Protein–RNA interactions for Protein: O75351

VPS4B, Vacuolar protein sorting-associated protein 4B, humanhuman

Predictions only

Length 444 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4BO75351 BRIP1-202ENST00000577598 3969 ntAPPRIS ALT2 TSL 5 BASIC5.68□□□□□ -1.5
VPS4BO75351 MAP2-205ENST00000392194 5303 ntTSL 1 (best) BASIC5.68□□□□□ -1.5
VPS4BO75351 KTN1-223ENST00000555573 1712 ntTSL 2 BASIC5.68□□□□□ -1.5
VPS4BO75351 CPS1-IT1-201ENST00000628368 2306 ntBASIC5.68□□□□□ -1.5
VPS4BO75351 SEPT7-203ENST00000399035 4066 ntAPPRIS ALT1 TSL 5 BASIC5.68□□□□□ -1.5
VPS4BO75351 AC007750.1-202ENST00000418968 4098 ntTSL 5 BASIC5.68□□□□□ -1.5
VPS4BO75351 PROX1-205ENST00000498508 8498 ntAPPRIS P1 TSL 1 (best) BASIC5.67□□□□□ -1.5
VPS4BO75351 PTPRD-202ENST00000356435 9472 ntAPPRIS P1 TSL 5 BASIC5.67□□□□□ -1.5
VPS4BO75351 DCDC1-203ENST00000406071 4758 ntAPPRIS P2 TSL 5 BASIC5.67□□□□□ -1.5
VPS4BO75351 SOX5-216ENST00000546136 6975 ntAPPRIS P3 TSL 5 BASIC5.67□□□□□ -1.5
VPS4BO75351 TDRD5-202ENST00000367614 3632 ntAPPRIS P3 TSL 2 BASIC5.67□□□□□ -1.5
VPS4BO75351 AC106872.5-201ENST00000508856 1416 ntBASIC5.67□□□□□ -1.5
VPS4BO75351 CCR2-201ENST00000292301 2671 ntTSL 5 BASIC5.67□□□□□ -1.5
VPS4BO75351 C17orf78-203ENST00000611038 1675 ntAPPRIS ALT2 TSL 2 BASIC5.67□□□□□ -1.5
VPS4BO75351 CAPN6-201ENST00000324068 3568 ntAPPRIS P1 TSL 1 (best) BASIC5.67□□□□□ -1.5
VPS4BO75351 CFH-201ENST00000359637 1454 ntTSL 1 (best) BASIC5.67□□□□□ -1.5
VPS4BO75351 NELL2-205ENST00000452445 3196 ntAPPRIS P1 TSL 1 (best) BASIC5.67□□□□□ -1.5
VPS4BO75351 PSG11-201ENST00000306322 990 ntTSL 1 (best) BASIC5.67□□□□□ -1.5
VPS4BO75351 OR9A2-201ENST00000350513 1038 ntAPPRIS P1 BASIC5.67□□□□□ -1.5
VPS4BO75351 FAS-203ENST00000355279 983 ntTSL 1 (best) BASIC5.67□□□□□ -1.5
VPS4BO75351 G6PC2-202ENST00000375363 1214 ntAPPRIS P1 TSL 1 (best) BASIC5.67□□□□□ -1.5
VPS4BO75351 AC233289.1-201ENST00000403700 508 ntBASIC5.67□□□□□ -1.5
VPS4BO75351 RPS3AP2-201ENST00000407190 754 ntBASIC5.67□□□□□ -1.5
VPS4BO75351 SNRPEP6-201ENST00000407465 277 ntBASIC5.67□□□□□ -1.5
VPS4BO75351 MIR3681HG-202ENST00000412606 578 ntTSL 5 BASIC5.67□□□□□ -1.5
VPS4BO75351 AC073257.2-201ENST00000413991 528 ntTSL 3 BASIC5.67□□□□□ -1.5
VPS4BO75351 RPS7P9-201ENST00000414704 586 ntBASIC5.67□□□□□ -1.5
VPS4BO75351 LINC01347-201ENST00000417964 355 ntBASIC5.67□□□□□ -1.5
VPS4BO75351 RPS4XP5-201ENST00000419038 768 ntBASIC5.67□□□□□ -1.5
VPS4BO75351 RPS3AP37-201ENST00000419176 745 ntBASIC5.67□□□□□ -1.5
VPS4BO75351 AC008568.1-203ENST00000433406 765 ntTSL 3 BASIC5.67□□□□□ -1.5
VPS4BO75351 AL121759.1-201ENST00000434043 795 ntTSL 5 BASIC5.67□□□□□ -1.5
VPS4BO75351 AL445928.1-201ENST00000435545 222 ntBASIC5.67□□□□□ -1.5
VPS4BO75351 FSIP2-AS1-202ENST00000436557 689 ntTSL 3 BASIC5.67□□□□□ -1.5
VPS4BO75351 AL590867.3-201ENST00000436953 438 ntTSL 3 BASIC5.67□□□□□ -1.5
VPS4BO75351 MRPL35P2-201ENST00000448009 511 ntBASIC5.67□□□□□ -1.5
VPS4BO75351 AC005077.1-201ENST00000449226 375 ntBASIC5.67□□□□□ -1.5
VPS4BO75351 AC112492.1-201ENST00000449607 712 ntBASIC5.67□□□□□ -1.5
VPS4BO75351 TPTE2P6-203ENST00000450973 649 ntTSL 5 BASIC5.67□□□□□ -1.5
VPS4BO75351 MEMO1P4-201ENST00000453590 386 ntBASIC5.67□□□□□ -1.5
VPS4BO75351 AL021940.1-201ENST00000454271 677 ntTSL 2 BASIC5.67□□□□□ -1.5
VPS4BO75351 HSPE1P22-201ENST00000456856 327 ntBASIC5.67□□□□□ -1.5
VPS4BO75351 CDKN3-205ENST00000458126 845 ntAPPRIS ALT2 TSL 5 BASIC5.67□□□□□ -1.5
VPS4BO75351 OARD1-207ENST00000468811 819 ntAPPRIS P1 TSL 2 BASIC5.67□□□□□ -1.5
VPS4BO75351 AC092865.4-201ENST00000477936 615 ntBASIC5.67□□□□□ -1.5
VPS4BO75351 EIF3LP3-201ENST00000495197 822 ntBASIC5.67□□□□□ -1.5
VPS4BO75351 AC008629.2-201ENST00000503783 483 ntBASIC5.67□□□□□ -1.5
VPS4BO75351 AC012629.1-201ENST00000503953 342 ntTSL 3 BASIC5.67□□□□□ -1.5
VPS4BO75351 AC098829.1-202ENST00000513384 537 ntTSL 3 BASIC5.67□□□□□ -1.5
VPS4BO75351 LINC00861-202ENST00000517869 606 ntTSL 5 BASIC5.67□□□□□ -1.5
VPS4BO75351 AC008601.1-201ENST00000519892 527 ntTSL 4 BASIC5.67□□□□□ -1.5
VPS4BO75351 AC013644.1-202ENST00000523166 499 ntTSL 2 BASIC5.67□□□□□ -1.5
VPS4BO75351 AC104417.1-201ENST00000523974 751 ntBASIC5.67□□□□□ -1.5
VPS4BO75351 GCSAML-207ENST00000527541 1094 ntAPPRIS ALT2 TSL 1 (best) BASIC5.67□□□□□ -1.5
VPS4BO75351 OSBPL9P5-201ENST00000542581 171 ntBASIC5.67□□□□□ -1.5
VPS4BO75351 AC012464.2-201ENST00000551257 779 ntTSL 5 BASIC5.67□□□□□ -1.5
VPS4BO75351 AC087286.2-201ENST00000558980 660 ntTSL 3 BASIC5.67□□□□□ -1.5
VPS4BO75351 AC009094.1-201ENST00000564443 426 ntBASIC5.67□□□□□ -1.5
VPS4BO75351 AC106796.1-201ENST00000577173 615 ntTSL 3 BASIC5.67□□□□□ -1.5
VPS4BO75351 VN1R78P-201ENST00000597393 564 ntBASIC5.67□□□□□ -1.5
VPS4BO75351 AC068768.2-201ENST00000602352 343 ntBASIC5.67□□□□□ -1.5
VPS4BO75351 AC018618.2-201ENST00000604770 446 ntBASIC5.67□□□□□ -1.5
VPS4BO75351 AC145423.1-201ENST00000605712 336 ntBASIC5.67□□□□□ -1.5
VPS4BO75351 AC012557.1-201ENST00000607115 611 ntBASIC5.67□□□□□ -1.5
VPS4BO75351 AL008635.1-201ENST00000609073 385 ntTSL 3 BASIC5.67□□□□□ -1.5
VPS4BO75351 AC010975.3-201ENST00000618727 978 ntBASIC5.67□□□□□ -1.5
VPS4BO75351 ATRX-202ENST00000395603 10218 ntAPPRIS ALT2 TSL 1 (best) BASIC5.67□□□□□ -1.5
VPS4BO75351 SCN2A-203ENST00000375437 8792 ntAPPRIS ALT1 TSL 5 BASIC5.67□□□□□ -1.5
VPS4BO75351 NCOA3-203ENST00000372004 7939 ntAPPRIS ALT2 TSL 1 (best) BASIC5.67□□□□□ -1.5
VPS4BO75351 PDE4D-202ENST00000317118 2599 ntTSL 1 (best) BASIC5.67□□□□□ -1.5
VPS4BO75351 PSG9-202ENST00000270077 1705 ntAPPRIS P2 TSL 1 (best) BASIC5.67□□□□□ -1.5
VPS4BO75351 AC008627.1-201ENST00000517511 1704 ntBASIC5.67□□□□□ -1.5
VPS4BO75351 NR2C2-213ENST00000617312 8113 ntTSL 1 (best) BASIC5.67□□□□□ -1.5
VPS4BO75351 LINC02070-201ENST00000460586 1321 ntTSL 1 (best) BASIC5.67□□□□□ -1.5
VPS4BO75351 PHF7-211ENST00000615126 1328 ntTSL 5 BASIC5.67□□□□□ -1.5
VPS4BO75351 SLC12A1-201ENST00000330289 1764 ntTSL 1 (best) BASIC5.67□□□□□ -1.5
VPS4BO75351 ADGRL2-222ENST00000627151 5789 ntTSL 5 BASIC5.67□□□□□ -1.5
VPS4BO75351 TRPC4-201ENST00000338947 2912 ntTSL 5 BASIC5.67□□□□□ -1.5
VPS4BO75351 PHC3-217ENST00000497658 2087 ntTSL 1 (best) BASIC5.67□□□□□ -1.5
VPS4BO75351 BCL2L14-213ENST00000589718 1850 ntAPPRIS P1 TSL 5 BASIC5.66□□□□□ -1.5
VPS4BO75351 CEACAM1-201ENST00000161559 3519 ntAPPRIS P3 TSL 1 (best) BASIC5.66□□□□□ -1.5
VPS4BO75351 TRIQK-223ENST00000537541 3510 ntAPPRIS P1 TSL 3 BASIC5.66□□□□□ -1.5
VPS4BO75351 KBTBD3-201ENST00000526793 3751 ntAPPRIS P1 TSL 1 (best) BASIC5.66□□□□□ -1.5
VPS4BO75351 AC012254.3-201ENST00000591183 2117 ntBASIC5.66□□□□□ -1.5
VPS4BO75351 AL133268.1-201ENST00000405676 1401 ntBASIC5.66□□□□□ -1.5
VPS4BO75351 MTCO1P18-201ENST00000455518 1419 ntBASIC5.66□□□□□ -1.5
VPS4BO75351 MGC32805-205ENST00000510972 1424 ntTSL 1 (best) BASIC5.66□□□□□ -1.5
VPS4BO75351 MEIOB-201ENST00000325962 1694 ntAPPRIS P1 TSL 5 BASIC5.66□□□□□ -1.5
VPS4BO75351 AL022311.1-201ENST00000623726 19416 ntBASIC5.66□□□□□ -1.5
VPS4BO75351 SERPINB7-207ENST00000546027 1951 ntAPPRIS P1 TSL 2 BASIC5.66□□□□□ -1.5
VPS4BO75351 HMMR-202ENST00000358715 2988 ntAPPRIS P4 TSL 1 (best) BASIC5.66□□□□□ -1.5
VPS4BO75351 RPL39P5-201ENST00000273411 449 ntTSL 1 (best) BASIC5.66□□□□□ -1.5
VPS4BO75351 HOMER1-201ENST00000282260 774 ntTSL 1 (best) BASIC5.66□□□□□ -1.5
VPS4BO75351 ANKRD36P1-201ENST00000344424 659 ntBASIC5.66□□□□□ -1.5
VPS4BO75351 RN7SKP185-201ENST00000362813 326 ntBASIC5.66□□□□□ -1.5
VPS4BO75351 DAOA-202ENST00000375936 742 ntAPPRIS P3 TSL 1 (best) BASIC5.66□□□□□ -1.5
VPS4BO75351 S100G-201ENST00000380200 455 ntAPPRIS P1 TSL 1 (best) BASIC5.66□□□□□ -1.5
VPS4BO75351 RNU1-136P-201ENST00000384181 164 ntBASIC5.66□□□□□ -1.5
VPS4BO75351 RNA5SP91-201ENST00000390902 119 ntBASIC5.66□□□□□ -1.5
VPS4BO75351 MTCO1P56-201ENST00000401674 224 ntBASIC5.66□□□□□ -1.5
Retrieved 100 of 98,524 protein–RNA pairs in 124.7 ms