Protein–RNA interactions for Protein: Q53GS9

USP39, U4/U6.U5 tri-snRNP-associated protein 2, humanhuman

Known RBP Predictions only

Length 565 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP39Q53GS9 SDAD1-201ENST00000356260 3017 ntAPPRIS P1 TSL 1 (best) BASIC5.98□□□□□ -1.45
USP39Q53GS9 ALG13-203ENST00000394780 4133 ntAPPRIS P1 TSL 2 BASIC5.98□□□□□ -1.45
USP39Q53GS9 TTC21B-201ENST00000243344 5482 ntAPPRIS P1 TSL 1 (best) BASIC5.98□□□□□ -1.45
USP39Q53GS9 KLRF1-202ENST00000354855 838 ntTSL 1 (best) BASIC5.98□□□□□ -1.45
USP39Q53GS9 OR10R3P-201ENST00000361688 942 ntBASIC5.98□□□□□ -1.45
USP39Q53GS9 RNA5SP394-201ENST00000364216 119 ntBASIC5.98□□□□□ -1.45
USP39Q53GS9 MLLT3-201ENST00000380321 708 ntTSL 3 BASIC5.98□□□□□ -1.45
USP39Q53GS9 PRB3-201ENST00000381842 1091 ntAPPRIS ALT2 TSL 5 BASIC5.98□□□□□ -1.45
USP39Q53GS9 BMS1P17-202ENST00000416720 316 ntBASIC5.98□□□□□ -1.45
USP39Q53GS9 AC015977.1-201ENST00000418887 292 ntBASIC5.98□□□□□ -1.45
USP39Q53GS9 AL162414.1-201ENST00000426204 744 ntTSL 3 BASIC5.98□□□□□ -1.45
USP39Q53GS9 AL021408.1-201ENST00000430428 552 ntTSL 4 BASIC5.98□□□□□ -1.45
USP39Q53GS9 RPS26P4-201ENST00000431743 355 ntBASIC5.98□□□□□ -1.45
USP39Q53GS9 AF127577.2-201ENST00000436429 824 ntTSL 3 BASIC5.98□□□□□ -1.45
USP39Q53GS9 MTATP6P23-201ENST00000440153 476 ntBASIC5.98□□□□□ -1.45
USP39Q53GS9 FMR1-IT1-201ENST00000441414 343 ntTSL 5 BASIC5.98□□□□□ -1.45
USP39Q53GS9 CATSPER2P1-205ENST00000446479 419 ntTSL 1 (best) BASIC5.98□□□□□ -1.45
USP39Q53GS9 AL445238.1-201ENST00000450029 712 ntTSL 2 BASIC5.98□□□□□ -1.45
USP39Q53GS9 VN1R32P-201ENST00000452234 905 ntBASIC5.98□□□□□ -1.45
USP39Q53GS9 SBDSP1-204ENST00000453858 737 ntBASIC5.98□□□□□ -1.45
USP39Q53GS9 AP002345.1-201ENST00000456493 928 ntBASIC5.98□□□□□ -1.45
USP39Q53GS9 AC073636.1-202ENST00000457756 558 ntTSL 4 BASIC5.98□□□□□ -1.45
USP39Q53GS9 AL445687.2-201ENST00000458156 728 ntBASIC5.98□□□□□ -1.45
USP39Q53GS9 AL133445.1-201ENST00000467051 452 ntBASIC5.98□□□□□ -1.45
USP39Q53GS9 MRPS22-205ENST00000478464 1065 ntTSL 5 BASIC5.98□□□□□ -1.45
USP39Q53GS9 AC008410.1-201ENST00000483777 339 ntBASIC5.98□□□□□ -1.45
USP39Q53GS9 RPL21P131-201ENST00000497298 483 ntBASIC5.98□□□□□ -1.45
USP39Q53GS9 AC090204.1-202ENST00000500843 737 ntTSL 5 BASIC5.98□□□□□ -1.45
USP39Q53GS9 AC034244.1-201ENST00000507687 207 ntBASIC5.98□□□□□ -1.45
USP39Q53GS9 AC138866.2-201ENST00000508650 584 ntBASIC5.98□□□□□ -1.45
USP39Q53GS9 AC147055.3-201ENST00000510547 851 ntBASIC5.98□□□□□ -1.45
USP39Q53GS9 LINC02505-202ENST00000510597 776 ntTSL 3 BASIC5.98□□□□□ -1.45
USP39Q53GS9 AC116353.3-201ENST00000511215 249 ntBASIC5.98□□□□□ -1.45
USP39Q53GS9 AC108727.2-201ENST00000512277 392 ntTSL 3 BASIC5.98□□□□□ -1.45
USP39Q53GS9 MTND3P5-201ENST00000512798 333 ntBASIC5.98□□□□□ -1.45
USP39Q53GS9 AC091435.2-201ENST00000514586 565 ntTSL 4 BASIC5.98□□□□□ -1.45
USP39Q53GS9 GPX8-208ENST00000515370 1036 ntTSL 2 BASIC5.98□□□□□ -1.45
USP39Q53GS9 RN7SKP67-201ENST00000515905 235 ntBASIC5.98□□□□□ -1.45
USP39Q53GS9 AC133480.1-201ENST00000547563 381 ntTSL 3 BASIC5.98□□□□□ -1.45
USP39Q53GS9 LINC01467-201ENST00000554211 1187 ntTSL 1 (best) BASIC5.98□□□□□ -1.45
USP39Q53GS9 AC012378.1-201ENST00000561155 364 ntTSL 3 BASIC5.98□□□□□ -1.45
USP39Q53GS9 AC135628.1-201ENST00000568867 534 ntBASIC5.98□□□□□ -1.45
USP39Q53GS9 AC010547.7-201ENST00000570323 333 ntBASIC5.98□□□□□ -1.45
USP39Q53GS9 AC087399.1-201ENST00000579769 573 ntTSL 4 BASIC5.98□□□□□ -1.45
USP39Q53GS9 AC124283.4-201ENST00000581815 456 ntBASIC5.98□□□□□ -1.45
USP39Q53GS9 AC023394.2-201ENST00000581987 792 ntTSL 5 BASIC5.98□□□□□ -1.45
USP39Q53GS9 AC002398.1-201ENST00000589397 427 ntTSL 5 BASIC5.98□□□□□ -1.45
USP39Q53GS9 AL357078.3-201ENST00000607528 618 ntBASIC5.98□□□□□ -1.45
USP39Q53GS9 AC103591.3-201ENST00000608684 209 ntBASIC5.98□□□□□ -1.45
USP39Q53GS9 AC069234.5-201ENST00000611056 416 ntBASIC5.98□□□□□ -1.45
USP39Q53GS9 RN7SL544P-201ENST00000617232 284 ntBASIC5.98□□□□□ -1.45
USP39Q53GS9 HOTTIP_3.1-201ENST00000619957 337 ntBASIC5.98□□□□□ -1.45
USP39Q53GS9 RN7SL763P-201ENST00000620922 284 ntBASIC5.98□□□□□ -1.45
USP39Q53GS9 KBTBD2-208ENST00000621876 1196 ntTSL 5 BASIC5.98□□□□□ -1.45
USP39Q53GS9 AL359715.5-201ENST00000623431 443 ntBASIC5.98□□□□□ -1.45
USP39Q53GS9 AC092159.4-201ENST00000624944 550 ntBASIC5.98□□□□□ -1.45
USP39Q53GS9 AL392088.2-201ENST00000637607 285 ntBASIC5.98□□□□□ -1.45
USP39Q53GS9 AC092378.1-202ENST00000500117 2296 ntTSL 2 BASIC5.98□□□□□ -1.45
USP39Q53GS9 RWDD2A-201ENST00000369724 3744 ntAPPRIS P1 TSL 1 (best) BASIC5.98□□□□□ -1.45
USP39Q53GS9 AC127164.1-201ENST00000548738 4196 ntTSL 2 BASIC5.98□□□□□ -1.45
USP39Q53GS9 ZNF610-208ENST00000613461 1643 ntAPPRIS ALT2 TSL 1 (best) BASIC5.98□□□□□ -1.45
USP39Q53GS9 AL360014.1-201ENST00000562922 2084 ntTSL 3 BASIC5.98□□□□□ -1.45
USP39Q53GS9 AL121768.1-201ENST00000613917 2544 ntBASIC5.98□□□□□ -1.45
USP39Q53GS9 AL137141.1-201ENST00000624622 4836 ntBASIC5.98□□□□□ -1.45
USP39Q53GS9 NCOA7-202ENST00000368357 5521 ntAPPRIS P3 TSL 1 (best) BASIC5.98□□□□□ -1.45
USP39Q53GS9 RNF213-204ENST00000508628 17730 ntAPPRIS ALT2 TSL 5 BASIC5.98□□□□□ -1.45
USP39Q53GS9 RNF217-201ENST00000359704 1784 ntTSL 1 (best) BASIC5.98□□□□□ -1.45
USP39Q53GS9 TPTE2P2-202ENST00000605924 2113 ntTSL 5 BASIC5.98□□□□□ -1.45
USP39Q53GS9 AL929601.4-201ENST00000613011 1341 ntBASIC5.98□□□□□ -1.45
USP39Q53GS9 C17orf78-203ENST00000611038 1675 ntAPPRIS ALT2 TSL 2 BASIC5.98□□□□□ -1.45
USP39Q53GS9 FHL5-201ENST00000326771 2031 ntAPPRIS P1 TSL 1 (best) BASIC5.98□□□□□ -1.45
USP39Q53GS9 TESPA1-212ENST00000532804 2000 ntAPPRIS ALT2 TSL 5 BASIC5.98□□□□□ -1.45
USP39Q53GS9 AC007842.1-201ENST00000597336 2039 ntBASIC5.98□□□□□ -1.45
USP39Q53GS9 CHST9-203ENST00000618847 11388 ntAPPRIS P1 TSL 1 (best) BASIC5.97□□□□□ -1.45
USP39Q53GS9 AIG1-208ENST00000494282 3393 ntTSL 1 (best) BASIC5.97□□□□□ -1.45
USP39Q53GS9 SOX5-216ENST00000546136 6975 ntAPPRIS P3 TSL 5 BASIC5.97□□□□□ -1.45
USP39Q53GS9 CX3CR1-201ENST00000358309 3151 ntTSL 2 BASIC5.97□□□□□ -1.45
USP39Q53GS9 GLRA2-204ENST00000443437 3182 ntTSL 2 BASIC5.97□□□□□ -1.45
USP39Q53GS9 KMO-202ENST00000366557 4888 ntAPPRIS ALT2 TSL 5 BASIC5.97□□□□□ -1.45
USP39Q53GS9 TMC5-201ENST00000219821 3687 ntAPPRIS P3 TSL 1 (best) BASIC5.97□□□□□ -1.45
USP39Q53GS9 RNU1-19P-201ENST00000363306 165 ntBASIC5.97□□□□□ -1.45
USP39Q53GS9 RNU4-68P-201ENST00000364314 141 ntBASIC5.97□□□□□ -1.45
USP39Q53GS9 AL590867.1-201ENST00000392385 1212 ntTSL 2 BASIC5.97□□□□□ -1.45
USP39Q53GS9 RPL23AP17-201ENST00000401064 499 ntBASIC5.97□□□□□ -1.45
USP39Q53GS9 ZSCAN12P1-201ENST00000406489 419 ntBASIC5.97□□□□□ -1.45
USP39Q53GS9 RNU4-34P-201ENST00000410431 124 ntBASIC5.97□□□□□ -1.45
USP39Q53GS9 LIX1L-AS1-202ENST00000412239 570 ntTSL 2 BASIC5.97□□□□□ -1.45
USP39Q53GS9 RAP1BP1-201ENST00000412709 553 ntBASIC5.97□□□□□ -1.45
USP39Q53GS9 AP000534.2-201ENST00000412729 568 ntBASIC5.97□□□□□ -1.45
USP39Q53GS9 RBMS3-AS1-201ENST00000414547 554 ntTSL 4 BASIC5.97□□□□□ -1.45
USP39Q53GS9 AL008987.1-201ENST00000415528 237 ntBASIC5.97□□□□□ -1.45
USP39Q53GS9 AL035604.1-201ENST00000416481 531 ntTSL 3 BASIC5.97□□□□□ -1.45
USP39Q53GS9 ICA1L-206ENST00000418208 602 ntTSL 4 BASIC5.97□□□□□ -1.45
USP39Q53GS9 MS4A6A-202ENST00000420732 863 ntTSL 1 (best) BASIC5.97□□□□□ -1.45
USP39Q53GS9 GNRH1-202ENST00000421054 470 ntAPPRIS P1 TSL 1 (best) BASIC5.97□□□□□ -1.45
USP39Q53GS9 AL390962.1-201ENST00000421507 526 ntTSL 3 BASIC5.97□□□□□ -1.45
USP39Q53GS9 AL132796.1-201ENST00000421617 479 ntTSL 3 BASIC5.97□□□□□ -1.45
USP39Q53GS9 NMD3P2-201ENST00000421815 761 ntBASIC5.97□□□□□ -1.45
USP39Q53GS9 AC078960.1-201ENST00000422160 177 ntTSL 5 BASIC5.97□□□□□ -1.45
USP39Q53GS9 MTCYBP5-201ENST00000423752 1135 ntBASIC5.97□□□□□ -1.45
Retrieved 100 of 98,524 protein–RNA pairs in 87.6 ms