Protein–RNA interactions for Protein: P31274

HOXC9, Homeobox protein Hox-C9, humanhuman

Predictions only

Length 260 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC9P31274 OR52N4-202ENST00000641350 1276 ntAPPRIS P1 BASIC6.38□□□□□ -1.39
HOXC9P31274 OR52H1-202ENST00000641796 1061 ntBASIC6.38□□□□□ -1.39
HOXC9P31274 AC009643.2-201ENST00000603543 1448 ntBASIC6.38□□□□□ -1.39
HOXC9P31274 DNAAF4-CCPG1-201ENST00000565113 4589 ntTSL 2 BASIC6.38□□□□□ -1.39
HOXC9P31274 AC011447.7-201ENST00000624228 1590 ntBASIC6.38□□□□□ -1.39
HOXC9P31274 AC025574.1-201ENST00000554784 1653 ntBASIC6.38□□□□□ -1.39
HOXC9P31274 LINC01844-201ENST00000432677 2237 ntTSL 1 (best) BASIC6.38□□□□□ -1.39
HOXC9P31274 EDA2R-203ENST00000396050 3429 ntAPPRIS ALT2 TSL 5 BASIC6.38□□□□□ -1.39
HOXC9P31274 STIL-204ENST00000396221 4558 ntAPPRIS ALT2 TSL 1 (best) BASIC6.37□□□□□ -1.39
HOXC9P31274 CTSS-201ENST00000368985 4107 ntAPPRIS P1 TSL 1 (best) BASIC6.37□□□□□ -1.39
HOXC9P31274 MTCO1P15-201ENST00000529569 1526 ntBASIC6.37□□□□□ -1.39
HOXC9P31274 RNU4-25P-201ENST00000410569 230 ntBASIC6.37□□□□□ -1.39
HOXC9P31274 AC140479.3-201ENST00000418944 1126 ntBASIC6.37□□□□□ -1.39
HOXC9P31274 DPYD-AS1-201ENST00000422980 533 ntTSL 3 BASIC6.37□□□□□ -1.39
HOXC9P31274 AC108463.1-201ENST00000450258 347 ntBASIC6.37□□□□□ -1.39
HOXC9P31274 RBBP6-204ENST00000452655 854 ntTSL 1 (best) BASIC6.37□□□□□ -1.39
HOXC9P31274 AC079168.2-201ENST00000453977 416 ntBASIC6.37□□□□□ -1.39
HOXC9P31274 STRADBP1-201ENST00000478954 1281 ntBASIC6.37□□□□□ -1.39
HOXC9P31274 AC068587.1-201ENST00000483613 781 ntBASIC6.37□□□□□ -1.39
HOXC9P31274 LINC02438-201ENST00000505347 641 ntTSL 3 BASIC6.37□□□□□ -1.39
HOXC9P31274 Y_RNA.719-201ENST00000517156 106 ntBASIC6.37□□□□□ -1.39
HOXC9P31274 RNU6-709P-201ENST00000517257 104 ntBASIC6.37□□□□□ -1.39
HOXC9P31274 MTND2P7-201ENST00000521337 640 ntBASIC6.37□□□□□ -1.39
HOXC9P31274 AP001528.2-201ENST00000528660 1156 ntTSL 5 BASIC6.37□□□□□ -1.39
HOXC9P31274 PARP1P2-201ENST00000556806 195 ntBASIC6.37□□□□□ -1.39
HOXC9P31274 RN7SL652P-201ENST00000577769 300 ntBASIC6.37□□□□□ -1.39
HOXC9P31274 AC009704.2-201ENST00000618739 483 ntBASIC6.37□□□□□ -1.39
HOXC9P31274 CASP10-202ENST00000286186 5928 ntAPPRIS P4 TSL 1 (best) BASIC6.37□□□□□ -1.39
HOXC9P31274 DTNA-230ENST00000598334 3201 ntTSL 1 (best) BASIC6.37□□□□□ -1.39
HOXC9P31274 ALG10B-201ENST00000308742 10253 ntAPPRIS P1 TSL 1 (best) BASIC6.37□□□□□ -1.39
HOXC9P31274 CXCL9-201ENST00000264888 2740 ntAPPRIS P1 TSL 1 (best) BASIC6.37□□□□□ -1.39
HOXC9P31274 RNMT-202ENST00000383314 6250 ntAPPRIS P1 TSL 1 (best) BASIC6.37□□□□□ -1.39
HOXC9P31274 OR56B2P-202ENST00000641377 2453 ntBASIC6.37□□□□□ -1.39
HOXC9P31274 MKI67-201ENST00000368653 11417 ntAPPRIS ALT2 TSL 2 BASIC6.37□□□□□ -1.39
HOXC9P31274 FAM35A-202ENST00000298786 3614 ntTSL 5 BASIC6.37□□□□□ -1.39
HOXC9P31274 MECOM-203ENST00000460814 3374 ntTSL 1 (best) BASIC6.37□□□□□ -1.39
HOXC9P31274 LINC01902-203ENST00000637369 7356 ntTSL 5 BASIC6.37□□□□□ -1.39
HOXC9P31274 RFTN2-201ENST00000295049 5827 ntAPPRIS P1 TSL 1 (best) BASIC6.37□□□□□ -1.39
HOXC9P31274 C17orf78-204ENST00000615133 1862 ntAPPRIS P3 TSL 1 (best) BASIC6.36□□□□□ -1.39
HOXC9P31274 AC002525.1-201ENST00000624392 1622 ntBASIC6.36□□□□□ -1.39
HOXC9P31274 DSC3-201ENST00000360428 6939 ntAPPRIS P1 TSL 1 (best) BASIC6.36□□□□□ -1.39
HOXC9P31274 AIMP1-202ENST00000394701 2586 ntAPPRIS ALT2 TSL 1 (best) BASIC6.36□□□□□ -1.39
HOXC9P31274 IL7R-201ENST00000303115 4626 ntAPPRIS P1 TSL 1 (best) BASIC6.36□□□□□ -1.39
HOXC9P31274 ZBTB38-201ENST00000321464 3588 ntAPPRIS P1 BASIC6.36□□□□□ -1.39
HOXC9P31274 SLC26A5-208ENST00000393730 2498 ntTSL 1 (best) BASIC6.36□□□□□ -1.39
HOXC9P31274 OR5T1-202ENST00000641665 1471 ntAPPRIS P1 BASIC6.36□□□□□ -1.39
HOXC9P31274 CENPI-201ENST00000372926 2375 ntAPPRIS ALT2 TSL 5 BASIC6.36□□□□□ -1.39
HOXC9P31274 ARPP21-202ENST00000396481 1304 ntTSL 1 (best) BASIC6.36□□□□□ -1.39
HOXC9P31274 BDH2-201ENST00000296424 1126 ntAPPRIS P1 TSL 1 (best) BASIC6.36□□□□□ -1.39
HOXC9P31274 ATXN10-203ENST00000402380 564 ntTSL 4 BASIC6.36□□□□□ -1.39
HOXC9P31274 AL049693.1-201ENST00000402760 611 ntBASIC6.36□□□□□ -1.39
HOXC9P31274 MRPS21P2-201ENST00000424704 264 ntBASIC6.36□□□□□ -1.39
HOXC9P31274 RPL12P28-201ENST00000430852 489 ntBASIC6.36□□□□□ -1.39
HOXC9P31274 ARHGAP26-IT1-201ENST00000433186 388 ntTSL 3 BASIC6.36□□□□□ -1.39
HOXC9P31274 ARL4AP4-201ENST00000434170 518 ntBASIC6.36□□□□□ -1.39
HOXC9P31274 C4orf45-201ENST00000434826 1215 ntAPPRIS P1 TSL 2 BASIC6.36□□□□□ -1.39
HOXC9P31274 AC006037.1-201ENST00000437967 287 ntTSL 5 BASIC6.36□□□□□ -1.39
HOXC9P31274 RSL24D1P2-201ENST00000445584 366 ntBASIC6.36□□□□□ -1.39
HOXC9P31274 AC000061.1-201ENST00000456270 376 ntTSL 3 BASIC6.36□□□□□ -1.39
HOXC9P31274 PDCD10-207ENST00000471885 764 ntTSL 5 BASIC6.36□□□□□ -1.39
HOXC9P31274 RPL7AP10-201ENST00000481016 791 ntBASIC6.36□□□□□ -1.39
HOXC9P31274 NIP7P2-201ENST00000485801 544 ntBASIC6.36□□□□□ -1.39
HOXC9P31274 OR52A4P-203ENST00000498233 1014 ntBASIC6.36□□□□□ -1.39
HOXC9P31274 AC010387.1-201ENST00000507526 487 ntTSL 2 BASIC6.36□□□□□ -1.39
HOXC9P31274 IGKV2D-10-201ENST00000520194 281 ntBASIC6.36□□□□□ -1.39
HOXC9P31274 AC079015.1-201ENST00000521793 596 ntTSL 2 BASIC6.36□□□□□ -1.39
HOXC9P31274 CASC19-203ENST00000523510 575 ntTSL 3 BASIC6.36□□□□□ -1.39
HOXC9P31274 LINC02444-201ENST00000550723 1256 ntTSL 1 (best) BASIC6.36□□□□□ -1.39
HOXC9P31274 EIF1AXP2-201ENST00000555940 413 ntBASIC6.36□□□□□ -1.39
HOXC9P31274 MIR4420-201ENST00000583944 77 ntBASIC6.36□□□□□ -1.39
HOXC9P31274 AC100847.1-201ENST00000611316 481 ntBASIC6.36□□□□□ -1.39
HOXC9P31274 PLSCR2-207ENST00000613069 1208 ntTSL 1 (best) BASIC6.36□□□□□ -1.39
HOXC9P31274 AC107905.1-201ENST00000616204 426 ntBASIC6.36□□□□□ -1.39
HOXC9P31274 AC068831.8-201ENST00000620171 435 ntBASIC6.36□□□□□ -1.39
HOXC9P31274 NPIPB9-201ENST00000357796 2037 ntAPPRIS ALT2 TSL 1 (best) BASIC6.36□□□□□ -1.39
HOXC9P31274 SLC1A3-201ENST00000265113 4170 ntAPPRIS P1 TSL 1 (best) BASIC6.36□□□□□ -1.39
HOXC9P31274 AFF2-201ENST00000286437 12280 ntTSL 2 BASIC6.36□□□□□ -1.39
HOXC9P31274 ATPAF1-212ENST00000542495 1779 ntTSL 2 BASIC6.36□□□□□ -1.39
HOXC9P31274 ARIH1-201ENST00000379887 21681 ntAPPRIS P1 TSL 1 (best) BASIC6.36□□□□□ -1.39
HOXC9P31274 SOCS5P3-201ENST00000425115 1576 ntBASIC6.35□□□□□ -1.39
HOXC9P31274 SLC26A7-210ENST00000617233 5257 ntAPPRIS P1 TSL 5 BASIC6.35□□□□□ -1.39
HOXC9P31274 AC106799.3-201ENST00000562127 3300 ntTSL 2 BASIC6.35□□□□□ -1.39
HOXC9P31274 AC103740.1-201ENST00000558888 7427 ntTSL 2 BASIC6.35□□□□□ -1.39
HOXC9P31274 TLK1-212ENST00000521943 2605 ntTSL 2 BASIC6.35□□□□□ -1.39
HOXC9P31274 CAST-201ENST00000309190 4282 ntAPPRIS P3 TSL 1 (best) BASIC6.35□□□□□ -1.39
HOXC9P31274 DYRK1A-202ENST00000339659 8654 ntTSL 1 (best) BASIC6.35□□□□□ -1.39
HOXC9P31274 ZNF891-201ENST00000537226 15455 ntAPPRIS P1 TSL 2 BASIC6.35□□□□□ -1.39
HOXC9P31274 MAPK10-208ENST00000395169 4049 ntTSL 1 (best) BASIC6.35□□□□□ -1.39
HOXC9P31274 OR12D3-201ENST00000396806 1869 ntAPPRIS P1 BASIC6.35□□□□□ -1.39
HOXC9P31274 FAT4-202ENST00000394329 16123 ntAPPRIS P1 TSL 5 BASIC6.35□□□□□ -1.39
HOXC9P31274 DICER1-202ENST00000393063 10220 ntAPPRIS P1 TSL 1 (best) BASIC6.35□□□□□ -1.39
HOXC9P31274 CHRM2-203ENST00000445907 5918 ntAPPRIS P1 TSL 1 (best) BASIC6.35□□□□□ -1.39
HOXC9P31274 AL591848.1-201ENST00000413092 322 ntBASIC6.35□□□□□ -1.39
HOXC9P31274 UQCRBP1-201ENST00000421129 336 ntBASIC6.35□□□□□ -1.39
HOXC9P31274 OR5M12P-201ENST00000423388 929 ntBASIC6.35□□□□□ -1.39
HOXC9P31274 RPL12P34-201ENST00000424532 479 ntBASIC6.35□□□□□ -1.39
HOXC9P31274 AC234779.1-201ENST00000425910 285 ntBASIC6.35□□□□□ -1.39
HOXC9P31274 MTND2P28-201ENST00000457540 1044 ntBASIC6.35□□□□□ -1.39
HOXC9P31274 SUMO2P19-201ENST00000518920 295 ntBASIC6.35□□□□□ -1.39
HOXC9P31274 AC025857.1-201ENST00000525252 377 ntBASIC6.35□□□□□ -1.39
Retrieved 100 of 98,524 protein–RNA pairs in 96.4 ms