Protein–RNA interactions for Protein: P52701

MSH6, DNA mismatch repair protein Msh6, humanhuman

Predictions only

Length 1,360 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6P52701 CUL3-216ENST00000617432 1426 ntTSL 5 BASIC6.78□□□□□ -1.32
MSH6P52701 AL049536.1-201ENST00000625043 744 ntBASIC6.78□□□□□ -1.32
MSH6P52701 OR4F5-202ENST00000641515 2618 ntAPPRIS P1 BASIC6.78□□□□□ -1.32
MSH6P52701 MRPL35-202ENST00000337109 3727 ntAPPRIS P4 TSL 1 (best) BASIC6.78□□□□□ -1.32
MSH6P52701 EIF3EP2-201ENST00000423042 1814 ntBASIC6.78□□□□□ -1.32
MSH6P52701 DUSP19-202ENST00000354221 5176 ntAPPRIS P1 TSL 1 (best) BASIC6.78□□□□□ -1.32
MSH6P52701 AC239809.3-214ENST00000496508 2513 ntTSL 2 BASIC6.78□□□□□ -1.32
MSH6P52701 TRIQK-214ENST00000521988 3672 ntAPPRIS P1 TSL 1 (best) BASIC6.78□□□□□ -1.32
MSH6P52701 ZNF431-201ENST00000311048 13894 ntAPPRIS P1 TSL 1 (best) BASIC6.77□□□□□ -1.33
MSH6P52701 AKAP6-212ENST00000557272 4601 ntTSL 5 BASIC6.77□□□□□ -1.33
MSH6P52701 GHR-210ENST00000615111 4814 ntAPPRIS P1 TSL 5 BASIC6.77□□□□□ -1.33
MSH6P52701 DNHD1-201ENST00000254579 14862 ntAPPRIS P1 TSL 5 BASIC6.77□□□□□ -1.33
MSH6P52701 FOXP2-202ENST00000360232 1412 ntTSL 1 (best) BASIC6.77□□□□□ -1.33
MSH6P52701 IFIT2-203ENST00000638108 3703 ntAPPRIS P2 TSL 5 BASIC6.77□□□□□ -1.33
MSH6P52701 GRIA3-207ENST00000620443 4943 ntAPPRIS ALT1 TSL 1 (best) BASIC6.77□□□□□ -1.33
MSH6P52701 SNORA11F-201ENST00000408237 128 ntBASIC6.77□□□□□ -1.33
MSH6P52701 RPL21P108-201ENST00000413857 481 ntBASIC6.77□□□□□ -1.33
MSH6P52701 BBIP1-203ENST00000423273 492 ntTSL 1 (best) BASIC6.77□□□□□ -1.33
MSH6P52701 LINC01826-201ENST00000432894 584 ntTSL 4 BASIC6.77□□□□□ -1.33
MSH6P52701 LINC01133-202ENST00000443364 1266 ntTSL 5 BASIC6.77□□□□□ -1.33
MSH6P52701 AC090804.1-201ENST00000448870 490 ntBASIC6.77□□□□□ -1.33
MSH6P52701 RN7SL197P-201ENST00000466981 299 ntBASIC6.77□□□□□ -1.33
MSH6P52701 RPS12P31-201ENST00000491419 398 ntBASIC6.77□□□□□ -1.33
MSH6P52701 AP001781.1-201ENST00000530977 207 ntBASIC6.77□□□□□ -1.33
MSH6P52701 AC092131.1-201ENST00000564046 548 ntTSL 4 BASIC6.77□□□□□ -1.33
MSH6P52701 AC073091.2-201ENST00000603205 907 ntBASIC6.77□□□□□ -1.33
MSH6P52701 B3GALT2-201ENST00000367434 3274 ntAPPRIS P1 TSL 1 (best) BASIC6.77□□□□□ -1.33
MSH6P52701 VPS13B-203ENST00000358544 14094 ntAPPRIS P4 TSL 1 (best) BASIC6.77□□□□□ -1.33
MSH6P52701 CPNE4-214ENST00000617767 3556 ntTSL 2 BASIC6.77□□□□□ -1.33
MSH6P52701 F9-201ENST00000218099 2780 ntAPPRIS P1 TSL 1 (best) BASIC6.77□□□□□ -1.33
MSH6P52701 CASC19-201ENST00000500112 5735 ntTSL 1 (best) BASIC6.77□□□□□ -1.33
MSH6P52701 FRMD6-205ENST00000554167 4176 ntTSL 2 BASIC6.77□□□□□ -1.33
MSH6P52701 KIAA0408-204ENST00000483725 3284 ntAPPRIS P2 TSL 5 BASIC6.77□□□□□ -1.33
MSH6P52701 RSF1-204ENST00000480887 5318 ntAPPRIS ALT2 TSL 1 (best) BASIC6.77□□□□□ -1.33
MSH6P52701 ZNF493-202ENST00000355504 4386 ntTSL 1 (best) BASIC6.76□□□□□ -1.33
MSH6P52701 DTNA-230ENST00000598334 3201 ntTSL 1 (best) BASIC6.76□□□□□ -1.33
MSH6P52701 MFAP1-201ENST00000267812 2155 ntAPPRIS P1 TSL 1 (best) BASIC6.76□□□□□ -1.33
MSH6P52701 FCRL2-203ENST00000368181 1669 ntTSL 1 (best) BASIC6.76□□□□□ -1.33
MSH6P52701 AC025574.1-201ENST00000554784 1653 ntBASIC6.76□□□□□ -1.33
MSH6P52701 CD86-203ENST00000393627 1405 ntAPPRIS ALT2 TSL 1 (best) BASIC6.76□□□□□ -1.33
MSH6P52701 FOXP1-IT1-201ENST00000498714 3539 ntTSL 2 BASIC6.76□□□□□ -1.33
MSH6P52701 RAD17P1-201ENST00000418130 2042 ntBASIC6.76□□□□□ -1.33
MSH6P52701 AP001605.1-201ENST00000420186 2603 ntTSL 1 (best) BASIC6.76□□□□□ -1.33
MSH6P52701 OR14C36-201ENST00000317861 939 ntAPPRIS P1 BASIC6.76□□□□□ -1.33
MSH6P52701 CEACAMP8-201ENST00000413902 580 ntBASIC6.76□□□□□ -1.33
MSH6P52701 AC009238.2-201ENST00000431026 355 ntBASIC6.76□□□□□ -1.33
MSH6P52701 AC000111.2-201ENST00000448200 210 ntBASIC6.76□□□□□ -1.33
MSH6P52701 HMGB1P4-201ENST00000455362 567 ntBASIC6.76□□□□□ -1.33
MSH6P52701 CLEC2A-202ENST00000455827 916 ntAPPRIS P1 TSL 1 (best) BASIC6.76□□□□□ -1.33
MSH6P52701 AL512303.1-201ENST00000458693 465 ntTSL 3 BASIC6.76□□□□□ -1.33
MSH6P52701 RPL7P19-201ENST00000469948 618 ntBASIC6.76□□□□□ -1.33
MSH6P52701 LINC02502-201ENST00000505122 642 ntTSL 4 BASIC6.76□□□□□ -1.33
MSH6P52701 AL033397.2-201ENST00000508884 547 ntTSL 2 BASIC6.76□□□□□ -1.33
MSH6P52701 IMPA1P1-201ENST00000510718 842 ntBASIC6.76□□□□□ -1.33
MSH6P52701 NDUFB4P12-201ENST00000513465 390 ntBASIC6.76□□□□□ -1.33
MSH6P52701 MRPL49P2-201ENST00000521066 465 ntBASIC6.76□□□□□ -1.33
MSH6P52701 AC009803.1-202ENST00000551940 544 ntTSL 4 BASIC6.76□□□□□ -1.33
MSH6P52701 AC115286.1-201ENST00000604298 434 ntBASIC6.76□□□□□ -1.33
MSH6P52701 AC005392.3-201ENST00000607109 459 ntTSL 2 BASIC6.76□□□□□ -1.33
MSH6P52701 AC013727.1-201ENST00000618581 839 ntTSL 5 BASIC6.76□□□□□ -1.33
MSH6P52701 ZSCAN4-201ENST00000318203 2246 ntAPPRIS P1 TSL 2 BASIC6.76□□□□□ -1.33
MSH6P52701 ZNF93-201ENST00000343769 2648 ntAPPRIS P1 TSL 1 (best) BASIC6.76□□□□□ -1.33
MSH6P52701 CHST9-203ENST00000618847 11388 ntAPPRIS P1 TSL 1 (best) BASIC6.75□□□□□ -1.33
MSH6P52701 GRIK2-203ENST00000369134 4185 ntTSL 5 BASIC6.75□□□□□ -1.33
MSH6P52701 CYP3A7-CYP3A51P-202ENST00000620220 1704 ntAPPRIS P1 TSL 1 (best) BASIC6.75□□□□□ -1.33
MSH6P52701 TET1-201ENST00000373644 9288 ntAPPRIS P1 TSL 1 (best) BASIC6.75□□□□□ -1.33
MSH6P52701 CARD6-202ENST00000381677 1094 ntTSL 1 (best) BASIC6.75□□□□□ -1.33
MSH6P52701 AL390316.1-201ENST00000406279 553 ntBASIC6.75□□□□□ -1.33
MSH6P52701 DAB1-AS1-201ENST00000416598 1262 ntTSL 1 (best) BASIC6.75□□□□□ -1.33
MSH6P52701 SLC4A1APP1-201ENST00000419995 602 ntBASIC6.75□□□□□ -1.33
MSH6P52701 AP001324.1-201ENST00000428553 399 ntBASIC6.75□□□□□ -1.33
MSH6P52701 LINC00894-203ENST00000432696 298 ntTSL 1 (best) BASIC6.75□□□□□ -1.33
MSH6P52701 CR383656.1-201ENST00000484916 377 ntBASIC6.75□□□□□ -1.33
MSH6P52701 HDAC2-AS2-207ENST00000518470 563 ntTSL 4 BASIC6.75□□□□□ -1.33
MSH6P52701 AC009652.2-201ENST00000527978 516 ntTSL 5 BASIC6.75□□□□□ -1.33
MSH6P52701 AL049840.6-202ENST00000603373 279 ntBASIC6.75□□□□□ -1.33
MSH6P52701 MIR6839-201ENST00000620425 113 ntBASIC6.75□□□□□ -1.33
MSH6P52701 LINC01338-201ENST00000627179 632 ntTSL 3 BASIC6.75□□□□□ -1.33
MSH6P52701 CACNB4-273ENST00000638091 4061 ntTSL 5 BASIC6.75□□□□□ -1.33
MSH6P52701 MECOM-202ENST00000433243 3508 ntTSL 1 (best) BASIC6.75□□□□□ -1.33
MSH6P52701 LINC01847-202ENST00000523311 1762 ntTSL 5 BASIC6.75□□□□□ -1.33
MSH6P52701 ZNF559-201ENST00000317221 2732 ntTSL 2 BASIC6.75□□□□□ -1.33
MSH6P52701 EIF3M-208ENST00000531120 5051 ntAPPRIS P1 TSL 1 (best) BASIC6.75□□□□□ -1.33
MSH6P52701 PDE4B-201ENST00000329654 3998 ntTSL 1 (best) BASIC6.75□□□□□ -1.33
MSH6P52701 ENPP2-208ENST00000522826 2667 ntAPPRIS ALT1 TSL 1 (best) BASIC6.74□□□□□ -1.33
MSH6P52701 ENPP2-201ENST00000075322 2651 ntAPPRIS ALT1 TSL 1 (best) BASIC6.74□□□□□ -1.33
MSH6P52701 CEP295-206ENST00000531700 2890 ntAPPRIS ALT2 TSL 2 BASIC6.74□□□□□ -1.33
MSH6P52701 RMST-209ENST00000639542 3269 ntTSL 5 BASIC6.74□□□□□ -1.33
MSH6P52701 FBXO38-218ENST00000513826 3585 ntTSL 1 (best) BASIC6.74□□□□□ -1.33
MSH6P52701 R3HDM1-203ENST00000409606 3673 ntAPPRIS ALT1 TSL 2 BASIC6.74□□□□□ -1.33
MSH6P52701 RNU1-94P-201ENST00000362627 173 ntBASIC6.74□□□□□ -1.33
MSH6P52701 DEFB119-203ENST00000376321 457 ntAPPRIS P3 TSL 1 (best) BASIC6.74□□□□□ -1.33
MSH6P52701 RNA5SP44-201ENST00000410446 133 ntBASIC6.74□□□□□ -1.33
MSH6P52701 GPS2P1-201ENST00000411761 986 ntBASIC6.74□□□□□ -1.33
MSH6P52701 AC090617.2-201ENST00000433167 404 ntTSL 3 BASIC6.74□□□□□ -1.33
MSH6P52701 VAV3-AS1-201ENST00000438318 619 ntTSL 2 BASIC6.74□□□□□ -1.33
MSH6P52701 Z99916.1-201ENST00000454253 482 ntTSL 3 BASIC6.74□□□□□ -1.33
MSH6P52701 LINC01014-203ENST00000455307 548 ntTSL 2 BASIC6.74□□□□□ -1.33
MSH6P52701 FPGT-203ENST00000467578 601 ntTSL 2 BASIC6.74□□□□□ -1.33
MSH6P52701 RN7SL441P-201ENST00000492388 296 ntBASIC6.74□□□□□ -1.33
Retrieved 100 of 98,524 protein–RNA pairs in 88.3 ms