4 TRIM60P8Y-201ENST00000436338 762 ntBASIC5.46□□□□□ -1.54
CCDC140Q96MF4 AP001048.1-201ENST00000436359 280 ntTSL 2 BASIC5.46□□□□□ -1.54
CCDC140Q96MF4 RPL17P49-201ENST00000443728 411 ntBASIC5.46□□□□□ -1.54
CCDC140Q96MF4 RPL36AP15-201ENST00000444514 266 ntBASIC5.46□□□□□ -1.54
CCDC140Q96MF4 AC002381.1-201ENST00000447049 280 ntBASIC5.46□□□□□ -1.54
CCDC140Q96MF4 AC013460.1-205ENST00000450695 518 ntTSL 4 BASIC5.46□□□□□ -1.54
CCDC140Q96MF4 AC005517.1-201ENST00000452091 489 ntBASIC5.46□□□□□ -1.54
CCDC140Q96MF4 AC013356.1-201ENST00000489027 564 ntBASIC5.46□□□□□ -1.54
CCDC140Q96MF4 AC090453.1-201ENST00000495560 436 ntBASIC5.46□□□□□ -1.54
CCDC140Q96MF4 LINC01181-201ENST00000503718 556 ntTSL 4 BASIC5.46□□□□□ -1.54
CCDC140Q96MF4 AC006390.1-201ENST00000508068 283 ntBASIC5.46□□□□□ -1.54
Retrieved 100 of 98,524 protein–RNA pairs in 73.3 ms