Protein–RNA interactions for Protein: Q96M95

CCDC42, Coiled-coil domain-containing protein 42, humanhuman

Predictions only

Length 316 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC42Q96M95 AC008738.1-201ENST00000590117 375 ntTSL 5 BASIC5.18□□□□□ -1.58
CCDC42Q96M95 AC004160.1-202ENST00000599917 578 ntTSL 5 BASIC5.18□□□□□ -1.58
CCDC42Q96M95 COX6CP4-201ENST00000605798 228 ntBASIC5.18□□□□□ -1.58
CCDC42Q96M95 AL512329.2-201ENST00000607350 548 ntBASIC5.18□□□□□ -1.58
CCDC42Q96M95 AL356752.1-201ENST00000615844 593 ntBASIC5.18□□□□□ -1.58
CCDC42Q96M95 Metazoa_SRP.181-201ENST00000616636 288 ntBASIC5.18□□□□□ -1.58
CCDC42Q96M95 AL022401.1-201ENST00000619498 108 ntBASIC5.18□□□□□ -1.58
CCDC42Q96M95 AC026124.2-201ENST00000621847 656 ntBASIC5.18□□□□□ -1.58
CCDC42Q96M95 VIPR1-AS1-223ENST00000627073 451 ntTSL 5 BASIC5.18□□□□□ -1.58
CCDC42Q96M95 AC018793.2-201ENST00000639584 585 ntAPPRIS P1 BASIC5.18□□□□□ -1.58
CCDC42Q96M95 AC018793.3-201ENST00000640805 585 ntAPPRIS P1 BASIC5.18□□□□□ -1.58
CCDC42Q96M95 SESN1-201ENST00000302071 2718 ntTSL 1 (best) BASIC5.18□□□□□ -1.58
CCDC42Q96M95 HSPA8P18-201ENST00000439846 1928 ntBASIC5.18□□□□□ -1.58
CCDC42Q96M95 KARSP1-201ENST00000451871 1752 ntBASIC5.18□□□□□ -1.58
CCDC42Q96M95 THAP12P4-201ENST00000528321 2266 ntBASIC5.18□□□□□ -1.58
CCDC42Q96M95 TES-202ENST00000393481 2763 ntTSL 1 (best) BASIC5.18□□□□□ -1.58
CCDC42Q96M95 EFCAB3-201ENST00000305286 1542 ntAPPRIS P1 TSL 1 (best) BASIC5.18□□□□□ -1.58
CCDC42Q96M95 MTRNR2L7-201ENST00000544824 1535 ntAPPRIS P1 BASIC5.18□□□□□ -1.58
CCDC42Q96M95 RASA1-205ENST00000512763 3060 ntAPPRIS ALT2 TSL 2 BASIC5.17□□□□□ -1.58
CCDC42Q96M95 ZNF733P-202ENST00000444809 1573 ntBASIC5.17□□□□□ -1.58
CCDC42Q96M95 BCLAF1-207ENST00000527759 4373 ntAPPRIS ALT2 TSL 1 (best) BASIC5.17□□□□□ -1.58
CCDC42Q96M95 OR2L13-202ENST00000641714 1948 ntAPPRIS P1 BASIC5.17□□□□□ -1.58
CCDC42Q96M95 KCNJ6-201ENST00000609713 19645 ntAPPRIS P1 TSL 1 (best) BASIC5.17□□□□□ -1.58
CCDC42Q96M95 PSMD1-213ENST00000619128 3161 ntAPPRIS ALT1 TSL 5 BASIC5.17□□□□□ -1.58
CCDC42Q96M95 OR56A1-202ENST00000641423 6096 ntAPPRIS P1 BASIC5.17□□□□□ -1.58
CCDC42Q96M95 SLC26A3-201ENST00000340010 2863 ntAPPRIS P1 TSL 1 (best) BASIC5.17□□□□□ -1.58
CCDC42Q96M95 ARHGAP42P3-201ENST00000443989 2508 ntBASIC5.17□□□□□ -1.58
CCDC42Q96M95 AC135895.1-201ENST00000360528 1058 ntTSL 5 BASIC5.17□□□□□ -1.58
CCDC42Q96M95 RN7SKP162-201ENST00000363605 345 ntBASIC5.17□□□□□ -1.58
CCDC42Q96M95 RNA5SP455-201ENST00000365190 119 ntBASIC5.17□□□□□ -1.58
CCDC42Q96M95 RAET1L-202ENST00000367341 1285 ntAPPRIS P1 TSL 1 (best) BASIC5.17□□□□□ -1.58
CCDC42Q96M95 C2orf73-203ENST00000405749 576 ntTSL 4 BASIC5.17□□□□□ -1.58
CCDC42Q96M95 SRGAP3-AS1-201ENST00000414633 428 ntTSL 2 BASIC5.17□□□□□ -1.58
CCDC42Q96M95 AL031599.1-201ENST00000432694 808 ntTSL 3 BASIC5.17□□□□□ -1.58
CCDC42Q96M95 RPS17P8-201ENST00000434525 335 ntBASIC5.17□□□□□ -1.58
CCDC42Q96M95 TMX2P1-201ENST00000436507 708 ntBASIC5.17□□□□□ -1.58
CCDC42Q96M95 AL138899.2-201ENST00000439139 499 ntBASIC5.17□□□□□ -1.58
CCDC42Q96M95 LINC01781-202ENST00000443104 591 ntTSL 2 BASIC5.17□□□□□ -1.58
CCDC42Q96M95 AL096855.1-202ENST00000444276 439 ntTSL 2 BASIC5.17□□□□□ -1.58
CCDC42Q96M95 RNF219-AS1-202ENST00000444769 590 ntTSL 4 BASIC5.17□□□□□ -1.58
CCDC42Q96M95 AL163193.1-201ENST00000444895 788 ntBASIC5.17□□□□□ -1.58
CCDC42Q96M95 AC104651.2-201ENST00000447549 528 ntBASIC5.17□□□□□ -1.58
CCDC42Q96M95 LINC00448-202ENST00000448411 433 ntTSL 2 BASIC5.17□□□□□ -1.58
CCDC42Q96M95 AC011287.2-201ENST00000456809 842 ntTSL 5 BASIC5.17□□□□□ -1.58
CCDC42Q96M95 RN7SL515P-201ENST00000463999 297 ntBASIC5.17□□□□□ -1.58
CCDC42Q96M95 B4GALT4-AS1-201ENST00000470790 544 ntTSL 5 BASIC5.17□□□□□ -1.58
CCDC42Q96M95 RPL23AP37-201ENST00000479658 549 ntBASIC5.17□□□□□ -1.58
CCDC42Q96M95 RPS4XP18-201ENST00000495480 763 ntBASIC5.17□□□□□ -1.58
CCDC42Q96M95 SNRPCP2-201ENST00000504370 475 ntBASIC5.17□□□□□ -1.58
CCDC42Q96M95 AC005823.2-201ENST00000505978 650 ntTSL 3 BASIC5.17□□□□□ -1.58
CCDC42Q96M95 LINC02466-202ENST00000509105 653 ntTSL 3 BASIC5.17□□□□□ -1.58
CCDC42Q96M95 AC097515.1-202ENST00000511818 371 ntTSL 3 BASIC5.17□□□□□ -1.58
CCDC42Q96M95 IGKV2-18-201ENST00000522607 343 ntBASIC5.17□□□□□ -1.58
CCDC42Q96M95 AC095350.2-201ENST00000544034 201 ntTSL 5 BASIC5.17□□□□□ -1.58
CCDC42Q96M95 FKBP1BP1-201ENST00000553366 325 ntBASIC5.17□□□□□ -1.58
CCDC42Q96M95 ZNF682-204ENST00000593468 581 ntTSL 4 BASIC5.17□□□□□ -1.58
CCDC42Q96M95 LINC01125-220ENST00000599501 965 ntAPPRIS ALT2 TSL 5 BASIC5.17□□□□□ -1.58
CCDC42Q96M95 AC073254.1-207ENST00000600482 714 ntTSL 5 BASIC5.17□□□□□ -1.58
CCDC42Q96M95 IMMP1LP3-201ENST00000604197 224 ntBASIC5.17□□□□□ -1.58
CCDC42Q96M95 AL121932.1-201ENST00000605542 214 ntBASIC5.17□□□□□ -1.58
CCDC42Q96M95 RDM1-215ENST00000612980 501 ntTSL 1 (best) BASIC5.17□□□□□ -1.58
CCDC42Q96M95 AL627230.1-201ENST00000613077 211 ntBASIC5.17□□□□□ -1.58
CCDC42Q96M95 Metazoa_SRP.170-201ENST00000616060 254 ntBASIC5.17□□□□□ -1.58
CCDC42Q96M95 AL591926.8-201ENST00000616876 211 ntBASIC5.17□□□□□ -1.58
CCDC42Q96M95 AC008115.4-201ENST00000619780 775 ntBASIC5.17□□□□□ -1.58
CCDC42Q96M95 AL049767.1-202ENST00000637826 242 ntBASIC5.17□□□□□ -1.58
CCDC42Q96M95 ZNF534-204ENST00000433050 2047 ntAPPRIS ALT2 TSL 1 (best) BASIC5.17□□□□□ -1.58
CCDC42Q96M95 SERPINA9-204ENST00000424550 1462 ntTSL 1 (best) BASIC5.17□□□□□ -1.58
CCDC42Q96M95 CTNNA3-203ENST00000433211 10675 ntAPPRIS P1 TSL 1 (best) BASIC5.17□□□□□ -1.58
CCDC42Q96M95 TAX1BP1-203ENST00000409980 2629 ntAPPRIS ALT2 TSL 5 BASIC5.17□□□□□ -1.58
CCDC42Q96M95 AC108751.5-201ENST00000492880 1336 ntBASIC5.17□□□□□ -1.58
CCDC42Q96M95 AC120338.1-201ENST00000625074 1541 ntBASIC5.17□□□□□ -1.58
CCDC42Q96M95 RGS5-201ENST00000313961 5862 ntAPPRIS P3 TSL 1 (best) BASIC5.17□□□□□ -1.58
CCDC42Q96M95 LINC00276-202ENST00000418420 3503 ntTSL 1 (best) BASIC5.17□□□□□ -1.58
CCDC42Q96M95 POLE2-206ENST00000554396 1581 ntTSL 1 (best) BASIC5.16□□□□□ -1.58
CCDC42Q96M95 AMY2B-201ENST00000361355 2181 ntAPPRIS P1 TSL 1 (best) BASIC5.16□□□□□ -1.58
CCDC42Q96M95 UTS2B-201ENST00000340524 2395 ntAPPRIS P1 TSL 2 BASIC5.16□□□□□ -1.58
CCDC42Q96M95 DNAH8-205ENST00000449981 12940 ntTSL 5 BASIC5.16□□□□□ -1.58
CCDC42Q96M95 GPR85-201ENST00000297146 5079 ntAPPRIS P1 TSL 1 (best) BASIC5.16□□□□□ -1.58
CCDC42Q96M95 GLCE-201ENST00000261858 5037 ntAPPRIS P1 TSL 1 (best) BASIC5.16□□□□□ -1.58
CCDC42Q96M95 OR12D2-207ENST00000642051 1496 ntAPPRIS P1 BASIC5.16□□□□□ -1.58
CCDC42Q96M95 C10orf120-201ENST00000329446 1064 ntAPPRIS P1 TSL 1 (best) BASIC5.16□□□□□ -1.58
CCDC42Q96M95 MLIP-203ENST00000370877 1234 ntAPPRIS ALT2 TSL 5 BASIC5.16□□□□□ -1.58
CCDC42Q96M95 ASXL1-203ENST00000375689 812 ntTSL 5 BASIC5.16□□□□□ -1.58
CCDC42Q96M95 SNORD96B-201ENST00000386148 79 ntBASIC5.16□□□□□ -1.58
CCDC42Q96M95 BMS1P13-201ENST00000417301 885 ntBASIC5.16□□□□□ -1.58
CCDC42Q96M95 AC012506.4-201ENST00000421563 541 ntTSL 4 BASIC5.16□□□□□ -1.58
CCDC42Q96M95 AC021035.1-201ENST00000421597 427 ntTSL 3 BASIC5.16□□□□□ -1.58
CCDC42Q96M95 LINC02013-201ENST00000438156 526 ntTSL 2 BASIC5.16□□□□□ -1.58
CCDC42Q96M95 FAR2P1-206ENST00000449736 709 ntBASIC5.16□□□□□ -1.58
CCDC42Q96M95 AC135999.1-201ENST00000478962 479 ntBASIC5.16□□□□□ -1.58
CCDC42Q96M95 SSBP1-211ENST00000484178 676 ntAPPRIS P1 TSL 3 BASIC5.16□□□□□ -1.58
CCDC42Q96M95 LINC02492-201ENST00000502952 564 ntTSL 5 BASIC5.16□□□□□ -1.58
CCDC42Q96M95 MOCS2-205ENST00000508922 1210 ntTSL 5 BASIC5.16□□□□□ -1.58
CCDC42Q96M95 AC139722.1-201ENST00000512502 782 ntTSL 3 BASIC5.16□□□□□ -1.58
CCDC42Q96M95 HMGB1P19-201ENST00000517578 577 ntBASIC5.16□□□□□ -1.58
CCDC42Q96M95 BMPR1APS2-201ENST00000527904 1012 ntBASIC5.16□□□□□ -1.58
CCDC42Q96M95 AC034102.2-201ENST00000548861 489 ntAPPRIS P1 TSL 5 BASIC5.16□□□□□ -1.58
CCDC42Q96M95 MOCS2-209ENST00000582677 741 ntTSL 5 BASIC5.16□□□□□ -1.58
CCDC42Q96M95 AC005520.3-201ENST00000602874 370 ntBASIC5.16□□□□□ -1.58
Retrieved 100 of 98,524 protein–RNA pairs in 96 ms