Protein–RNA interactions for Protein: P34897

SHMT2, Serine hydroxymethyltransferase, mitochondrial, humanhuman

Predictions only

Length 504 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2P34897 RNF182-207ENST00000537663 3382 ntAPPRIS P1 TSL 4 BASIC4.88□□□□□ -1.63
SHMT2P34897 CSPP1-201ENST00000262210 4367 ntAPPRIS P3 TSL 1 (best) BASIC4.88□□□□□ -1.63
SHMT2P34897 ACTR3BP5-201ENST00000448440 1479 ntBASIC4.88□□□□□ -1.63
SHMT2P34897 ZBTB21-201ENST00000310826 7449 ntAPPRIS P1 TSL 1 (best) BASIC4.88□□□□□ -1.63
SHMT2P34897 DNAAF4-CCPG1-201ENST00000565113 4589 ntTSL 2 BASIC4.87□□□□□ -1.63
SHMT2P34897 WDR5B-201ENST00000330689 3720 ntAPPRIS P1 BASIC4.87□□□□□ -1.63
SHMT2P34897 SLC9C1-201ENST00000305815 4172 ntAPPRIS P3 TSL 2 BASIC4.87□□□□□ -1.63
SHMT2P34897 AP002512.4-201ENST00000641310 4672 ntAPPRIS P1 BASIC4.87□□□□□ -1.63
SHMT2P34897 HDAC9-204ENST00000406451 9705 ntAPPRIS ALT1 TSL 1 (best) BASIC4.87□□□□□ -1.63
SHMT2P34897 AC126323.6-202ENST00000568092 3511 ntBASIC4.87□□□□□ -1.63
SHMT2P34897 CD69-201ENST00000228434 1676 ntAPPRIS P1 TSL 1 (best) BASIC4.87□□□□□ -1.63
SHMT2P34897 PTPN13-209ENST00000511467 8076 ntAPPRIS P4 TSL 2 BASIC4.87□□□□□ -1.63
SHMT2P34897 IPO11-203ENST00000409534 1725 ntTSL 2 BASIC4.87□□□□□ -1.63
SHMT2P34897 ANXA1-202ENST00000376911 2209 ntAPPRIS P1 TSL 1 (best) BASIC4.87□□□□□ -1.63
SHMT2P34897 ZNF836-204ENST00000597252 3209 ntAPPRIS P2 TSL 2 BASIC4.87□□□□□ -1.63
SHMT2P34897 OR10AG1-201ENST00000312345 1016 ntAPPRIS P1 BASIC4.87□□□□□ -1.63
SHMT2P34897 CBX1P3-201ENST00000413296 527 ntBASIC4.87□□□□□ -1.63
SHMT2P34897 RPL36AP10-201ENST00000421785 322 ntBASIC4.87□□□□□ -1.63
SHMT2P34897 VN1R54P-201ENST00000435210 1049 ntBASIC4.87□□□□□ -1.63
SHMT2P34897 CLEC5A-203ENST00000439991 501 ntTSL 3 BASIC4.87□□□□□ -1.63
SHMT2P34897 RPL7AP61-201ENST00000443410 636 ntBASIC4.87□□□□□ -1.63
SHMT2P34897 SSR3-206ENST00000476217 807 ntTSL 3 BASIC4.87□□□□□ -1.63
SHMT2P34897 RPL37AP8-201ENST00000494116 276 ntBASIC4.87□□□□□ -1.63
SHMT2P34897 DUBR-205ENST00000495228 411 ntTSL 2 BASIC4.87□□□□□ -1.63
SHMT2P34897 AC140172.1-201ENST00000502928 141 ntBASIC4.87□□□□□ -1.63
SHMT2P34897 AC011389.1-201ENST00000509170 594 ntTSL 4 BASIC4.87□□□□□ -1.63
SHMT2P34897 RNA5SP303-201ENST00000516192 130 ntBASIC4.87□□□□□ -1.63
SHMT2P34897 AC079089.1-202ENST00000528800 1256 ntTSL 1 (best) BASIC4.87□□□□□ -1.63
SHMT2P34897 AC091231.1-201ENST00000558443 391 ntTSL 5 BASIC4.87□□□□□ -1.63
SHMT2P34897 AC011507.1-201ENST00000585364 567 ntTSL 4 BASIC4.87□□□□□ -1.63
SHMT2P34897 LINC01358-205ENST00000625548 874 ntTSL 5 BASIC4.87□□□□□ -1.63
SHMT2P34897 SPTY2D1-AS1-204ENST00000634992 373 ntAPPRIS P5 TSL 5 BASIC4.87□□□□□ -1.63
SHMT2P34897 ZNRD1ASP-221ENST00000637794 1074 ntBASIC4.87□□□□□ -1.63
SHMT2P34897 DGKH-206ENST00000536612 3957 ntTSL 1 (best) BASIC4.87□□□□□ -1.63
SHMT2P34897 AC233968.1-201ENST00000611212 1300 ntBASIC4.87□□□□□ -1.63
SHMT2P34897 AL929601.4-201ENST00000613011 1341 ntBASIC4.87□□□□□ -1.63
SHMT2P34897 AC063976.2-201ENST00000425667 3556 ntBASIC4.87□□□□□ -1.63
SHMT2P34897 AC112255.1-201ENST00000624070 2493 ntBASIC4.87□□□□□ -1.63
SHMT2P34897 SPART-201ENST00000355182 4820 ntAPPRIS P1 TSL 5 BASIC4.87□□□□□ -1.63
SHMT2P34897 AC131971.1-201ENST00000332881 1482 ntBASIC4.87□□□□□ -1.63
SHMT2P34897 TEX41-210ENST00000451774 2098 ntTSL 1 (best) BASIC4.87□□□□□ -1.63
SHMT2P34897 PLS1-211ENST00000497002 2258 ntAPPRIS P1 TSL 1 (best) BASIC4.86□□□□□ -1.63
SHMT2P34897 CRISP1-201ENST00000329411 1709 ntTSL 5 BASIC4.86□□□□□ -1.63
SHMT2P34897 AL158835.1-203ENST00000415305 3149 ntTSL 1 (best) BASIC4.86□□□□□ -1.63
SHMT2P34897 STAG2-205ENST00000371160 6045 ntAPPRIS P3 TSL 1 (best) BASIC4.86□□□□□ -1.63
SHMT2P34897 SMAD4-202ENST00000398417 8495 ntAPPRIS P1 TSL 5 BASIC4.86□□□□□ -1.63
SHMT2P34897 ATP5HP3-201ENST00000396994 486 ntBASIC4.86□□□□□ -1.63
SHMT2P34897 DEFB113-201ENST00000398718 249 ntAPPRIS P1 TSL 1 (best) BASIC4.86□□□□□ -1.63
SHMT2P34897 MYL12B-202ENST00000400175 1025 ntAPPRIS P1 TSL 3 BASIC4.86□□□□□ -1.63
SHMT2P34897 AL136116.2-201ENST00000404020 785 ntBASIC4.86□□□□□ -1.63
SHMT2P34897 U3.32-201ENST00000408116 212 ntBASIC4.86□□□□□ -1.63
SHMT2P34897 RN7SKP97-201ENST00000410966 333 ntBASIC4.86□□□□□ -1.63
SHMT2P34897 AC098820.3-201ENST00000414135 976 ntTSL 3 BASIC4.86□□□□□ -1.63
SHMT2P34897 AC087380.1-202ENST00000415970 1163 ntTSL 2 BASIC4.86□□□□□ -1.63
SHMT2P34897 AC007394.1-201ENST00000421941 531 ntBASIC4.86□□□□□ -1.63
SHMT2P34897 AC006455.6-201ENST00000426192 893 ntBASIC4.86□□□□□ -1.63
SHMT2P34897 HSPE1P16-201ENST00000426640 348 ntBASIC4.86□□□□□ -1.63
SHMT2P34897 RPS27P18-201ENST00000431701 247 ntBASIC4.86□□□□□ -1.63
SHMT2P34897 TH2LCRR-202ENST00000435042 472 ntTSL 5 BASIC4.86□□□□□ -1.63
SHMT2P34897 RHOT1P3-201ENST00000436571 331 ntBASIC4.86□□□□□ -1.63
SHMT2P34897 AL121957.1-202ENST00000437040 329 ntTSL 3 BASIC4.86□□□□□ -1.63
SHMT2P34897 LINC01133-202ENST00000443364 1266 ntTSL 5 BASIC4.86□□□□□ -1.63
SHMT2P34897 TCEA1P1-201ENST00000449716 880 ntBASIC4.86□□□□□ -1.63
SHMT2P34897 AL137001.1-201ENST00000450212 199 ntTSL 3 BASIC4.86□□□□□ -1.63
SHMT2P34897 AL035446.1-201ENST00000455011 453 ntTSL 5 BASIC4.86□□□□□ -1.63
SHMT2P34897 ZIC4-AS1-201ENST00000462168 268 ntTSL 5 BASIC4.86□□□□□ -1.63
SHMT2P34897 AL591473.1-201ENST00000464297 313 ntBASIC4.86□□□□□ -1.63
SHMT2P34897 RN7SL319P-201ENST00000480656 221 ntBASIC4.86□□□□□ -1.63
SHMT2P34897 AC008410.1-201ENST00000483777 339 ntBASIC4.86□□□□□ -1.63
SHMT2P34897 AC138409.2-202ENST00000507274 458 ntBASIC4.86□□□□□ -1.63
SHMT2P34897 RPL37-204ENST00000508493 553 ntAPPRIS ALT1 TSL 1 (best) BASIC4.86□□□□□ -1.63
SHMT2P34897 AC109830.1-202ENST00000515491 860 ntTSL 1 (best) BASIC4.86□□□□□ -1.63
SHMT2P34897 RNA5SP464-201ENST00000516251 108 ntBASIC4.86□□□□□ -1.63
SHMT2P34897 KCTD9P6-201ENST00000522306 950 ntBASIC4.86□□□□□ -1.63
SHMT2P34897 AC025437.5-201ENST00000522769 314 ntTSL 3 BASIC4.86□□□□□ -1.63
SHMT2P34897 AC092134.1-201ENST00000563690 800 ntTSL 3 BASIC4.86□□□□□ -1.63
SHMT2P34897 AC010547.7-201ENST00000570323 333 ntBASIC4.86□□□□□ -1.63
SHMT2P34897 EIF1P5-201ENST00000585002 234 ntBASIC4.86□□□□□ -1.63
SHMT2P34897 AC011487.3-201ENST00000593607 453 ntBASIC4.86□□□□□ -1.63
SHMT2P34897 MEMO1P5-201ENST00000604810 406 ntBASIC4.86□□□□□ -1.63
SHMT2P34897 AC090510.2-201ENST00000617465 629 ntBASIC4.86□□□□□ -1.63
SHMT2P34897 AC112694.2-201ENST00000623697 768 ntBASIC4.86□□□□□ -1.63
SHMT2P34897 AL353662.3-201ENST00000625131 237 ntBASIC4.86□□□□□ -1.63
SHMT2P34897 AC087632.1-216ENST00000625619 487 ntAPPRIS P1 TSL 3 BASIC4.86□□□□□ -1.63
SHMT2P34897 C2orf83-206ENST00000642055 453 ntAPPRIS P3 BASIC4.86□□□□□ -1.63
SHMT2P34897 EIF4EBP2-201ENST00000373218 7257 ntAPPRIS P1 TSL 1 (best) BASIC4.86□□□□□ -1.63
SHMT2P34897 AC027228.2-201ENST00000567141 2154 ntBASIC4.86□□□□□ -1.63
SHMT2P34897 PCAT14-202ENST00000627127 3935 ntBASIC4.86□□□□□ -1.63
SHMT2P34897 BAZ2B-203ENST00000392782 8058 ntTSL 1 (best) BASIC4.86□□□□□ -1.63
SHMT2P34897 VCAM1-203ENST00000370115 2475 ntTSL 5 BASIC4.86□□□□□ -1.63
SHMT2P34897 INTS6P1-201ENST00000504674 2530 ntBASIC4.86□□□□□ -1.63
SHMT2P34897 AC092821.1-204ENST00000518709 3552 ntTSL 5 BASIC4.86□□□□□ -1.63
SHMT2P34897 TCHHL1-201ENST00000368806 3603 ntAPPRIS P1 TSL 1 (best) BASIC4.86□□□□□ -1.63
SHMT2P34897 FAM135A-210ENST00000505868 5173 ntTSL 5 BASIC4.86□□□□□ -1.63
SHMT2P34897 TDO2-208ENST00000536354 1701 ntAPPRIS P1 TSL 1 (best) BASIC4.86□□□□□ -1.63
SHMT2P34897 SCN2A-201ENST00000283256 8660 ntAPPRIS P5 TSL 1 (best) BASIC4.86□□□□□ -1.63
SHMT2P34897 OR5B12-202ENST00000641921 1807 ntAPPRIS P1 BASIC4.86□□□□□ -1.63
SHMT2P34897 PSG1-204ENST00000436291 2047 ntAPPRIS ALT2 TSL 1 (best) BASIC4.85□□□□□ -1.63
SHMT2P34897 GLCE-201ENST00000261858 5037 ntAPPRIS P1 TSL 1 (best) BASIC4.85□□□□□ -1.63
SHMT2P34897 POU2F1-202ENST00000367862 14038 ntAPPRIS ALT2 TSL 1 (best) BASIC4.85□□□□□ -1.63
Retrieved 100 of 98,524 protein–RNA pairs in 75.2 ms