Protein–RNA interactions for Protein: Q96M95

CCDC42, Coiled-coil domain-containing protein 42, humanhuman

Predictions only

Length 316 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC42Q96M95 TEX41-254ENST00000626394 423 ntTSL 5 BASIC5.16□□□□□ -1.58
CCDC42Q96M95 AL138828.1-201ENST00000626414 291 ntTSL 5 BASIC5.16□□□□□ -1.58
CCDC42Q96M95 AC027279.1-201ENST00000568885 4284 ntBASIC5.16□□□□□ -1.58
CCDC42Q96M95 CSRNP3-201ENST00000314499 11788 ntAPPRIS P1 TSL 5 BASIC5.16□□□□□ -1.58
CCDC42Q96M95 IPO11-203ENST00000409534 1725 ntTSL 2 BASIC5.16□□□□□ -1.58
CCDC42Q96M95 TNFAIP8-207ENST00000513374 1385 ntTSL 2 BASIC5.16□□□□□ -1.58
CCDC42Q96M95 DAOA-211ENST00000618629 1368 ntAPPRIS P3 TSL 5 BASIC5.16□□□□□ -1.58
CCDC42Q96M95 AL121950.1-201ENST00000624993 2077 ntBASIC5.16□□□□□ -1.58
CCDC42Q96M95 FAM197Y3-202ENST00000427622 2325 ntTSL 5 BASIC5.15□□□□□ -1.58
CCDC42Q96M95 FAM197Y7-202ENST00000433321 2325 ntTSL 2 BASIC5.15□□□□□ -1.58
CCDC42Q96M95 ADGRL2-203ENST00000370713 5382 ntTSL 1 (best) BASIC5.15□□□□□ -1.58
CCDC42Q96M95 USP29-202ENST00000598197 3284 ntAPPRIS P1 BASIC5.15□□□□□ -1.58
CCDC42Q96M95 MLH3-212ENST00000556740 4491 ntAPPRIS P1 TSL 1 (best) BASIC5.15□□□□□ -1.58
CCDC42Q96M95 CHD9-221ENST00000615216 10603 ntTSL 5 BASIC5.15□□□□□ -1.58
CCDC42Q96M95 PTCD2-202ENST00000380639 11151 ntAPPRIS P1 TSL 5 BASIC5.15□□□□□ -1.58
CCDC42Q96M95 ZNF486-201ENST00000335117 3837 ntAPPRIS P1 TSL 1 (best) BASIC5.15□□□□□ -1.58
CCDC42Q96M95 CLVS1-205ENST00000519846 3622 ntAPPRIS P1 TSL 5 BASIC5.15□□□□□ -1.58
CCDC42Q96M95 SMG1P6-201ENST00000532337 2930 ntBASIC5.15□□□□□ -1.58
CCDC42Q96M95 GABRG2-214ENST00000639111 11735 ntAPPRIS P1 TSL 1 (best) BASIC5.15□□□□□ -1.58
CCDC42Q96M95 AL513548.1-201ENST00000562904 1724 ntBASIC5.15□□□□□ -1.58
CCDC42Q96M95 PPP1R2P3-201ENST00000522232 1991 ntAPPRIS P1 BASIC5.15□□□□□ -1.58
CCDC42Q96M95 POU1F1-201ENST00000344265 1149 ntTSL 5 BASIC5.15□□□□□ -1.59
CCDC42Q96M95 RNA5SP428-201ENST00000365129 132 ntBASIC5.15□□□□□ -1.59
CCDC42Q96M95 SNORA70-201ENST00000384436 135 ntBASIC5.15□□□□□ -1.59
CCDC42Q96M95 TRAV35-201ENST00000390462 330 ntBASIC5.15□□□□□ -1.59
CCDC42Q96M95 VDAC2P1-201ENST00000399358 958 ntBASIC5.15□□□□□ -1.59
CCDC42Q96M95 ARL4AP5-201ENST00000404372 599 ntBASIC5.15□□□□□ -1.59
CCDC42Q96M95 U3.36-201ENST00000408418 213 ntBASIC5.15□□□□□ -1.59
CCDC42Q96M95 AL358176.3-201ENST00000420757 454 ntBASIC5.15□□□□□ -1.59
CCDC42Q96M95 AC092159.1-201ENST00000433724 493 ntTSL 2 BASIC5.15□□□□□ -1.59
CCDC42Q96M95 AL606490.1-201ENST00000452266 765 ntBASIC5.15□□□□□ -1.59
CCDC42Q96M95 RPS6P2-201ENST00000454208 705 ntBASIC5.15□□□□□ -1.59
CCDC42Q96M95 AC026316.2-201ENST00000473110 263 ntTSL 3 BASIC5.15□□□□□ -1.59
CCDC42Q96M95 FAM107B-218ENST00000479731 570 ntAPPRIS P1 TSL 3 BASIC5.15□□□□□ -1.59
CCDC42Q96M95 AC104971.1-201ENST00000495117 578 ntBASIC5.15□□□□□ -1.59
CCDC42Q96M95 LINC02218-202ENST00000504998 582 ntTSL 4 BASIC5.15□□□□□ -1.59
CCDC42Q96M95 AC145141.1-201ENST00000510180 567 ntTSL 4 BASIC5.15□□□□□ -1.59
CCDC42Q96M95 NEDD8-203ENST00000524927 653 ntTSL 2 BASIC5.15□□□□□ -1.59
CCDC42Q96M95 LINC02156-201ENST00000552320 483 ntTSL 2 BASIC5.15□□□□□ -1.59
CCDC42Q96M95 AC093249.4-201ENST00000564755 259 ntBASIC5.15□□□□□ -1.59
CCDC42Q96M95 AC009139.2-201ENST00000569032 566 ntTSL 5 BASIC5.15□□□□□ -1.59
CCDC42Q96M95 AC011451.1-201ENST00000591336 405 ntTSL 3 BASIC5.15□□□□□ -1.59
CCDC42Q96M95 AC130352.1-201ENST00000602979 661 ntBASIC5.15□□□□□ -1.59
CCDC42Q96M95 RNU6-84P-201ENST00000607737 102 ntBASIC5.15□□□□□ -1.59
CCDC42Q96M95 AC244131.2-201ENST00000612592 512 ntTSL 3 BASIC5.15□□□□□ -1.59
CCDC42Q96M95 SATB1-AS1-263ENST00000630022 622 ntTSL 5 BASIC5.15□□□□□ -1.59
CCDC42Q96M95 DAOA-212ENST00000640578 378 ntAPPRIS ALT2 TSL 5 BASIC5.15□□□□□ -1.59
CCDC42Q96M95 SOS1-203ENST00000426016 8517 ntAPPRIS P2 TSL 2 BASIC5.15□□□□□ -1.59
CCDC42Q96M95 PDCD1LG2-201ENST00000397747 2365 ntAPPRIS P1 TSL 1 (best) BASIC5.15□□□□□ -1.59
CCDC42Q96M95 TLK1P1-201ENST00000456760 2440 ntBASIC5.15□□□□□ -1.59
CCDC42Q96M95 HMMR-202ENST00000358715 2988 ntAPPRIS P4 TSL 1 (best) BASIC5.15□□□□□ -1.59
CCDC42Q96M95 RMDN2-202ENST00000354545 1381 ntAPPRIS P1 TSL 1 (best) BASIC5.15□□□□□ -1.59
CCDC42Q96M95 PRUNE2-208ENST00000443509 12356 ntAPPRIS ALT2 TSL 5 BASIC5.15□□□□□ -1.59
CCDC42Q96M95 RNF133-201ENST00000340112 1445 ntAPPRIS P1 BASIC5.14□□□□□ -1.59
CCDC42Q96M95 OR6K3-201ENST00000368145 1844 ntAPPRIS P1 BASIC5.14□□□□□ -1.59
CCDC42Q96M95 AL136164.3-201ENST00000624429 3978 ntBASIC5.14□□□□□ -1.59
CCDC42Q96M95 ENPP3-201ENST00000357639 3162 ntAPPRIS P1 TSL 1 (best) BASIC5.14□□□□□ -1.59
CCDC42Q96M95 S100A9-201ENST00000368738 577 ntAPPRIS P1 TSL 1 (best) BASIC5.14□□□□□ -1.59
CCDC42Q96M95 MIR1286-201ENST00000408112 78 ntBASIC5.14□□□□□ -1.59
CCDC42Q96M95 LINC01359-201ENST00000415842 1157 ntTSL 2 BASIC5.14□□□□□ -1.59
CCDC42Q96M95 PPIAP13-201ENST00000434706 478 ntBASIC5.14□□□□□ -1.59
CCDC42Q96M95 PRR16-203ENST00000446965 1152 ntTSL 1 (best) BASIC5.14□□□□□ -1.59
CCDC42Q96M95 AC002553.2-201ENST00000453217 340 ntBASIC5.14□□□□□ -1.59
CCDC42Q96M95 BBIP1-208ENST00000454061 812 ntTSL 1 (best) BASIC5.14□□□□□ -1.59
CCDC42Q96M95 AC072052.1-201ENST00000496556 306 ntBASIC5.14□□□□□ -1.59
CCDC42Q96M95 ZCCHC10-203ENST00000504170 325 ntTSL 1 (best) BASIC5.14□□□□□ -1.59
CCDC42Q96M95 SPINK13-202ENST00000511106 661 ntAPPRIS ALT2 TSL 1 (best) BASIC5.14□□□□□ -1.59
CCDC42Q96M95 TCP11X3P-202ENST00000514289 1254 ntBASIC5.14□□□□□ -1.59
CCDC42Q96M95 RNA5SP392-201ENST00000516905 112 ntBASIC5.14□□□□□ -1.59
CCDC42Q96M95 GTF2H1-208ENST00000526630 932 ntTSL 2 BASIC5.14□□□□□ -1.59
CCDC42Q96M95 LINC02400-201ENST00000548210 351 ntTSL 2 BASIC5.14□□□□□ -1.59
CCDC42Q96M95 LINC02406-201ENST00000553029 546 ntTSL 3 BASIC5.14□□□□□ -1.59
CCDC42Q96M95 OR11J2P-201ENST00000555298 907 ntBASIC5.14□□□□□ -1.59
CCDC42Q96M95 AC007599.2-201ENST00000573040 493 ntTSL 5 BASIC5.14□□□□□ -1.59
CCDC42Q96M95 AC087301.1-201ENST00000579037 321 ntTSL 3 BASIC5.14□□□□□ -1.59
CCDC42Q96M95 MIR4691-201ENST00000583764 85 ntBASIC5.14□□□□□ -1.59
CCDC42Q96M95 AL035587.1-202ENST00000607218 984 ntTSL 3 BASIC5.14□□□□□ -1.59
CCDC42Q96M95 AL512356.3-201ENST00000623005 461 ntBASIC5.14□□□□□ -1.59
CCDC42Q96M95 AC005086.4-201ENST00000623065 213 ntBASIC5.14□□□□□ -1.59
CCDC42Q96M95 RUVBL2-214ENST00000640699 153 ntTSL 5 BASIC5.14□□□□□ -1.59
CCDC42Q96M95 FOXP2-217ENST00000462331 1388 ntTSL 1 (best) BASIC5.14□□□□□ -1.59
CCDC42Q96M95 ERGIC2-212ENST00000611644 4961 ntTSL 5 BASIC5.14□□□□□ -1.59
CCDC42Q96M95 CLEC12A-203ENST00000355690 1428 ntAPPRIS ALT2 TSL 1 (best) BASIC5.14□□□□□ -1.59
CCDC42Q96M95 CYP3A43-201ENST00000222382 1515 ntAPPRIS P4 TSL 1 (best) BASIC5.13□□□□□ -1.59
CCDC42Q96M95 NFIB-210ENST00000543693 7622 ntTSL 1 (best) BASIC5.13□□□□□ -1.59
CCDC42Q96M95 NFIB-211ENST00000606230 2311 ntTSL 5 BASIC5.13□□□□□ -1.59
CCDC42Q96M95 CNTN1-201ENST00000347616 5507 ntAPPRIS P1 TSL 1 (best) BASIC5.13□□□□□ -1.59
CCDC42Q96M95 DDX18P6-201ENST00000450119 1997 ntBASIC5.13□□□□□ -1.59
CCDC42Q96M95 CASC19-204ENST00000641001 2055 ntBASIC5.13□□□□□ -1.59
CCDC42Q96M95 AC092821.1-201ENST00000640129 4180 ntAPPRIS P1 TSL 5 BASIC5.13□□□□□ -1.59
CCDC42Q96M95 CLPS-201ENST00000259938 526 ntAPPRIS P1 TSL 1 (best) BASIC5.13□□□□□ -1.59
CCDC42Q96M95 MIR195-201ENST00000385194 87 ntBASIC5.13□□□□□ -1.59
CCDC42Q96M95 NT5C3A-206ENST00000409787 840 ntTSL 2 BASIC5.13□□□□□ -1.59
CCDC42Q96M95 LINC00364-201ENST00000415120 611 ntTSL 3 BASIC5.13□□□□□ -1.59
CCDC42Q96M95 AC015923.1-201ENST00000435892 305 ntTSL 2 BASIC5.13□□□□□ -1.59
CCDC42Q96M95 RHOT1P3-201ENST00000436571 331 ntBASIC5.13□□□□□ -1.59
CCDC42Q96M95 ARL4AP3-201ENST00000441452 574 ntBASIC5.13□□□□□ -1.59
CCDC42Q96M95 AC017067.1-201ENST00000448570 447 ntTSL 5 BASIC5.13□□□□□ -1.59
CCDC42Q96M95 AP000472.1-201ENST00000452500 530 ntTSL 2 BASIC5.13□□□□□ -1.59
CCDC42Q96M95 SETP20-201ENST00000457046 852 ntBASIC5.13□□□□□ -1.59
Retrieved 100 of 98,524 protein–RNA pairs in 107.8 ms